{
  "schema_version": "1.0",
  "generated_at": "2026-05-28T12:26:56+00:00",
  "species": {
    "Achromobacter_xylosoxidans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6200000.0,
              "upper": 7400000.0,
              "final_lower": 6200000.0,
              "final_upper": 7400000.0,
              "warn_lower": 6300000.0,
              "warn_upper": 7000000.0,
              "source": "computed",
              "ml_lower": 6251810.05,
              "ml_upper": 7359146.0,
              "auto_lower": 6251810.05,
              "auto_upper": 7078655.35,
              "refseq_lower": 6285835.82,
              "refseq_upper": 7320364.145
            },
            {
              "metric": "GC_Content",
              "lower": 65.77,
              "upper": 68.27,
              "final_lower": 65.77,
              "final_upper": 68.27,
              "warn_lower": 67.24,
              "warn_upper": 67.91,
              "source": "computed",
              "ml_lower": 65.779,
              "ml_upper": 68.2657,
              "auto_lower": 67.214355,
              "auto_upper": 67.9619925,
              "refseq_lower": 65.81153499999999,
              "refseq_upper": 68.208649
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5600.0,
              "upper": 6900.0,
              "final_lower": 5600.0,
              "final_upper": 6900.0,
              "warn_lower": 5700.0,
              "warn_upper": 6500.0,
              "source": "computed",
              "ml_lower": 5698.92,
              "ml_upper": 6870.0,
              "auto_lower": 5698.925,
              "auto_upper": 6592.374999999999,
              "refseq_lower": 5778.585,
              "refseq_upper": 6833.28
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.1,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 91.33624999999999,
              "refseq_upper": 99.04935
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 9.24,
              "auto_lower": 0.01,
              "auto_upper": 2.6072499999999996,
              "refseq_lower": 1.1979,
              "refseq_upper": 9.090149999999998
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 39000.0,
              "warn_upper": 982625.02,
              "source": "computed",
              "ml_lower": 33326.78,
              "ml_upper": 982625.02,
              "auto_lower": 33326.775,
              "auto_upper": 982625.0249999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 450.0,
              "final_lower": null,
              "final_upper": 450.0,
              "warn_lower": 21.42,
              "warn_upper": 350.0,
              "source": "computed",
              "ml_lower": 21.42,
              "ml_upper": 447.22,
              "auto_lower": 21.425,
              "auto_upper": 447.22499999999974,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 150075.98,
              "warn_upper": 2708406.9,
              "source": "computed",
              "ml_lower": 150075.98,
              "ml_upper": 2708406.9,
              "auto_lower": 150075.975,
              "auto_upper": 2708406.8999999966,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 286,
            "refseq_count": 28,
            "final_count": 286,
            "filtered_out_count": 0,
            "pass_count": 256,
            "warn_count": 32,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5900000.0,
              "upper": 7400000.0,
              "final_lower": 5900000.0,
              "final_upper": 7400000.0,
              "warn_lower": 6000000.0,
              "warn_upper": 7000000.0,
              "source": "computed",
              "ml_lower": 5940074.3,
              "ml_upper": 7359146.0,
              "auto_lower": 5940074.3,
              "auto_upper": 6968810.03,
              "refseq_lower": 6285835.82,
              "refseq_upper": 7320364.145
            },
            {
              "metric": "GC_Content",
              "lower": 65.0,
              "upper": 69.0,
              "final_lower": 65.0,
              "final_upper": 69.0,
              "warn_lower": 67.0,
              "warn_upper": 68.0,
              "source": "computed",
              "ml_lower": 65.779,
              "ml_upper": 68.2657,
              "auto_lower": 67.0,
              "auto_upper": 68.0,
              "refseq_lower": 65.81153499999999,
              "refseq_upper": 68.208649
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6900.0,
              "final_lower": 5300.0,
              "final_upper": 6900.0,
              "warn_lower": 5400.0,
              "warn_upper": 6400.0,
              "source": "computed",
              "ml_lower": 5389.55,
              "ml_upper": 6870.0,
              "auto_lower": 5389.55,
              "auto_upper": 6417.84,
              "refseq_lower": 5778.585,
              "refseq_upper": 6833.28
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.1,
              "ml_upper": 100.0,
              "auto_lower": 98.4383,
              "auto_upper": 100.0,
              "refseq_lower": 91.33624999999999,
              "refseq_upper": 99.04935
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 9.24,
              "auto_lower": 0.0,
              "auto_upper": 1.6420999999999997,
              "refseq_lower": 1.1979,
              "refseq_upper": 9.090149999999998
            },
            {
              "metric": "N50",
              "lower": 24000.0,
              "upper": null,
              "final_lower": 24000.0,
              "final_upper": null,
              "warn_lower": 33000.0,
              "warn_upper": 1345221.79,
              "source": "computed",
              "ml_lower": 24803.75,
              "ml_upper": 1345221.79,
              "auto_lower": 24803.75,
              "auto_upper": 1345221.7899999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 430.0,
              "final_lower": null,
              "final_upper": 430.0,
              "warn_lower": 13.0,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 13.0,
              "ml_upper": 422.07,
              "auto_lower": 13.0,
              "auto_upper": 422.07,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 93312.25,
              "warn_upper": 2811238.56,
              "source": "computed",
              "ml_lower": 93312.25,
              "ml_upper": 2811238.56,
              "auto_lower": 93312.25,
              "auto_upper": 2811238.56,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 387,
            "refseq_count": 28,
            "final_count": 387,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Acinetobacter_baumannii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4700000.0,
              "final_lower": 3600000.0,
              "final_upper": 4700000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 4200000.0,
              "source": "computed",
              "ml_lower": 3638126.0,
              "ml_upper": 4613804.0,
              "auto_lower": 3673196.9,
              "auto_upper": 4334398.69,
              "refseq_lower": 3727654.14,
              "refseq_upper": 4476849.75
            },
            {
              "metric": "GC_Content",
              "lower": 38.68,
              "upper": 39.75,
              "final_lower": 38.68,
              "final_upper": 39.75,
              "warn_lower": 38.8,
              "warn_upper": 39.17,
              "source": "computed",
              "ml_lower": 38.6896,
              "ml_upper": 39.7475,
              "auto_lower": 38.758869,
              "auto_upper": 39.260708,
              "refseq_lower": 38.807421,
              "refseq_upper": 39.33881
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4600.0,
              "final_lower": 3400.0,
              "final_upper": 4600.0,
              "warn_lower": 3500.0,
              "warn_upper": 4100.0,
              "source": "computed",
              "ml_lower": 3452.0,
              "ml_upper": 4524.0,
              "auto_lower": 3465.0,
              "auto_upper": 4195.0,
              "refseq_lower": 3510.0,
              "refseq_upper": 4435.719999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.86,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 97.06490000000001,
              "refseq_upper": 99.94
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.63,
              "auto_lower": 0.0,
              "auto_upper": 1.32,
              "refseq_lower": 0.06,
              "refseq_upper": 4.243500000000006
            },
            {
              "metric": "N50",
              "lower": 24000.0,
              "upper": null,
              "final_lower": 24000.0,
              "final_upper": null,
              "warn_lower": 36000.0,
              "warn_upper": 462404.86,
              "source": "computed",
              "ml_lower": 24078.05,
              "ml_upper": 462404.86,
              "auto_lower": 24078.05,
              "auto_upper": 462404.86,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 380.0,
              "final_lower": null,
              "final_upper": 380.0,
              "warn_lower": 35.0,
              "warn_upper": 270.0,
              "source": "computed",
              "ml_lower": 35.0,
              "ml_upper": 379.77,
              "auto_lower": 35.0,
              "auto_upper": 379.77000000000044,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90339.61,
              "warn_upper": 1067728.0,
              "source": "computed",
              "ml_lower": 90339.61,
              "ml_upper": 1067728.0,
              "auto_lower": 90339.61,
              "auto_upper": 1067728.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 26247,
            "refseq_count": 1015,
            "final_count": 26247,
            "filtered_out_count": 0,
            "pass_count": 23828,
            "warn_count": 3230,
            "fail_count": 1103
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Acinetobacter_baylyi": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3200000.0,
              "upper": 3900000.0,
              "final_lower": 3200000.0,
              "final_upper": 3900000.0,
              "warn_lower": 3200000.0,
              "warn_upper": 3700000.0,
              "source": "computed",
              "ml_lower": 3273777.64,
              "ml_upper": 3868785.11,
              "auto_lower": 3273777.64,
              "auto_upper": 3868785.114999998,
              "refseq_lower": 3598701.8,
              "refseq_upper": 3629849.18
            },
            {
              "metric": "GC_Content",
              "lower": 40.13,
              "upper": 40.59,
              "final_lower": 40.13,
              "final_upper": 40.59,
              "warn_lower": 40.31,
              "warn_upper": 40.44,
              "source": "computed",
              "ml_lower": 40.1367,
              "ml_upper": 40.5801,
              "auto_lower": 40.136745499999996,
              "auto_upper": 40.580109,
              "refseq_lower": 40.429793000000004,
              "refseq_upper": 40.463750000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3000.0,
              "upper": 3700.0,
              "final_lower": 3000.0,
              "final_upper": 3700.0,
              "warn_lower": 3000.0,
              "warn_upper": 3400.0,
              "source": "computed",
              "ml_lower": 3002.2,
              "ml_upper": 3601.94,
              "auto_lower": 3002.205,
              "auto_upper": 3601.9399999999982,
              "refseq_lower": 3357.05,
              "refseq_upper": 3390.71
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.37,
              "ml_upper": 100.0,
              "auto_lower": 99.96,
              "auto_upper": 100.0,
              "refseq_lower": 98.3752,
              "refseq_upper": 98.89
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 0.93,
              "auto_lower": 0.02,
              "auto_upper": 0.9258999999999998,
              "refseq_lower": 0.42,
              "refseq_upper": 0.8556
            },
            {
              "metric": "N50",
              "lower": 20000.0,
              "upper": null,
              "final_lower": 20000.0,
              "final_upper": null,
              "warn_lower": 39000.0,
              "warn_upper": 792700.0,
              "source": "computed",
              "ml_lower": 20271.13,
              "ml_upper": 792700.0,
              "auto_lower": 20271.13,
              "auto_upper": 792700.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 370.0,
              "final_lower": null,
              "final_upper": 370.0,
              "warn_lower": 23.0,
              "warn_upper": 210.0,
              "source": "computed",
              "ml_lower": 23.0,
              "ml_upper": 366.52,
              "auto_lower": 23.0,
              "auto_upper": 366.52499999999884,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 100218.2,
              "warn_upper": 1422396.0,
              "source": "computed",
              "ml_lower": 100218.2,
              "ml_upper": 1422396.0,
              "auto_lower": 100218.195,
              "auto_upper": 1422396.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 242,
            "refseq_count": 3,
            "final_count": 242,
            "filtered_out_count": 0,
            "pass_count": 228,
            "warn_count": 9,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Acinetobacter_johnsonii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3300000.0,
              "upper": 4200000.0,
              "final_lower": 3300000.0,
              "final_upper": 4200000.0,
              "warn_lower": 3300000.0,
              "warn_upper": 4000000.0,
              "source": "computed",
              "ml_lower": 3308306.99,
              "ml_upper": 4135620.0,
              "auto_lower": 3308306.99,
              "auto_upper": 3967272.139999999,
              "refseq_lower": 3343945.96,
              "refseq_upper": 4131671.16
            },
            {
              "metric": "GC_Content",
              "lower": 40.99,
              "upper": 41.68,
              "final_lower": 40.99,
              "final_upper": 41.68,
              "warn_lower": 41.07,
              "warn_upper": 41.52,
              "source": "computed",
              "ml_lower": 40.9979,
              "ml_upper": 41.675,
              "auto_lower": 40.997933,
              "auto_upper": 41.570482,
              "refseq_lower": 41.020344,
              "refseq_upper": 41.660911999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3200.0,
              "upper": 4300.0,
              "final_lower": 3200.0,
              "final_upper": 4300.0,
              "warn_lower": 3200.0,
              "warn_upper": 3900.0,
              "source": "computed",
              "ml_lower": 3211.87,
              "ml_upper": 4202.0,
              "auto_lower": 3211.87,
              "auto_upper": 4073.5799999999995,
              "refseq_lower": 3236.6,
              "refseq_upper": 4179.115000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 86.0,
              "upper": null,
              "final_lower": 86.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 86.87,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 87.0836,
              "refseq_upper": 95.79
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.06,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 8.12,
              "auto_lower": 0.0629,
              "auto_upper": 1.25,
              "refseq_lower": 1.0132,
              "refseq_upper": 8.001199999999999
            },
            {
              "metric": "N50",
              "lower": 30000.0,
              "upper": null,
              "final_lower": 30000.0,
              "final_upper": null,
              "warn_lower": 32000.0,
              "warn_upper": 383596.67,
              "source": "computed",
              "ml_lower": 30240.24,
              "ml_upper": 383596.67,
              "auto_lower": 30240.24,
              "auto_upper": 383596.67,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 470.0,
              "final_lower": null,
              "final_upper": 470.0,
              "warn_lower": 24.43,
              "warn_upper": 450.0,
              "source": "computed",
              "ml_lower": 24.43,
              "ml_upper": 460.11,
              "auto_lower": 24.43,
              "auto_upper": 460.10999999999984,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 111279.29,
              "warn_upper": 825134.0,
              "source": "computed",
              "ml_lower": 111279.29,
              "ml_upper": 825134.0,
              "auto_lower": 111279.29,
              "auto_upper": 825134.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 87,
            "refseq_count": 25,
            "final_count": 87,
            "filtered_out_count": 0,
            "pass_count": 80,
            "warn_count": 14,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Acinetobacter_nosocomialis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3700000.0,
              "upper": 4500000.0,
              "final_lower": 3700000.0,
              "final_upper": 4500000.0,
              "warn_lower": 3800000.0,
              "warn_upper": 4400000.0,
              "source": "computed",
              "ml_lower": 3768285.8,
              "ml_upper": 4428133.0,
              "auto_lower": 3768285.8,
              "auto_upper": 4324595.2,
              "refseq_lower": 3798593.94,
              "refseq_upper": 4422659.68
            },
            {
              "metric": "GC_Content",
              "lower": 38.53,
              "upper": 39.03,
              "final_lower": 38.53,
              "final_upper": 39.03,
              "warn_lower": 38.6,
              "warn_upper": 38.9,
              "source": "computed",
              "ml_lower": 38.5399,
              "ml_upper": 39.0246,
              "auto_lower": 38.53994,
              "auto_upper": 39.02462,
              "refseq_lower": 38.647202,
              "refseq_upper": 38.899370999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3500.0,
              "upper": 4300.0,
              "final_lower": 3500.0,
              "final_upper": 4300.0,
              "warn_lower": 3500.0,
              "warn_upper": 4200.0,
              "source": "computed",
              "ml_lower": 3521.0,
              "ml_upper": 4216.0,
              "auto_lower": 3521.0,
              "auto_upper": 4137.2,
              "refseq_lower": 3595.75,
              "refseq_upper": 4211.24
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.32,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 89.58009999999999,
              "refseq_upper": 95.2864
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 8.86,
              "auto_lower": 0.0,
              "auto_upper": 0.9939999999999998,
              "refseq_lower": 1.4923,
              "refseq_upper": 8.754599999999998
            },
            {
              "metric": "N50",
              "lower": 20000.0,
              "upper": null,
              "final_lower": 20000.0,
              "final_upper": null,
              "warn_lower": 29000.0,
              "warn_upper": 802378.6,
              "source": "computed",
              "ml_lower": 20670.4,
              "ml_upper": 802378.6,
              "auto_lower": 20670.4,
              "auto_upper": 802378.5999999964,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 430.0,
              "final_lower": null,
              "final_upper": 430.0,
              "warn_lower": 29.6,
              "warn_upper": 290.0,
              "source": "computed",
              "ml_lower": 29.6,
              "ml_upper": 421.2,
              "auto_lower": 29.6,
              "auto_upper": 421.19999999999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 77345.6,
              "warn_upper": 1873775.0,
              "source": "computed",
              "ml_lower": 77345.6,
              "ml_upper": 1873775.0,
              "auto_lower": 77345.6,
              "auto_upper": 1873775.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 321,
            "refseq_count": 35,
            "final_count": 321,
            "filtered_out_count": 0,
            "pass_count": 297,
            "warn_count": 30,
            "fail_count": 19
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Acinetobacter_pittii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4500000.0,
              "final_lower": 3600000.0,
              "final_upper": 4500000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 4300000.0,
              "source": "computed",
              "ml_lower": 3688740.0,
              "ml_upper": 4499353.0,
              "auto_lower": 3701214.4,
              "auto_upper": 4405376.454999999,
              "refseq_lower": 3741095.565,
              "refseq_upper": 4468208.905
            },
            {
              "metric": "GC_Content",
              "lower": 38.47,
              "upper": 39.18,
              "final_lower": 38.47,
              "final_upper": 39.18,
              "warn_lower": 38.56,
              "warn_upper": 38.91,
              "source": "computed",
              "ml_lower": 38.4757,
              "ml_upper": 39.1757,
              "auto_lower": 38.475677499999996,
              "auto_upper": 38.9387555,
              "refseq_lower": 38.6406355,
              "refseq_upper": 39.120377
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4400.0,
              "final_lower": 3400.0,
              "final_upper": 4400.0,
              "warn_lower": 3500.0,
              "warn_upper": 4100.0,
              "source": "computed",
              "ml_lower": 3428.73,
              "ml_upper": 4327.0,
              "auto_lower": 3428.73,
              "auto_upper": 4211.315,
              "refseq_lower": 3535.485,
              "refseq_upper": 4326.19
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.5,
              "ml_upper": 100.0,
              "auto_lower": 99.94955,
              "auto_upper": 100.0,
              "refseq_lower": 98.0265,
              "refseq_upper": 99.99
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.5,
              "auto_lower": 0.01,
              "auto_upper": 1.122149999999989,
              "refseq_lower": 0.02265,
              "refseq_upper": 1.3886999999999998
            },
            {
              "metric": "N50",
              "lower": 30000.0,
              "upper": null,
              "final_lower": 30000.0,
              "final_upper": null,
              "warn_lower": 51000.0,
              "warn_upper": 985536.83,
              "source": "computed",
              "ml_lower": 30895.42,
              "ml_upper": 985536.83,
              "auto_lower": 30895.425,
              "auto_upper": 985536.8349999984,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 300.0,
              "final_lower": null,
              "final_upper": 300.0,
              "warn_lower": 23.0,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 23.0,
              "ml_upper": 299.47,
              "auto_lower": 23.0,
              "auto_upper": 299.47499999999775,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 122185.0,
              "warn_upper": 1740532.53,
              "source": "computed",
              "ml_lower": 122185.0,
              "ml_upper": 1740532.53,
              "auto_lower": 122185.005,
              "auto_upper": 1740532.5299999993,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 592,
            "refseq_count": 82,
            "final_count": 592,
            "filtered_out_count": 0,
            "pass_count": 550,
            "warn_count": 65,
            "fail_count": 24
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Acinetobacter_radioresistens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2900000.0,
              "upper": 3500000.0,
              "final_lower": 2900000.0,
              "final_upper": 3500000.0,
              "warn_lower": 2900000.0,
              "warn_upper": 3500000.0,
              "source": "computed",
              "ml_lower": 2984380.26,
              "ml_upper": 3496314.51,
              "auto_lower": 2984380.255,
              "auto_upper": 3496314.51,
              "refseq_lower": 3091069.49,
              "refseq_upper": 3432246.84
            },
            {
              "metric": "GC_Content",
              "lower": 41.16,
              "upper": 41.85,
              "final_lower": 41.16,
              "final_upper": 41.85,
              "warn_lower": 41.32,
              "warn_upper": 41.75,
              "source": "computed",
              "ml_lower": 41.1654,
              "ml_upper": 41.8495,
              "auto_lower": 41.165442500000005,
              "auto_upper": 41.785106,
              "refseq_lower": 41.389288,
              "refseq_upper": 41.843023
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2700.0,
              "upper": 3400.0,
              "final_lower": 2700.0,
              "final_upper": 3400.0,
              "warn_lower": 2700.0,
              "warn_upper": 3400.0,
              "source": "computed",
              "ml_lower": 2740.34,
              "ml_upper": 3370.98,
              "auto_lower": 2740.34,
              "auto_upper": 3370.9849999999997,
              "refseq_lower": 2890.26,
              "refseq_upper": 3275.65
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.64,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.6538,
              "refseq_upper": 99.65480000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.2,
              "auto_lower": 0.0,
              "auto_upper": 0.4799499999999993,
              "refseq_lower": 0.1844,
              "refseq_upper": 1.1966999999999999
            },
            {
              "metric": "N50",
              "lower": 45000.0,
              "upper": null,
              "final_lower": 45000.0,
              "final_upper": null,
              "warn_lower": 54000.0,
              "warn_upper": 400625.62,
              "source": "computed",
              "ml_lower": 45805.9,
              "ml_upper": 400625.62,
              "auto_lower": 45805.905,
              "auto_upper": 400625.6249999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 24.89,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 24.89,
              "ml_upper": 178.65,
              "auto_lower": 24.89,
              "auto_upper": 178.64999999999978,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 132910.5,
              "warn_upper": 729916.92,
              "source": "computed",
              "ml_lower": 132910.5,
              "ml_upper": 729916.92,
              "auto_lower": 132910.495,
              "auto_upper": 729916.9199999989,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 90,
            "refseq_count": 7,
            "final_count": 90,
            "filtered_out_count": 0,
            "pass_count": 84,
            "warn_count": 10,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Acinetobacter_ursingii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3200000.0,
              "upper": 4200000.0,
              "final_lower": 3200000.0,
              "final_upper": 4200000.0,
              "warn_lower": 3300000.0,
              "warn_upper": 4000000.0,
              "source": "computed",
              "ml_lower": 3251927.48,
              "ml_upper": 4185992.0,
              "auto_lower": 3251927.48,
              "auto_upper": 4024415.82,
              "refseq_lower": 3490077.335,
              "refseq_upper": 4182194.675
            },
            {
              "metric": "GC_Content",
              "lower": 39.72,
              "upper": 40.35,
              "final_lower": 39.72,
              "final_upper": 40.35,
              "warn_lower": 39.79,
              "warn_upper": 40.17,
              "source": "computed",
              "ml_lower": 39.722,
              "ml_upper": 40.3467,
              "auto_lower": 39.722006,
              "auto_upper": 40.197423,
              "refseq_lower": 39.949325,
              "refseq_upper": 40.3431615
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3000.0,
              "upper": 4000.0,
              "final_lower": 3000.0,
              "final_upper": 4000.0,
              "warn_lower": 3100.0,
              "warn_upper": 3800.0,
              "source": "computed",
              "ml_lower": 3035.12,
              "ml_upper": 3947.0,
              "auto_lower": 3035.12,
              "auto_upper": 3813.41,
              "refseq_lower": 3334.945,
              "refseq_upper": 3944.445
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.24,
              "ml_upper": 100.0,
              "auto_lower": 99.8853,
              "auto_upper": 100.0,
              "refseq_lower": 99.24,
              "refseq_upper": 99.73
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 1.13,
              "auto_lower": 0.02,
              "auto_upper": 1.13,
              "refseq_lower": 0.041800000000000004,
              "refseq_upper": 0.5273
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 45000.0,
              "warn_upper": 281706.41,
              "source": "computed",
              "ml_lower": 33433.55,
              "ml_upper": 281706.41,
              "auto_lower": 33433.55,
              "auto_upper": 281706.41,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 260.0,
              "final_lower": null,
              "final_upper": 260.0,
              "warn_lower": 50.77,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 50.77,
              "ml_upper": 252.0,
              "auto_lower": 50.77,
              "auto_upper": 252.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 124017.92,
              "warn_upper": 604707.24,
              "source": "computed",
              "ml_lower": 124017.92,
              "ml_upper": 604707.24,
              "auto_lower": 124017.92,
              "auto_upper": 604707.24,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 107,
            "refseq_count": 8,
            "final_count": 107,
            "filtered_out_count": 0,
            "pass_count": 93,
            "warn_count": 17,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Actinobacillus_lignieresii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2400000.0,
              "final_lower": 2100000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2182559.6,
              "ml_upper": 2377048.0,
              "auto_lower": 2182559.6,
              "auto_upper": 2341702.2,
              "refseq_lower": 2377048.0,
              "refseq_upper": 2377048.0
            },
            {
              "metric": "GC_Content",
              "lower": 41.01,
              "upper": 41.24,
              "final_lower": 41.01,
              "final_upper": 41.24,
              "warn_lower": 41.03,
              "warn_upper": 41.22,
              "source": "computed",
              "ml_lower": 41.0198,
              "ml_upper": 41.2369,
              "auto_lower": 41.01982,
              "auto_upper": 41.23694,
              "refseq_lower": 41.1454,
              "refseq_upper": 41.1454
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2400.0,
              "final_lower": 2000.0,
              "final_upper": 2400.0,
              "warn_lower": 2000.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 2047.6,
              "ml_upper": 2336.0,
              "auto_lower": 2047.6,
              "auto_upper": 2282.6,
              "refseq_lower": 2336.0,
              "refseq_upper": 2336.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.05,
              "refseq_upper": 93.05
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.57,
              "auto_lower": 0.0,
              "auto_upper": 0.47600000000000137,
              "refseq_lower": 0.57,
              "refseq_upper": 0.57
            },
            {
              "metric": "N50",
              "lower": 36000.0,
              "upper": null,
              "final_lower": 36000.0,
              "final_upper": null,
              "warn_lower": 42000.0,
              "warn_upper": 171068.4,
              "source": "computed",
              "ml_lower": 36499.8,
              "ml_upper": 171068.4,
              "auto_lower": 36499.8,
              "auto_upper": 171068.4,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 160.0,
              "final_lower": null,
              "final_upper": 160.0,
              "warn_lower": 44.0,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 44.0,
              "ml_upper": 159.0,
              "auto_lower": 44.0,
              "auto_upper": 159.00000000000023,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 91559.8,
              "warn_upper": 407169.2,
              "source": "computed",
              "ml_lower": 91559.8,
              "ml_upper": 407169.2,
              "auto_lower": 91559.8,
              "auto_upper": 407169.2000000009,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 481,
            "refseq_count": 1,
            "final_count": 481,
            "filtered_out_count": 0,
            "pass_count": 445,
            "warn_count": 36,
            "fail_count": 32
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Aerococcus_urinae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2200000.0,
              "final_lower": 1900000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1900214.98,
              "ml_upper": 2143377.62,
              "auto_lower": 1900214.98,
              "auto_upper": 2143377.62,
              "refseq_lower": 1953948.44,
              "refseq_upper": 2062983.44
            },
            {
              "metric": "GC_Content",
              "lower": 41.71,
              "upper": 42.61,
              "final_lower": 41.71,
              "final_upper": 42.61,
              "warn_lower": 41.72,
              "warn_upper": 42.59,
              "source": "computed",
              "ml_lower": 41.7139,
              "ml_upper": 42.602,
              "auto_lower": 41.713896000000005,
              "auto_upper": 42.592517,
              "refseq_lower": 41.904486,
              "refseq_upper": 42.601862
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2000.0,
              "final_lower": 1700.0,
              "final_upper": 2000.0,
              "warn_lower": 1700.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1700.0,
              "ml_upper": 1948.0,
              "auto_lower": 1700.0,
              "auto_upper": 1932.0,
              "refseq_lower": 1788.46,
              "refseq_upper": 1945.5
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 92.7,
              "ml_upper": 99.99,
              "auto_lower": 99.9188,
              "auto_upper": 99.99,
              "refseq_lower": 92.7882,
              "refseq_upper": 97.86
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.15,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.15,
              "ml_upper": 3.27,
              "auto_lower": 0.1494,
              "auto_upper": 0.8173000000000005,
              "refseq_lower": 2.68,
              "refseq_upper": 3.2654
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 75000.0,
              "warn_upper": 553859.09,
              "source": "computed",
              "ml_lower": 59405.64,
              "ml_upper": 553859.09,
              "auto_lower": 59405.64,
              "auto_upper": 553859.0900000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 19.0,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 19.0,
              "ml_upper": 109.96,
              "auto_lower": 19.0,
              "auto_upper": 109.96000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 175144.69,
              "warn_upper": 751356.7,
              "source": "computed",
              "ml_lower": 175144.69,
              "ml_upper": 751356.7,
              "auto_lower": 175144.69,
              "auto_upper": 751356.7000000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 95,
            "refseq_count": 5,
            "final_count": 95,
            "filtered_out_count": 0,
            "pass_count": 91,
            "warn_count": 8,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Aeromonas_caviae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 5400000.0,
              "final_lower": 4200000.0,
              "final_upper": 5400000.0,
              "warn_lower": 4200000.0,
              "warn_upper": 4900000.0,
              "source": "computed",
              "ml_lower": 4251051.32,
              "ml_upper": 5317260.0,
              "auto_lower": 4251051.325,
              "auto_upper": 4970911.905000001,
              "refseq_lower": 4372365.5,
              "refseq_upper": 5314153.2
            },
            {
              "metric": "GC_Content",
              "lower": 60.36,
              "upper": 62.07,
              "final_lower": 60.36,
              "final_upper": 62.07,
              "warn_lower": 60.89,
              "warn_upper": 62.0,
              "source": "computed",
              "ml_lower": 60.3651,
              "ml_upper": 62.0613,
              "auto_lower": 60.6914275,
              "auto_upper": 62.061265,
              "refseq_lower": 60.37533,
              "refseq_upper": 61.82792
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3800.0,
              "upper": 5200.0,
              "final_lower": 3800.0,
              "final_upper": 5200.0,
              "warn_lower": 3800.0,
              "warn_upper": 4700.0,
              "source": "computed",
              "ml_lower": 3877.36,
              "ml_upper": 5133.0,
              "auto_lower": 3877.355,
              "auto_upper": 4791.515,
              "refseq_lower": 4069.8,
              "refseq_upper": 5110.2
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.11,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.209,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.96,
              "auto_lower": 0.0,
              "auto_upper": 0.8921500000000003,
              "refseq_lower": 0.28500000000000003,
              "refseq_upper": 4.93400000000001
            },
            {
              "metric": "N50",
              "lower": 27000.0,
              "upper": null,
              "final_lower": 27000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 498465.85,
              "source": "computed",
              "ml_lower": 27546.78,
              "ml_upper": 498465.85,
              "auto_lower": 27546.78,
              "auto_upper": 498465.8450000043,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 610.0,
              "final_lower": null,
              "final_upper": 610.0,
              "warn_lower": 44.0,
              "warn_upper": 450.0,
              "source": "computed",
              "ml_lower": 44.0,
              "ml_upper": 609.46,
              "auto_lower": 44.0,
              "auto_upper": 609.4600000000014,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 102344.82,
              "warn_upper": 1238102.43,
              "source": "computed",
              "ml_lower": 102344.82,
              "ml_upper": 1238102.43,
              "auto_lower": 102344.82,
              "auto_upper": 1238102.4300000006,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 758,
            "refseq_count": 61,
            "final_count": 758,
            "filtered_out_count": 0,
            "pass_count": 722,
            "warn_count": 60,
            "fail_count": 43
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Aeromonas_dhakensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5100000.0,
              "final_lower": 4600000.0,
              "final_upper": 5100000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5000000.0,
              "source": "computed",
              "ml_lower": 4630875.38,
              "ml_upper": 5043286.0,
              "auto_lower": 4630875.38,
              "auto_upper": 4992073.76,
              "refseq_lower": 4707869.06,
              "refseq_upper": 5041799.62
            },
            {
              "metric": "GC_Content",
              "lower": 60.97,
              "upper": 61.98,
              "final_lower": 60.97,
              "final_upper": 61.98,
              "warn_lower": 61.24,
              "warn_upper": 61.96,
              "source": "computed",
              "ml_lower": 60.9725,
              "ml_upper": 61.9708,
              "auto_lower": 61.151,
              "auto_upper": 61.970775999999994,
              "refseq_lower": 60.97278,
              "refseq_upper": 61.798556000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 4700.0,
              "final_lower": 4100.0,
              "final_upper": 4700.0,
              "warn_lower": 4100.0,
              "warn_upper": 4500.0,
              "source": "computed",
              "ml_lower": 4125.36,
              "ml_upper": 4700.0,
              "auto_lower": 4125.36,
              "auto_upper": 4558.28,
              "refseq_lower": 4344.4,
              "refseq_upper": 4696.355
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.12,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.309,
              "refseq_upper": 99.9944
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.12,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.12,
              "ml_upper": 0.66,
              "auto_lower": 0.1178,
              "auto_upper": 0.65,
              "refseq_lower": 0.13,
              "refseq_upper": 0.6558
            },
            {
              "metric": "N50",
              "lower": 61000.0,
              "upper": null,
              "final_lower": 61000.0,
              "final_upper": null,
              "warn_lower": 63000.0,
              "warn_upper": 917678.94,
              "source": "computed",
              "ml_lower": 61753.36,
              "ml_upper": 917678.94,
              "auto_lower": 61753.36,
              "auto_upper": 917678.9399999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 38.9,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 38.9,
              "ml_upper": 174.54,
              "auto_lower": 38.9,
              "auto_upper": 174.54,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 147013.06,
              "warn_upper": 1726260.86,
              "source": "computed",
              "ml_lower": 147013.06,
              "ml_upper": 1726260.86,
              "auto_lower": 147013.06,
              "auto_upper": 1726260.86,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 157,
            "refseq_count": 29,
            "final_count": 157,
            "filtered_out_count": 0,
            "pass_count": 158,
            "warn_count": 15,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Aeromonas_hydrophila": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5700000.0,
              "final_lower": 4400000.0,
              "final_upper": 5700000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4496339.0,
              "ml_upper": 5633455.0,
              "auto_lower": 4650965.2,
              "auto_upper": 5387908.799999999,
              "refseq_lower": 4508050.98,
              "refseq_upper": 5564004.149999999
            },
            {
              "metric": "GC_Content",
              "lower": 60.3,
              "upper": 62.02,
              "final_lower": 60.3,
              "final_upper": 62.02,
              "warn_lower": 60.73,
              "warn_upper": 61.65,
              "source": "computed",
              "ml_lower": 60.3014,
              "ml_upper": 62.0126,
              "auto_lower": 60.65124,
              "auto_upper": 61.689,
              "refseq_lower": 60.329816,
              "refseq_upper": 61.894718
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4000.0,
              "upper": 5400.0,
              "final_lower": 4000.0,
              "final_upper": 5400.0,
              "warn_lower": 4100.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 4093.0,
              "ml_upper": 5341.0,
              "auto_lower": 4184.6,
              "auto_upper": 5003.2,
              "refseq_lower": 4121.49,
              "refseq_upper": 5268.849999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.22,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 89.7824,
              "refseq_upper": 99.3756
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.16,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.16,
              "ml_upper": 7.55,
              "auto_lower": 0.16,
              "auto_upper": 1.44,
              "refseq_lower": 0.7596,
              "refseq_upper": 6.917299999999992
            },
            {
              "metric": "N50",
              "lower": 44000.0,
              "upper": null,
              "final_lower": 44000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 763787.4,
              "source": "computed",
              "ml_lower": 44710.4,
              "ml_upper": 763787.4,
              "auto_lower": 44710.4,
              "auto_upper": 763787.3999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 320.0,
              "final_lower": null,
              "final_upper": 320.0,
              "warn_lower": 39.8,
              "warn_upper": 210.0,
              "source": "computed",
              "ml_lower": 39.8,
              "ml_upper": 311.2,
              "auto_lower": 39.8,
              "auto_upper": 311.1999999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 129008.4,
              "warn_upper": 1334946.0,
              "source": "computed",
              "ml_lower": 129008.4,
              "ml_upper": 1334946.0,
              "auto_lower": 129008.4,
              "auto_upper": 1334946.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 161,
            "refseq_count": 75,
            "final_count": 161,
            "filtered_out_count": 0,
            "pass_count": 153,
            "warn_count": 10,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Aeromonas_salmonicida": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 5200000.0,
              "final_lower": 4300000.0,
              "final_upper": 5200000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4395896.55,
              "ml_upper": 5191207.0,
              "auto_lower": 4395896.55,
              "auto_upper": 5131935.100000001,
              "refseq_lower": 4624259.4,
              "refseq_upper": 5183748.2
            },
            {
              "metric": "GC_Content",
              "lower": 58.14,
              "upper": 59.04,
              "final_lower": 58.14,
              "final_upper": 59.04,
              "warn_lower": 58.27,
              "warn_upper": 58.87,
              "source": "computed",
              "ml_lower": 58.1425,
              "ml_upper": 59.0309,
              "auto_lower": 58.23023,
              "auto_upper": 58.90388,
              "refseq_lower": 58.14634,
              "refseq_upper": 59.006460000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4200.0,
              "upper": 5000.0,
              "final_lower": 4200.0,
              "final_upper": 5000.0,
              "warn_lower": 4200.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 4214.9,
              "ml_upper": 4986.0,
              "auto_lower": 4214.9,
              "auto_upper": 4882.650000000001,
              "refseq_lower": 4252.0,
              "refseq_upper": 4985.8
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.04,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.14800000000001,
              "refseq_upper": 99.956
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.13,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 1.74,
              "auto_lower": 0.188,
              "auto_upper": 1.519500000000001,
              "refseq_lower": 0.13,
              "refseq_upper": 1.74
            },
            {
              "metric": "N50",
              "lower": 25000.0,
              "upper": null,
              "final_lower": 25000.0,
              "final_upper": null,
              "warn_lower": 39000.0,
              "warn_upper": 160853.9,
              "source": "computed",
              "ml_lower": 25804.25,
              "ml_upper": 160853.9,
              "auto_lower": 25804.25,
              "auto_upper": 160853.9,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 490.0,
              "final_lower": null,
              "final_upper": 490.0,
              "warn_lower": 88.9,
              "warn_upper": 350.0,
              "source": "computed",
              "ml_lower": 88.9,
              "ml_upper": 487.0,
              "auto_lower": 88.9,
              "auto_upper": 487.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 116127.95,
              "warn_upper": 485582.9,
              "source": "computed",
              "ml_lower": 116127.95,
              "ml_upper": 485582.9,
              "auto_lower": 116127.95,
              "auto_upper": 485582.90000000084,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 291,
            "refseq_count": 41,
            "final_count": 291,
            "filtered_out_count": 0,
            "pass_count": 269,
            "warn_count": 35,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Aeromonas_veronii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 5300000.0,
              "final_lower": 4300000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 5000000.0,
              "source": "computed",
              "ml_lower": 4306227.32,
              "ml_upper": 5204591.0,
              "auto_lower": 4306227.32,
              "auto_upper": 5004209.0,
              "refseq_lower": 4458811.02,
              "refseq_upper": 5202367.82
            },
            {
              "metric": "GC_Content",
              "lower": 57.97,
              "upper": 61.01,
              "final_lower": 57.97,
              "final_upper": 61.01,
              "warn_lower": 58.17,
              "warn_upper": 59.04,
              "source": "computed",
              "ml_lower": 57.9736,
              "ml_upper": 61.001,
              "auto_lower": 58.068723999999996,
              "auto_upper": 59.0807,
              "refseq_lower": 57.9792925,
              "refseq_upper": 60.278225
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 5000.0,
              "final_lower": 3900.0,
              "final_upper": 5000.0,
              "warn_lower": 3900.0,
              "warn_upper": 4700.0,
              "source": "computed",
              "ml_lower": 3909.8,
              "ml_upper": 4948.0,
              "auto_lower": 3909.8,
              "auto_upper": 4739.36,
              "refseq_lower": 4111.035,
              "refseq_upper": 4923.505
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.13,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 91.0891,
              "refseq_upper": 99.521
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 11.0,
              "final_lower": null,
              "final_upper": 11.0,
              "warn_lower": 0.04,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 10.98,
              "auto_lower": 0.04,
              "auto_upper": 0.9536000000000001,
              "refseq_lower": 0.20795000000000002,
              "refseq_upper": 9.241200000000006
            },
            {
              "metric": "N50",
              "lower": 35000.0,
              "upper": null,
              "final_lower": 35000.0,
              "final_upper": null,
              "warn_lower": 65000.0,
              "warn_upper": 704305.08,
              "source": "computed",
              "ml_lower": 35185.56,
              "ml_upper": 704305.08,
              "auto_lower": 35185.56,
              "auto_upper": 704305.0800000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 38.0,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 38.0,
              "ml_upper": 323.08,
              "auto_lower": 38.0,
              "auto_upper": 323.08000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 117565.84,
              "warn_upper": 1318612.24,
              "source": "computed",
              "ml_lower": 117565.84,
              "ml_upper": 1318612.24,
              "auto_lower": 117565.84,
              "auto_upper": 1318612.24,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 377,
            "refseq_count": 70,
            "final_count": 377,
            "filtered_out_count": 0,
            "pass_count": 357,
            "warn_count": 26,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Agrobacterium_fabacearum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 6500000.0,
              "final_lower": 4600000.0,
              "final_upper": 6500000.0,
              "warn_lower": 5400000.0,
              "warn_upper": 6400000.0,
              "source": "computed",
              "ml_lower": 4675914.0,
              "ml_upper": 6469646.0,
              "auto_lower": 5409170.57,
              "auto_upper": 6446688.705000003,
              "refseq_lower": 4793884.55,
              "refseq_upper": 6422139.94
            },
            {
              "metric": "GC_Content",
              "lower": 57.16,
              "upper": 60.03,
              "final_lower": 57.16,
              "final_upper": 60.03,
              "warn_lower": 58.31,
              "warn_upper": 58.62,
              "source": "computed",
              "ml_lower": 57.1666,
              "ml_upper": 60.0262,
              "auto_lower": 58.264793,
              "auto_upper": 58.625545,
              "refseq_lower": 57.479742,
              "refseq_upper": 59.919683000000006
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 6200.0,
              "final_lower": 4300.0,
              "final_upper": 6200.0,
              "warn_lower": 5100.0,
              "warn_upper": 6100.0,
              "source": "computed",
              "ml_lower": 4356.0,
              "ml_upper": 6147.09,
              "auto_lower": 5066.145,
              "auto_upper": 6147.085000000003,
              "refseq_lower": 4491.72,
              "refseq_upper": 6122.35
            },
            {
              "metric": "Completeness_Specific",
              "lower": 88.0,
              "upper": null,
              "final_lower": 88.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 88.93,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 89.2055,
              "refseq_upper": 97.54260000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 16.0,
              "final_lower": null,
              "final_upper": 16.0,
              "warn_lower": 0.04,
              "warn_upper": 4.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 15.92,
              "auto_lower": 0.044250000000000005,
              "auto_upper": 3.8195500000000013,
              "refseq_lower": 2.7083,
              "refseq_upper": 15.548800000000002
            },
            {
              "metric": "N50",
              "lower": 274000.0,
              "upper": null,
              "final_lower": 274000.0,
              "final_upper": null,
              "warn_lower": 302000.0,
              "warn_upper": 1088500.93,
              "source": "computed",
              "ml_lower": 274854.09,
              "ml_upper": 1088500.93,
              "auto_lower": 274854.09,
              "auto_upper": 1088500.9300000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 22.88,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 22.88,
              "ml_upper": 109.07,
              "auto_lower": 22.885,
              "auto_upper": 109.07000000000016,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 615651.87,
              "warn_upper": 2489026.86,
              "source": "computed",
              "ml_lower": 615651.87,
              "ml_upper": 2489026.86,
              "auto_lower": 615651.87,
              "auto_upper": 2489026.8550000004,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 178,
            "refseq_count": 59,
            "final_count": 178,
            "filtered_out_count": 0,
            "pass_count": 157,
            "warn_count": 23,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Agrobacterium_pusense": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6400000.0,
              "final_lower": 4900000.0,
              "final_upper": 6400000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 6400000.0,
              "source": "computed",
              "ml_lower": 4957912.0,
              "ml_upper": 6388230.28,
              "auto_lower": 5185082.48,
              "auto_upper": 6388230.28,
              "refseq_lower": 4963191.01,
              "refseq_upper": 6118380.965
            },
            {
              "metric": "GC_Content",
              "lower": 59.09,
              "upper": 59.32,
              "final_lower": 59.09,
              "final_upper": 59.32,
              "warn_lower": 59.1,
              "warn_upper": 59.29,
              "source": "computed",
              "ml_lower": 59.0935,
              "ml_upper": 59.3116,
              "auto_lower": 59.10228,
              "auto_upper": 59.303048,
              "refseq_lower": 59.093874,
              "refseq_upper": 59.3113525
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4600.0,
              "upper": 6300.0,
              "final_lower": 4600.0,
              "final_upper": 6300.0,
              "warn_lower": 4900.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 4689.0,
              "ml_upper": 6290.88,
              "auto_lower": 4885.24,
              "auto_upper": 6290.88,
              "refseq_lower": 4692.19,
              "refseq_upper": 5897.145
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.65,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.67035,
              "refseq_upper": 99.59835
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.03,
              "warn_upper": 5.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 5.39,
              "auto_lower": 0.030400000000000003,
              "auto_upper": 5.3944,
              "refseq_lower": 0.29109999999999997,
              "refseq_upper": 2.77615
            },
            {
              "metric": "N50",
              "lower": 177000.0,
              "upper": null,
              "final_lower": 177000.0,
              "final_upper": null,
              "warn_lower": 217000.0,
              "warn_upper": 1030346.36,
              "source": "computed",
              "ml_lower": 177806.96,
              "ml_upper": 1030346.36,
              "auto_lower": 177806.96,
              "auto_upper": 1030346.36,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 25.52,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 25.52,
              "ml_upper": 227.44,
              "auto_lower": 25.52,
              "auto_upper": 227.44000000000023,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 463062.56,
              "warn_upper": 2001629.88,
              "source": "computed",
              "ml_lower": 463062.56,
              "ml_upper": 2001629.88,
              "auto_lower": 463062.56,
              "auto_upper": 2001629.880000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 105,
            "refseq_count": 12,
            "final_count": 105,
            "filtered_out_count": 0,
            "pass_count": 98,
            "warn_count": 7,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "frac_high_contamination",
                  "flag": "warn",
                  "fraction": 0.0286,
                  "count": 3,
                  "n": 105,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Agrobacterium_tumefaciens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 6500000.0,
              "final_lower": 4600000.0,
              "final_upper": 6500000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 6100000.0,
              "source": "computed",
              "ml_lower": 4675914.0,
              "ml_upper": 6469646.0,
              "auto_lower": 4915776.52,
              "auto_upper": 6192817.52,
              "refseq_lower": 4793884.55,
              "refseq_upper": 6422139.94
            },
            {
              "metric": "GC_Content",
              "lower": 57.16,
              "upper": 60.03,
              "final_lower": 57.16,
              "final_upper": 60.03,
              "warn_lower": 59.08,
              "warn_upper": 59.66,
              "source": "computed",
              "ml_lower": 57.1666,
              "ml_upper": 60.0262,
              "auto_lower": 59.045228,
              "auto_upper": 59.713072000000004,
              "refseq_lower": 57.479742,
              "refseq_upper": 59.919683000000006
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 6200.0,
              "final_lower": 4300.0,
              "final_upper": 6200.0,
              "warn_lower": 4500.0,
              "warn_upper": 5800.0,
              "source": "computed",
              "ml_lower": 4356.0,
              "ml_upper": 6147.0,
              "auto_lower": 4565.52,
              "auto_upper": 5918.2,
              "refseq_lower": 4491.72,
              "refseq_upper": 6122.35
            },
            {
              "metric": "Completeness_Specific",
              "lower": 88.0,
              "upper": null,
              "final_lower": 88.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 88.93,
              "ml_upper": 100.0,
              "auto_lower": 99.8112,
              "auto_upper": 100.0,
              "refseq_lower": 89.2055,
              "refseq_upper": 97.54260000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 16.0,
              "final_lower": null,
              "final_upper": 16.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 15.92,
              "auto_lower": 0.0548,
              "auto_upper": 2.3331999999999993,
              "refseq_lower": 2.7083,
              "refseq_upper": 15.548800000000002
            },
            {
              "metric": "N50",
              "lower": 119000.0,
              "upper": null,
              "final_lower": 119000.0,
              "final_upper": null,
              "warn_lower": 170000.0,
              "warn_upper": 1106683.48,
              "source": "computed",
              "ml_lower": 119638.72,
              "ml_upper": 1106683.48,
              "auto_lower": 119638.72,
              "auto_upper": 1106683.48,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 18.0,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 18.0,
              "ml_upper": 125.44,
              "auto_lower": 18.0,
              "auto_upper": 125.44,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 339379.64,
              "warn_upper": 2603148.0,
              "source": "computed",
              "ml_lower": 339379.64,
              "ml_upper": 2603148.0,
              "auto_lower": 339379.64,
              "auto_upper": 2603148.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 113,
            "refseq_count": 59,
            "final_count": 113,
            "filtered_out_count": 0,
            "pass_count": 110,
            "warn_count": 12,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Aliarcobacter_butzleri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2700000.0,
              "final_lower": 2000000.0,
              "final_upper": 2700000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2032910.85,
              "ml_upper": 2629648.0,
              "auto_lower": 2032910.85,
              "auto_upper": 2513129.3999999994,
              "refseq_lower": 2087824.52,
              "refseq_upper": 2624108.62
            },
            {
              "metric": "GC_Content",
              "lower": 26.73,
              "upper": 27.27,
              "final_lower": 26.73,
              "final_upper": 27.27,
              "warn_lower": 26.75,
              "warn_upper": 27.09,
              "source": "computed",
              "ml_lower": 26.7318,
              "ml_upper": 27.2608,
              "auto_lower": 26.73182,
              "auto_upper": 27.227445,
              "refseq_lower": 26.952607999999998,
              "refseq_upper": 27.254398
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2700.0,
              "final_lower": 2000.0,
              "final_upper": 2700.0,
              "warn_lower": 2000.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 2087.15,
              "ml_upper": 2668.0,
              "auto_lower": 2087.15,
              "auto_upper": 2619.0,
              "refseq_lower": 2159.62,
              "refseq_upper": 2663.38
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.69,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.7516,
              "refseq_upper": 99.67
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 30.0,
              "final_lower": null,
              "final_upper": 30.0,
              "warn_lower": 0.07,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 29.81,
              "auto_lower": 0.07150000000000001,
              "auto_upper": 1.2064999999999984,
              "refseq_lower": 0.35,
              "refseq_upper": 25.79060000000002
            },
            {
              "metric": "N50",
              "lower": 27000.0,
              "upper": null,
              "final_lower": 27000.0,
              "final_upper": null,
              "warn_lower": 39000.0,
              "warn_upper": 293291.65,
              "source": "computed",
              "ml_lower": 27684.9,
              "ml_upper": 293291.65,
              "auto_lower": 27684.9,
              "auto_upper": 293291.64999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 18.15,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 18.15,
              "ml_upper": 190.85,
              "auto_lower": 18.15,
              "auto_upper": 190.85,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 107719.2,
              "warn_upper": 559267.95,
              "source": "computed",
              "ml_lower": 107719.2,
              "ml_upper": 559267.95,
              "auto_lower": 107719.2,
              "auto_upper": 559267.95,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 231,
            "refseq_count": 45,
            "final_count": 231,
            "filtered_out_count": 0,
            "pass_count": 210,
            "warn_count": 21,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Aliivibrio_fischeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4000000.0,
              "upper": 4600000.0,
              "final_lower": 4000000.0,
              "final_upper": 4600000.0,
              "warn_lower": 4100000.0,
              "warn_upper": 4500000.0,
              "source": "computed",
              "ml_lower": 4072964.24,
              "ml_upper": 4503206.0,
              "auto_lower": 4072964.245,
              "auto_upper": 4471672.635000001,
              "refseq_lower": 4274865.44,
              "refseq_upper": 4502058.56
            },
            {
              "metric": "GC_Content",
              "lower": 38.08,
              "upper": 38.6,
              "final_lower": 38.08,
              "final_upper": 38.6,
              "warn_lower": 38.09,
              "warn_upper": 38.54,
              "source": "computed",
              "ml_lower": 38.0885,
              "ml_upper": 38.5947,
              "auto_lower": 38.088481,
              "auto_upper": 38.594663000000004,
              "refseq_lower": 38.3210275,
              "refseq_upper": 38.346272500000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4300.0,
              "final_lower": 3600.0,
              "final_upper": 4300.0,
              "warn_lower": 3700.0,
              "warn_upper": 4200.0,
              "source": "computed",
              "ml_lower": 3674.83,
              "ml_upper": 4206.16,
              "auto_lower": 3674.83,
              "auto_upper": 4206.155000000002,
              "refseq_lower": 3953.67,
              "refseq_upper": 4086.33
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.39,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.4165,
              "refseq_upper": 98.6635
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 12.0,
              "final_lower": null,
              "final_upper": 12.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 11.62,
              "auto_lower": 0.00915,
              "auto_upper": 0.39255000000000023,
              "refseq_lower": 0.34664999999999996,
              "refseq_upper": 11.56335
            },
            {
              "metric": "N50",
              "lower": 9000.0,
              "upper": null,
              "final_lower": 9000.0,
              "final_upper": null,
              "warn_lower": 10000.0,
              "warn_upper": 550890.58,
              "source": "computed",
              "ml_lower": 9362.46,
              "ml_upper": 550890.58,
              "auto_lower": 9362.455,
              "auto_upper": 550890.5800000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 800.0,
              "final_lower": null,
              "final_upper": 800.0,
              "warn_lower": 52.92,
              "warn_upper": 710.0,
              "source": "computed",
              "ml_lower": 52.92,
              "ml_upper": 797.08,
              "auto_lower": 52.915,
              "auto_upper": 797.085,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 43826.56,
              "warn_upper": 1123082.3,
              "source": "computed",
              "ml_lower": 43826.56,
              "ml_upper": 1123082.3,
              "auto_lower": 43826.555,
              "auto_upper": 1123082.305,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 184,
            "refseq_count": 2,
            "final_count": 184,
            "filtered_out_count": 0,
            "pass_count": 175,
            "warn_count": 12,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Alistipes_onderdonkii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3300000.0,
              "upper": 4000000.0,
              "final_lower": 3300000.0,
              "final_upper": 4000000.0,
              "warn_lower": 3400000.0,
              "warn_upper": 4000000.0,
              "source": "computed",
              "ml_lower": 3312673.0,
              "ml_upper": 3981512.34,
              "auto_lower": 3400028.265,
              "auto_upper": 3981512.345,
              "refseq_lower": 3312673.225,
              "refseq_upper": 3868107.925
            },
            {
              "metric": "GC_Content",
              "lower": 57.36,
              "upper": 58.54,
              "final_lower": 57.36,
              "final_upper": 58.54,
              "warn_lower": 57.47,
              "warn_upper": 58.15,
              "source": "computed",
              "ml_lower": 57.3656,
              "ml_upper": 58.5341,
              "auto_lower": 57.365643000000006,
              "auto_upper": 58.534099499999996,
              "refseq_lower": 57.8000675,
              "refseq_upper": 58.249475000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2700.0,
              "upper": 3500.0,
              "final_lower": 2700.0,
              "final_upper": 3500.0,
              "warn_lower": 2700.0,
              "warn_upper": 3500.0,
              "source": "computed",
              "ml_lower": 2785.77,
              "ml_upper": 3493.62,
              "auto_lower": 2785.77,
              "auto_upper": 3493.615,
              "refseq_lower": 2827.05,
              "refseq_upper": 3198.4
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.26,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.26375,
              "refseq_upper": 98.8525
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.19,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.19,
              "ml_upper": 1.44,
              "auto_lower": 0.1877,
              "auto_upper": 1.4446000000000003,
              "refseq_lower": 0.3,
              "refseq_upper": 1.0967500000000001
            },
            {
              "metric": "N50",
              "lower": 82000.0,
              "upper": null,
              "final_lower": 82000.0,
              "final_upper": null,
              "warn_lower": 102000.0,
              "warn_upper": 494013.91,
              "source": "computed",
              "ml_lower": 82065.96,
              "ml_upper": 494013.91,
              "auto_lower": 82065.96,
              "auto_upper": 494013.9100000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 240.0,
              "final_lower": null,
              "final_upper": 240.0,
              "warn_lower": 30.38,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 30.38,
              "ml_upper": 234.0,
              "auto_lower": 30.385,
              "auto_upper": 234.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 231264.03,
              "warn_upper": 821336.79,
              "source": "computed",
              "ml_lower": 231264.03,
              "ml_upper": 821336.79,
              "auto_lower": 231264.03,
              "auto_upper": 821336.7900000006,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 278,
            "refseq_count": 6,
            "final_count": 278,
            "filtered_out_count": 0,
            "pass_count": 243,
            "warn_count": 39,
            "fail_count": 22
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_altitudinis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4000000.0,
              "final_lower": 3600000.0,
              "final_upper": 4000000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3639950.2,
              "ml_upper": 3955013.0,
              "auto_lower": 3639950.2,
              "auto_upper": 3878867.6,
              "refseq_lower": 3680119.175,
              "refseq_upper": 3953877.775
            },
            {
              "metric": "GC_Content",
              "lower": 40.94,
              "upper": 41.55,
              "final_lower": 40.94,
              "final_upper": 41.55,
              "warn_lower": 41.14,
              "warn_upper": 41.35,
              "source": "computed",
              "ml_lower": 40.9485,
              "ml_upper": 41.5445,
              "auto_lower": 41.12698,
              "auto_upper": 41.40246,
              "refseq_lower": 40.9654975,
              "refseq_upper": 41.53761
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4300.0,
              "final_lower": 3600.0,
              "final_upper": 4300.0,
              "warn_lower": 3600.0,
              "warn_upper": 4000.0,
              "source": "computed",
              "ml_lower": 3681.2,
              "ml_upper": 4205.0,
              "auto_lower": 3681.2,
              "auto_upper": 3993.6,
              "refseq_lower": 3793.0,
              "refseq_upper": 4185.5
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.59,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 92.66025,
              "refseq_upper": 99.12
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.59,
              "auto_lower": 0.0,
              "auto_upper": 0.27,
              "refseq_lower": 0.022150000000000003,
              "refseq_upper": 0.59
            },
            {
              "metric": "N50",
              "lower": 153000.0,
              "upper": null,
              "final_lower": 153000.0,
              "final_upper": null,
              "warn_lower": 160000.0,
              "warn_upper": 979907.2,
              "source": "computed",
              "ml_lower": 153327.2,
              "ml_upper": 979907.2,
              "auto_lower": 153327.2,
              "auto_upper": 979907.2,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 80.0,
              "final_lower": null,
              "final_upper": 80.0,
              "warn_lower": 18.4,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 18.4,
              "ml_upper": 77.8,
              "auto_lower": 18.4,
              "auto_upper": 77.79999999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 338210.6,
              "warn_upper": 1072627.2,
              "source": "computed",
              "ml_lower": 338210.6,
              "ml_upper": 1072627.2,
              "auto_lower": 338210.6,
              "auto_upper": 1072627.1999999997,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 81,
            "refseq_count": 66,
            "final_count": 81,
            "filtered_out_count": 0,
            "pass_count": 83,
            "warn_count": 9,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_anthracis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5100000.0,
              "upper": 5800000.0,
              "final_lower": 5100000.0,
              "final_upper": 5800000.0,
              "warn_lower": 5100000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 5131633.08,
              "ml_upper": 5796785.84,
              "auto_lower": 5131633.08,
              "auto_upper": 5796785.84,
              "refseq_lower": 5211222.4,
              "refseq_upper": 5668226.074999999
            },
            {
              "metric": "GC_Content",
              "lower": 35.04,
              "upper": 35.49,
              "final_lower": 35.04,
              "final_upper": 35.49,
              "warn_lower": 35.08,
              "warn_upper": 35.32,
              "source": "computed",
              "ml_lower": 35.0439,
              "ml_upper": 35.484,
              "auto_lower": 35.0438585,
              "auto_upper": 35.372758,
              "refseq_lower": 35.2213475,
              "refseq_upper": 35.46024
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5200.0,
              "upper": 6100.0,
              "final_lower": 5200.0,
              "final_upper": 6100.0,
              "warn_lower": 5300.0,
              "warn_upper": 6000.0,
              "source": "computed",
              "ml_lower": 5240.0,
              "ml_upper": 6062.88,
              "auto_lower": 5240.0,
              "auto_upper": 6062.884999999999,
              "refseq_lower": 5462.3,
              "refseq_upper": 5922.75
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.84,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 94.88050000000001,
              "refseq_upper": 98.76
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 4.94,
              "auto_lower": 0.01,
              "auto_upper": 1.0642999999999985,
              "refseq_lower": 0.37,
              "refseq_upper": 3.6574999999999784
            },
            {
              "metric": "N50",
              "lower": 15000.0,
              "upper": null,
              "final_lower": 15000.0,
              "final_upper": null,
              "warn_lower": 26000.0,
              "warn_upper": 1198335.39,
              "source": "computed",
              "ml_lower": 15652.72,
              "ml_upper": 1198335.39,
              "auto_lower": 15652.715,
              "auto_upper": 1198335.39,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 740.0,
              "final_lower": null,
              "final_upper": 740.0,
              "warn_lower": 30.6,
              "warn_upper": 580.0,
              "source": "computed",
              "ml_lower": 30.6,
              "ml_upper": 735.62,
              "auto_lower": 30.595,
              "auto_upper": 735.6199999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90050.19,
              "warn_upper": 1772429.22,
              "source": "computed",
              "ml_lower": 90050.19,
              "ml_upper": 1772429.22,
              "auto_lower": 90050.19,
              "auto_upper": 1772429.225,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1520,
            "refseq_count": 136,
            "final_count": 1520,
            "filtered_out_count": 0,
            "pass_count": 1419,
            "warn_count": 108,
            "fail_count": 116
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_bombysepticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 6700000.0,
              "final_lower": 5200000.0,
              "final_upper": 6700000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6600000.0,
              "source": "computed",
              "ml_lower": 5225804.95,
              "ml_upper": 6666120.4,
              "auto_lower": 5225804.95,
              "auto_upper": 6666120.4,
              "refseq_lower": 5870790.08,
              "refseq_upper": 5873577.92
            },
            {
              "metric": "GC_Content",
              "lower": 34.68,
              "upper": 35.19,
              "final_lower": 34.68,
              "final_upper": 35.19,
              "warn_lower": 34.69,
              "warn_upper": 35.12,
              "source": "computed",
              "ml_lower": 34.68,
              "ml_upper": 35.188,
              "auto_lower": 34.67997,
              "auto_upper": 35.188045,
              "refseq_lower": 34.9340165,
              "refseq_upper": 34.9372835
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5200.0,
              "upper": 7300.0,
              "final_lower": 5200.0,
              "final_upper": 7300.0,
              "warn_lower": 5400.0,
              "warn_upper": 7100.0,
              "source": "computed",
              "ml_lower": 5236.65,
              "ml_upper": 7214.0,
              "auto_lower": 5236.65,
              "auto_upper": 7214.0,
              "refseq_lower": 5942.29,
              "refseq_upper": 5999.71
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.12,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.12145000000001,
              "refseq_upper": 99.40854999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.73,
              "auto_lower": 0.0,
              "auto_upper": 0.7270000000000004,
              "refseq_lower": 0.050100000000000006,
              "refseq_upper": 0.0699
            },
            {
              "metric": "N50",
              "lower": 15000.0,
              "upper": null,
              "final_lower": 15000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 668132.6,
              "source": "computed",
              "ml_lower": 15924.05,
              "ml_upper": 668132.6,
              "auto_lower": 15924.05,
              "auto_upper": 668132.6000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 1400.0,
              "final_lower": null,
              "final_upper": 1400.0,
              "warn_lower": 50.65,
              "warn_upper": 1000.0,
              "source": "computed",
              "ml_lower": 50.65,
              "ml_upper": 1392.7,
              "auto_lower": 50.65,
              "auto_upper": 1392.700000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 82468.3,
              "warn_upper": 1505859.4,
              "source": "computed",
              "ml_lower": 82468.3,
              "ml_upper": 1505859.4,
              "auto_lower": 82468.3,
              "auto_upper": 1505859.4000000004,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 531,
            "refseq_count": 2,
            "final_count": 531,
            "filtered_out_count": 0,
            "pass_count": 491,
            "warn_count": 53,
            "fail_count": 52
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_cereus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6800000.0,
              "final_lower": 4900000.0,
              "final_upper": 6800000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 6700000.0,
              "source": "computed",
              "ml_lower": 4981897.38,
              "ml_upper": 6734937.54,
              "auto_lower": 4981897.375,
              "auto_upper": 6734937.544999999,
              "refseq_lower": 5224113.965,
              "refseq_upper": 6544649.91
            },
            {
              "metric": "GC_Content",
              "lower": 34.68,
              "upper": 35.64,
              "final_lower": 34.68,
              "final_upper": 35.64,
              "warn_lower": 34.74,
              "warn_upper": 35.42,
              "source": "computed",
              "ml_lower": 34.683,
              "ml_upper": 35.6308,
              "auto_lower": 34.682998,
              "auto_upper": 35.56745,
              "refseq_lower": 34.8186765,
              "refseq_upper": 35.5519595
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5000.0,
              "upper": 7100.0,
              "final_lower": 5000.0,
              "final_upper": 7100.0,
              "warn_lower": 5200.0,
              "warn_upper": 6900.0,
              "source": "computed",
              "ml_lower": 5055.23,
              "ml_upper": 7065.12,
              "auto_lower": 5055.23,
              "auto_upper": 7065.12,
              "refseq_lower": 5360.165,
              "refseq_upper": 6640.075
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.97,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 96.23055,
              "refseq_upper": 99.22
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.24,
              "auto_lower": 0.0,
              "auto_upper": 5.24,
              "refseq_lower": 0.06,
              "refseq_upper": 1.3215999999999997
            },
            {
              "metric": "N50",
              "lower": 8000.0,
              "upper": null,
              "final_lower": 8000.0,
              "final_upper": null,
              "warn_lower": 16000.0,
              "warn_upper": 749011.19,
              "source": "computed",
              "ml_lower": 8535.66,
              "ml_upper": 749011.19,
              "auto_lower": 8535.664999999999,
              "auto_upper": 749011.1949999989,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 1130.0,
              "final_lower": null,
              "final_upper": 1130.0,
              "warn_lower": 39.0,
              "warn_upper": 840.0,
              "source": "computed",
              "ml_lower": 39.0,
              "ml_upper": 1130.0,
              "auto_lower": 39.0,
              "auto_upper": 1130.0049999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 63686.9,
              "warn_upper": 1956351.21,
              "source": "computed",
              "ml_lower": 63686.9,
              "ml_upper": 1956351.21,
              "auto_lower": 63686.895,
              "auto_upper": 1956351.21,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 448,
            "refseq_count": 194,
            "final_count": 448,
            "filtered_out_count": 0,
            "pass_count": 405,
            "warn_count": 44,
            "fail_count": 25
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_licheniformis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4000000.0,
              "upper": 4900000.0,
              "final_lower": 4000000.0,
              "final_upper": 4900000.0,
              "warn_lower": 4000000.0,
              "warn_upper": 4600000.0,
              "source": "computed",
              "ml_lower": 4087498.44,
              "ml_upper": 4824459.0,
              "auto_lower": 4087498.44,
              "auto_upper": 4575192.6,
              "refseq_lower": 4138715.925,
              "refseq_upper": 4784476.55
            },
            {
              "metric": "GC_Content",
              "lower": 45.57,
              "upper": 46.36,
              "final_lower": 45.57,
              "final_upper": 46.36,
              "warn_lower": 45.59,
              "warn_upper": 46.25,
              "source": "computed",
              "ml_lower": 45.5731,
              "ml_upper": 46.3539,
              "auto_lower": 45.57948,
              "auto_upper": 46.254516,
              "refseq_lower": 45.574594499999996,
              "refseq_upper": 46.33203150000001
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5100.0,
              "final_lower": 4100.0,
              "final_upper": 5100.0,
              "warn_lower": 4100.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 4139.66,
              "ml_upper": 5063.0,
              "auto_lower": 4139.66,
              "auto_upper": 4857.199999999999,
              "refseq_lower": 4249.365,
              "refseq_upper": 5041.345
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.16,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 92.30945,
              "refseq_upper": 98.7524
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 5.88,
              "auto_lower": 0.01,
              "auto_upper": 0.8841999999999984,
              "refseq_lower": 0.83,
              "refseq_upper": 5.819
            },
            {
              "metric": "N50",
              "lower": 84000.0,
              "upper": null,
              "final_lower": 84000.0,
              "final_upper": null,
              "warn_lower": 130000.0,
              "warn_upper": 2162561.32,
              "source": "computed",
              "ml_lower": 84658.78,
              "ml_upper": 2162561.32,
              "auto_lower": 84658.78,
              "auto_upper": 2162561.32,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 170.0,
              "final_lower": null,
              "final_upper": 170.0,
              "warn_lower": 19.74,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 19.74,
              "ml_upper": 166.46,
              "auto_lower": 19.74,
              "auto_upper": 166.4599999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 215470.96,
              "warn_upper": 2162561.32,
              "source": "computed",
              "ml_lower": 215470.96,
              "ml_upper": 2162561.32,
              "auto_lower": 215470.96,
              "auto_upper": 2162561.32,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 149,
            "refseq_count": 62,
            "final_count": 149,
            "filtered_out_count": 0,
            "pass_count": 143,
            "warn_count": 15,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Bacillus_mobilis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 6100000.0,
              "final_lower": 5200000.0,
              "final_upper": 6100000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6100000.0,
              "source": "computed",
              "ml_lower": 5285748.47,
              "ml_upper": 6018778.5,
              "auto_lower": 5285748.47,
              "auto_upper": 6018778.505,
              "refseq_lower": 5401772.445,
              "refseq_upper": 5731530.555
            },
            {
              "metric": "GC_Content",
              "lower": 35.15,
              "upper": 35.63,
              "final_lower": 35.15,
              "final_upper": 35.63,
              "warn_lower": 35.18,
              "warn_upper": 35.52,
              "source": "computed",
              "ml_lower": 35.1575,
              "ml_upper": 35.6273,
              "auto_lower": 35.1574565,
              "auto_upper": 35.5424905,
              "refseq_lower": 35.567003,
              "refseq_upper": 35.626996999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6300.0,
              "final_lower": 5300.0,
              "final_upper": 6300.0,
              "warn_lower": 5300.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 5347.29,
              "ml_upper": 6240.3,
              "auto_lower": 5347.29,
              "auto_upper": 6240.295,
              "refseq_lower": 5629.61,
              "refseq_upper": 5948.39
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.41,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.41,
              "refseq_upper": 99.41
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.6,
              "auto_lower": 0.0,
              "auto_upper": 1.6,
              "refseq_lower": 0.11005,
              "refseq_upper": 0.11995
            },
            {
              "metric": "N50",
              "lower": 17000.0,
              "upper": null,
              "final_lower": 17000.0,
              "final_upper": null,
              "warn_lower": 19000.0,
              "warn_upper": 275465.01,
              "source": "computed",
              "ml_lower": 17819.83,
              "ml_upper": 275465.01,
              "auto_lower": 17819.83,
              "auto_upper": 275465.01499999966,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 790.0,
              "final_lower": null,
              "final_upper": 790.0,
              "warn_lower": 75.64,
              "warn_upper": 720.0,
              "source": "computed",
              "ml_lower": 75.64,
              "ml_upper": 786.31,
              "auto_lower": 75.645,
              "auto_upper": 786.3099999999988,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 113467.26,
              "warn_upper": 782806.03,
              "source": "computed",
              "ml_lower": 113467.26,
              "ml_upper": 782806.03,
              "auto_lower": 113467.265,
              "auto_upper": 782806.0299999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 130,
            "refseq_count": 2,
            "final_count": 130,
            "filtered_out_count": 0,
            "pass_count": 126,
            "warn_count": 15,
            "fail_count": 7
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_mycoides": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5100000.0,
              "upper": 6600000.0,
              "final_lower": 5100000.0,
              "final_upper": 6600000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 6100000.0,
              "source": "computed",
              "ml_lower": 5177188.48,
              "ml_upper": 6558090.0,
              "auto_lower": 5177188.48,
              "auto_upper": 6229993.64,
              "refseq_lower": 5339587.86,
              "refseq_upper": 6498078.2700000005
            },
            {
              "metric": "GC_Content",
              "lower": 35.03,
              "upper": 35.78,
              "final_lower": 35.03,
              "final_upper": 35.78,
              "warn_lower": 35.08,
              "warn_upper": 35.64,
              "source": "computed",
              "ml_lower": 35.032,
              "ml_upper": 35.7729,
              "auto_lower": 35.03202,
              "auto_upper": 35.772892,
              "refseq_lower": 35.207453,
              "refseq_upper": 35.563723
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5200.0,
              "upper": 7000.0,
              "final_lower": 5200.0,
              "final_upper": 7000.0,
              "warn_lower": 5300.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 5265.28,
              "ml_upper": 6955.0,
              "auto_lower": 5265.28,
              "auto_upper": 6432.24,
              "refseq_lower": 5482.01,
              "refseq_upper": 6847.990000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.74,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.7545,
              "refseq_upper": 99.41
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.21,
              "auto_lower": 0.0,
              "auto_upper": 1.4180000000000001,
              "refseq_lower": 0.2,
              "refseq_upper": 2.21
            },
            {
              "metric": "N50",
              "lower": 7000.0,
              "upper": null,
              "final_lower": 7000.0,
              "final_upper": null,
              "warn_lower": 10000.0,
              "warn_upper": 453503.36,
              "source": "computed",
              "ml_lower": 7533.64,
              "ml_upper": 453503.36,
              "auto_lower": 7533.64,
              "auto_upper": 453503.36,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 1220.0,
              "final_lower": null,
              "final_upper": 1220.0,
              "warn_lower": 53.6,
              "warn_upper": 1070.0,
              "source": "computed",
              "ml_lower": 53.6,
              "ml_upper": 1212.6,
              "auto_lower": 53.6,
              "auto_upper": 1212.6000000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 58065.72,
              "warn_upper": 1232275.8,
              "source": "computed",
              "ml_lower": 58065.72,
              "ml_upper": 1232275.8,
              "auto_lower": 58065.72,
              "auto_upper": 1232275.8000000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 145,
            "refseq_count": 59,
            "final_count": 145,
            "filtered_out_count": 0,
            "pass_count": 137,
            "warn_count": 13,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_paralicheniformis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 5000000.0,
              "final_lower": 4200000.0,
              "final_upper": 5000000.0,
              "warn_lower": 4200000.0,
              "warn_upper": 4600000.0,
              "source": "computed",
              "ml_lower": 4261318.79,
              "ml_upper": 4926202.0,
              "auto_lower": 4261318.79,
              "auto_upper": 4542706.23,
              "refseq_lower": 4278110.24,
              "refseq_upper": 4865923.015
            },
            {
              "metric": "GC_Content",
              "lower": 45.5,
              "upper": 46.11,
              "final_lower": 45.5,
              "final_upper": 46.11,
              "warn_lower": 45.58,
              "warn_upper": 45.94,
              "source": "computed",
              "ml_lower": 45.5043,
              "ml_upper": 46.1065,
              "auto_lower": 45.5659355,
              "auto_upper": 45.960456,
              "refseq_lower": 45.5132505,
              "refseq_upper": 46.086161499999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5200.0,
              "final_lower": 4100.0,
              "final_upper": 5200.0,
              "warn_lower": 4200.0,
              "warn_upper": 4700.0,
              "source": "computed",
              "ml_lower": 4198.38,
              "ml_upper": 5194.0,
              "auto_lower": 4198.375,
              "auto_upper": 4703.635,
              "refseq_lower": 4321.095,
              "refseq_upper": 5109.175
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.35,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 95.48845,
              "refseq_upper": 98.78
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.35,
              "auto_lower": 0.0,
              "auto_upper": 0.15090000000000003,
              "refseq_lower": 0.05,
              "refseq_upper": 0.3236000000000001
            },
            {
              "metric": "N50",
              "lower": 130000.0,
              "upper": null,
              "final_lower": 130000.0,
              "final_upper": null,
              "warn_lower": 158000.0,
              "warn_upper": 1099388.38,
              "source": "computed",
              "ml_lower": 130390.73,
              "ml_upper": 1099388.38,
              "auto_lower": 130390.73,
              "auto_upper": 1099388.375,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 19.91,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 19.91,
              "ml_upper": 146.82,
              "auto_lower": 19.91,
              "auto_upper": 146.815,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 332619.8,
              "warn_upper": 1837346.72,
              "source": "computed",
              "ml_lower": 332619.8,
              "ml_upper": 1837346.72,
              "auto_lower": 332619.8,
              "auto_upper": 1837346.7150000005,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 92,
            "refseq_count": 40,
            "final_count": 92,
            "filtered_out_count": 0,
            "pass_count": 94,
            "warn_count": 10,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_paranthracis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5100000.0,
              "upper": 6100000.0,
              "final_lower": 5100000.0,
              "final_upper": 6100000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 5900000.0,
              "source": "computed",
              "ml_lower": 5149464.0,
              "ml_upper": 6055697.0,
              "auto_lower": 5165415.68,
              "auto_upper": 5947090.680000001,
              "refseq_lower": 5153760.6,
              "refseq_upper": 6053890.91
            },
            {
              "metric": "GC_Content",
              "lower": 35.08,
              "upper": 35.6,
              "final_lower": 35.08,
              "final_upper": 35.6,
              "warn_lower": 35.14,
              "warn_upper": 35.45,
              "source": "computed",
              "ml_lower": 35.0888,
              "ml_upper": 35.5962,
              "auto_lower": 35.088844,
              "auto_upper": 35.47855,
              "refseq_lower": 35.2776025,
              "refseq_upper": 35.589732000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5200.0,
              "upper": 6400.0,
              "final_lower": 5200.0,
              "final_upper": 6400.0,
              "warn_lower": 5300.0,
              "warn_upper": 6100.0,
              "source": "computed",
              "ml_lower": 5274.66,
              "ml_upper": 6308.0,
              "auto_lower": 5274.66,
              "auto_upper": 6147.960000000001,
              "refseq_lower": 5319.56,
              "refseq_upper": 6306.845
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.32,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.49324999999999,
              "refseq_upper": 99.41
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.87,
              "auto_lower": 0.0,
              "auto_upper": 1.8672000000000026,
              "refseq_lower": 0.29,
              "refseq_upper": 0.97
            },
            {
              "metric": "N50",
              "lower": 14000.0,
              "upper": null,
              "final_lower": 14000.0,
              "final_upper": null,
              "warn_lower": 19000.0,
              "warn_upper": 486323.42,
              "source": "computed",
              "ml_lower": 14885.14,
              "ml_upper": 486323.42,
              "auto_lower": 14885.14,
              "auto_upper": 486323.4200000015,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 770.0,
              "final_lower": null,
              "final_upper": 770.0,
              "warn_lower": 52.66,
              "warn_upper": 620.0,
              "source": "computed",
              "ml_lower": 52.66,
              "ml_upper": 761.82,
              "auto_lower": 52.66,
              "auto_upper": 761.8200000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 77728.7,
              "warn_upper": 1349223.76,
              "source": "computed",
              "ml_lower": 77728.7,
              "ml_upper": 1349223.76,
              "auto_lower": 77728.7,
              "auto_upper": 1349223.7600000016,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 733,
            "refseq_count": 34,
            "final_count": 733,
            "filtered_out_count": 0,
            "pass_count": 677,
            "warn_count": 65,
            "fail_count": 55
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_pumilus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3500000.0,
              "upper": 4100000.0,
              "final_lower": 3500000.0,
              "final_upper": 4100000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3599976.64,
              "ml_upper": 4059420.0,
              "auto_lower": 3599976.64,
              "auto_upper": 3906434.4,
              "refseq_lower": 3611081.71,
              "refseq_upper": 4038569.81
            },
            {
              "metric": "GC_Content",
              "lower": 41.1,
              "upper": 41.99,
              "final_lower": 41.1,
              "final_upper": 41.99,
              "warn_lower": 41.18,
              "warn_upper": 41.64,
              "source": "computed",
              "ml_lower": 41.1046,
              "ml_upper": 41.981,
              "auto_lower": 41.104632,
              "auto_upper": 41.783635999999994,
              "refseq_lower": 41.18591,
              "refseq_upper": 41.975825
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4300.0,
              "final_lower": 3600.0,
              "final_upper": 4300.0,
              "warn_lower": 3600.0,
              "warn_upper": 3900.0,
              "source": "computed",
              "ml_lower": 3609.92,
              "ml_upper": 4258.0,
              "auto_lower": 3609.92,
              "auto_upper": 4046.72,
              "refseq_lower": 3686.15,
              "refseq_upper": 4235.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.57,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 91.64129999999999,
              "refseq_upper": 97.6816
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.31,
              "auto_lower": 0.0,
              "auto_upper": 0.3475999999999999,
              "refseq_lower": 0.2544,
              "refseq_upper": 5.31
            },
            {
              "metric": "N50",
              "lower": 135000.0,
              "upper": null,
              "final_lower": 135000.0,
              "final_upper": null,
              "warn_lower": 147000.0,
              "warn_upper": 934904.8,
              "source": "computed",
              "ml_lower": 135282.88,
              "ml_upper": 934904.8,
              "auto_lower": 135282.88,
              "auto_upper": 934904.8,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 26.56,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 26.56,
              "ml_upper": 89.2,
              "auto_lower": 26.56,
              "auto_upper": 89.19999999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 319752.68,
              "warn_upper": 994544.44,
              "source": "computed",
              "ml_lower": 319752.68,
              "ml_upper": 994544.44,
              "auto_lower": 319752.68,
              "auto_upper": 994544.4399999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 113,
            "refseq_count": 47,
            "final_count": 113,
            "filtered_out_count": 0,
            "pass_count": 103,
            "warn_count": 18,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Bacillus_safensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4200000.0,
              "final_lower": 3600000.0,
              "final_upper": 4200000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3615194.27,
              "ml_upper": 4151325.0,
              "auto_lower": 3615194.27,
              "auto_upper": 3900033.775,
              "refseq_lower": 3663455.0,
              "refseq_upper": 4115572.7999999993
            },
            {
              "metric": "GC_Content",
              "lower": 41.31,
              "upper": 41.9,
              "final_lower": 41.31,
              "final_upper": 41.9,
              "warn_lower": 41.32,
              "warn_upper": 41.69,
              "source": "computed",
              "ml_lower": 41.3145,
              "ml_upper": 41.8947,
              "auto_lower": 41.31449,
              "auto_upper": 41.691271,
              "refseq_lower": 41.400240000000004,
              "refseq_upper": 41.87034
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4400.0,
              "final_lower": 3600.0,
              "final_upper": 4400.0,
              "warn_lower": 3600.0,
              "warn_upper": 4000.0,
              "source": "computed",
              "ml_lower": 3660.5,
              "ml_upper": 4351.0,
              "auto_lower": 3660.495,
              "auto_upper": 4041.06,
              "refseq_lower": 3767.6,
              "refseq_upper": 4300.599999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.08,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.08,
              "refseq_upper": 99.12
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.59,
              "auto_lower": 0.0,
              "auto_upper": 0.45039999999999963,
              "refseq_lower": 0.29,
              "refseq_upper": 0.59
            },
            {
              "metric": "N50",
              "lower": 175000.0,
              "upper": null,
              "final_lower": 175000.0,
              "final_upper": null,
              "warn_lower": 241000.0,
              "warn_upper": 1895003.26,
              "source": "computed",
              "ml_lower": 175800.14,
              "ml_upper": 1895003.26,
              "auto_lower": 175800.14,
              "auto_upper": 1895003.255,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 17.5,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 17.5,
              "ml_upper": 97.29,
              "auto_lower": 17.495,
              "auto_upper": 97.28999999999974,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 401347.5,
              "warn_upper": 1895003.26,
              "source": "computed",
              "ml_lower": 401347.5,
              "ml_upper": 1895003.26,
              "auto_lower": 401347.495,
              "auto_upper": 1895003.255,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 100,
            "refseq_count": 41,
            "final_count": 100,
            "filtered_out_count": 0,
            "pass_count": 99,
            "warn_count": 6,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_spizizenii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3900000.0,
              "upper": 4300000.0,
              "final_lower": 3900000.0,
              "final_upper": 4300000.0,
              "warn_lower": 3900000.0,
              "warn_upper": 4200000.0,
              "source": "computed",
              "ml_lower": 3952729.0,
              "ml_upper": 4222511.0,
              "auto_lower": 3952729.0,
              "auto_upper": 4175672.8,
              "refseq_lower": 4027939.315,
              "refseq_upper": 4221517.215
            },
            {
              "metric": "GC_Content",
              "lower": 43.49,
              "upper": 43.98,
              "final_lower": 43.49,
              "final_upper": 43.98,
              "warn_lower": 43.6,
              "warn_upper": 43.86,
              "source": "computed",
              "ml_lower": 43.4988,
              "ml_upper": 43.9747,
              "auto_lower": 43.49884,
              "auto_upper": 43.885220000000004,
              "refseq_lower": 43.827868,
              "refseq_upper": 43.974478999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4400.0,
              "final_lower": 3900.0,
              "final_upper": 4400.0,
              "warn_lower": 3900.0,
              "warn_upper": 4300.0,
              "source": "computed",
              "ml_lower": 3942.2,
              "ml_upper": 4301.0,
              "auto_lower": 3942.2,
              "auto_upper": 4216.8,
              "refseq_lower": 4129.065,
              "refseq_upper": 4300.35
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.76,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.92445000000001,
              "refseq_upper": 99.41
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 5.88,
              "auto_lower": 0.006,
              "auto_upper": 0.44800000000000073,
              "refseq_lower": 0.29,
              "refseq_upper": 5.684349999999999
            },
            {
              "metric": "N50",
              "lower": 145000.0,
              "upper": null,
              "final_lower": 145000.0,
              "final_upper": null,
              "warn_lower": 237000.0,
              "warn_upper": 740380.2,
              "source": "computed",
              "ml_lower": 145590.4,
              "ml_upper": 740380.2,
              "auto_lower": 145590.4,
              "auto_upper": 740380.2000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 28.0,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 28.0,
              "ml_upper": 91.2,
              "auto_lower": 28.0,
              "auto_upper": 91.20000000000019,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 386839.2,
              "warn_upper": 1310037.6,
              "source": "computed",
              "ml_lower": 386839.2,
              "ml_upper": 1310037.6,
              "auto_lower": 386839.2,
              "auto_upper": 1310037.6,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 121,
            "refseq_count": 14,
            "final_count": 121,
            "filtered_out_count": 0,
            "pass_count": 116,
            "warn_count": 16,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Bacillus_subtilis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4800000.0,
              "final_lower": 3600000.0,
              "final_upper": 4800000.0,
              "warn_lower": 3800000.0,
              "warn_upper": 4300000.0,
              "source": "computed",
              "ml_lower": 3684279.0,
              "ml_upper": 4703957.0,
              "auto_lower": 3831226.425,
              "auto_upper": 4292397.050000001,
              "refseq_lower": 3855675.445,
              "refseq_upper": 4585243.925000001
            },
            {
              "metric": "GC_Content",
              "lower": 42.87,
              "upper": 44.1,
              "final_lower": 42.87,
              "final_upper": 44.1,
              "warn_lower": 43.23,
              "warn_upper": 43.81,
              "source": "computed",
              "ml_lower": 42.8789,
              "ml_upper": 44.0963,
              "auto_lower": 43.164030000000004,
              "auto_upper": 43.83370000000001,
              "refseq_lower": 43.0185025,
              "refseq_upper": 43.932503
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3800.0,
              "upper": 5000.0,
              "final_lower": 3800.0,
              "final_upper": 5000.0,
              "warn_lower": 3800.0,
              "warn_upper": 4400.0,
              "source": "computed",
              "ml_lower": 3810.0,
              "ml_upper": 4985.0,
              "auto_lower": 3810.0,
              "auto_upper": 4514.275,
              "refseq_lower": 3978.48,
              "refseq_upper": 4876.92
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.64,
              "ml_upper": 100.0,
              "auto_lower": 99.97725,
              "auto_upper": 100.0,
              "refseq_lower": 93.36,
              "refseq_upper": 98.62
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 16.0,
              "final_lower": null,
              "final_upper": 16.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 15.55,
              "auto_lower": 0.0,
              "auto_upper": 1.72,
              "refseq_lower": 0.51,
              "refseq_upper": 11.866300000000026
            },
            {
              "metric": "N50",
              "lower": 49000.0,
              "upper": null,
              "final_lower": 49000.0,
              "final_upper": null,
              "warn_lower": 66000.0,
              "warn_upper": 2232014.62,
              "source": "computed",
              "ml_lower": 49659.95,
              "ml_upper": 2232014.62,
              "auto_lower": 49659.95,
              "auto_upper": 2232014.625,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 18.0,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 18.0,
              "ml_upper": 199.0,
              "auto_lower": 18.0,
              "auto_upper": 199.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 149678.75,
              "warn_upper": 2232014.62,
              "source": "computed",
              "ml_lower": 149678.75,
              "ml_upper": 2232014.62,
              "auto_lower": 149678.75,
              "auto_upper": 2232014.625,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1946,
            "refseq_count": 418,
            "final_count": 1946,
            "filtered_out_count": 0,
            "pass_count": 1745,
            "warn_count": 273,
            "fail_count": 141
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Bacillus_thuringiensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5000000.0,
              "upper": 7000000.0,
              "final_lower": 5000000.0,
              "final_upper": 7000000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6700000.0,
              "source": "computed",
              "ml_lower": 5049730.86,
              "ml_upper": 6919428.96,
              "auto_lower": 5049730.86,
              "auto_upper": 6919428.96,
              "refseq_lower": 5129844.115,
              "refseq_upper": 6865275.07
            },
            {
              "metric": "GC_Content",
              "lower": 34.56,
              "upper": 35.72,
              "final_lower": 34.56,
              "final_upper": 35.72,
              "warn_lower": 34.61,
              "warn_upper": 35.25,
              "source": "computed",
              "ml_lower": 34.5675,
              "ml_upper": 35.7116,
              "auto_lower": 34.567485,
              "auto_upper": 35.398189,
              "refseq_lower": 34.8264635,
              "refseq_upper": 35.608922
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5100.0,
              "upper": 7300.0,
              "final_lower": 5100.0,
              "final_upper": 7300.0,
              "warn_lower": 5400.0,
              "warn_upper": 7100.0,
              "source": "computed",
              "ml_lower": 5157.41,
              "ml_upper": 7245.81,
              "auto_lower": 5157.41,
              "auto_upper": 7245.81,
              "refseq_lower": 5329.865,
              "refseq_upper": 7143.73
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.61,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 92.40025,
              "refseq_upper": 99.58
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.28,
              "auto_lower": 0.0,
              "auto_upper": 2.887600000000002,
              "refseq_lower": 0.21175000000000002,
              "refseq_upper": 3.8003999999999984
            },
            {
              "metric": "N50",
              "lower": 16000.0,
              "upper": null,
              "final_lower": 16000.0,
              "final_upper": null,
              "warn_lower": 26000.0,
              "warn_upper": 602041.47,
              "source": "computed",
              "ml_lower": 16994.09,
              "ml_upper": 602041.47,
              "auto_lower": 16994.09,
              "auto_upper": 602041.4700000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 930.0,
              "final_lower": null,
              "final_upper": 930.0,
              "warn_lower": 51.39,
              "warn_upper": 720.0,
              "source": "computed",
              "ml_lower": 51.39,
              "ml_upper": 923.49,
              "auto_lower": 51.39,
              "auto_upper": 923.4900000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 118886.9,
              "warn_upper": 1458535.71,
              "source": "computed",
              "ml_lower": 118886.9,
              "ml_upper": 1458535.71,
              "auto_lower": 118886.9,
              "auto_upper": 1458535.710000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 479,
            "refseq_count": 110,
            "final_count": 479,
            "filtered_out_count": 0,
            "pass_count": 447,
            "warn_count": 42,
            "fail_count": 34
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_toyonensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5000000.0,
              "upper": 6700000.0,
              "final_lower": 5000000.0,
              "final_upper": 6700000.0,
              "warn_lower": 5500000.0,
              "warn_upper": 6300000.0,
              "source": "computed",
              "ml_lower": 5025419.0,
              "ml_upper": 6694533.0,
              "auto_lower": 5329982.83,
              "auto_upper": 6436404.57,
              "refseq_lower": 5074366.925,
              "refseq_upper": 6667879.95
            },
            {
              "metric": "GC_Content",
              "lower": 34.84,
              "upper": 35.56,
              "final_lower": 34.84,
              "final_upper": 35.56,
              "warn_lower": 34.89,
              "warn_upper": 35.26,
              "source": "computed",
              "ml_lower": 34.8478,
              "ml_upper": 35.5558,
              "auto_lower": 34.8478055,
              "auto_upper": 35.2947235,
              "refseq_lower": 34.9448925,
              "refseq_upper": 35.5337275
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5100.0,
              "upper": 6900.0,
              "final_lower": 5100.0,
              "final_upper": 6900.0,
              "warn_lower": 5500.0,
              "warn_upper": 6500.0,
              "source": "computed",
              "ml_lower": 5194.0,
              "ml_upper": 6848.0,
              "auto_lower": 5452.555,
              "auto_upper": 6541.68,
              "refseq_lower": 5239.9,
              "refseq_upper": 6824.6
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.69,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.80624999999999,
              "refseq_upper": 99.41
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.81,
              "auto_lower": 0.0,
              "auto_upper": 1.81,
              "refseq_lower": 0.1,
              "refseq_upper": 0.28595
            },
            {
              "metric": "N50",
              "lower": 19000.0,
              "upper": null,
              "final_lower": 19000.0,
              "final_upper": null,
              "warn_lower": 26000.0,
              "warn_upper": 580182.74,
              "source": "computed",
              "ml_lower": 19206.7,
              "ml_upper": 580182.74,
              "auto_lower": 19206.7,
              "auto_upper": 580182.74,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 720.0,
              "final_lower": null,
              "final_upper": 720.0,
              "warn_lower": 49.52,
              "warn_upper": 650.0,
              "source": "computed",
              "ml_lower": 49.52,
              "ml_upper": 716.74,
              "auto_lower": 49.515,
              "auto_upper": 716.7449999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 108988.76,
              "warn_upper": 1528888.38,
              "source": "computed",
              "ml_lower": 108988.76,
              "ml_upper": 1528888.38,
              "auto_lower": 108988.765,
              "auto_upper": 1528888.3799999985,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 130,
            "refseq_count": 16,
            "final_count": 130,
            "filtered_out_count": 0,
            "pass_count": 118,
            "warn_count": 15,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_velezensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3700000.0,
              "upper": 4400000.0,
              "final_lower": 3700000.0,
              "final_upper": 4400000.0,
              "warn_lower": 3800000.0,
              "warn_upper": 4300000.0,
              "source": "computed",
              "ml_lower": 3713516.0,
              "ml_upper": 4385679.0,
              "auto_lower": 3828109.835,
              "auto_upper": 4372452.48,
              "refseq_lower": 3850032.25,
              "refseq_upper": 4371975.25
            },
            {
              "metric": "GC_Content",
              "lower": 45.21,
              "upper": 46.98,
              "final_lower": 45.21,
              "final_upper": 46.98,
              "warn_lower": 45.74,
              "warn_upper": 46.62,
              "source": "computed",
              "ml_lower": 45.2107,
              "ml_upper": 46.9792,
              "auto_lower": 45.6398495,
              "auto_upper": 46.652561,
              "refseq_lower": 45.624900000000004,
              "refseq_upper": 46.746975
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4500.0,
              "final_lower": 3600.0,
              "final_upper": 4500.0,
              "warn_lower": 3700.0,
              "warn_upper": 4300.0,
              "source": "computed",
              "ml_lower": 3683.0,
              "ml_upper": 4481.0,
              "auto_lower": 3696.35,
              "auto_upper": 4397.0,
              "refseq_lower": 3805.25,
              "refseq_upper": 4471.25
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.67,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.815,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.76,
              "auto_lower": 0.0,
              "auto_upper": 0.7233000000000004,
              "refseq_lower": 0.01,
              "refseq_upper": 1.5337999999999996
            },
            {
              "metric": "N50",
              "lower": 145000.0,
              "upper": null,
              "final_lower": 145000.0,
              "final_upper": null,
              "warn_lower": 207000.0,
              "warn_upper": 2150254.71,
              "source": "computed",
              "ml_lower": 145225.78,
              "ml_upper": 2150254.71,
              "auto_lower": 145225.78,
              "auto_upper": 2150254.71,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 18.67,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 18.67,
              "ml_upper": 114.99,
              "auto_lower": 18.67,
              "auto_upper": 114.98500000000018,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 324225.44,
              "warn_upper": 2150254.71,
              "source": "computed",
              "ml_lower": 324225.44,
              "ml_upper": 2150254.71,
              "auto_lower": 324225.435,
              "auto_upper": 2150254.71,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 268,
            "refseq_count": 551,
            "final_count": 268,
            "filtered_out_count": 0,
            "pass_count": 249,
            "warn_count": 24,
            "fail_count": 19
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacillus_wiedmannii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 6300000.0,
              "final_lower": 5200000.0,
              "final_upper": 6300000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6100000.0,
              "source": "computed",
              "ml_lower": 5261642.32,
              "ml_upper": 6211130.0,
              "auto_lower": 5261642.32,
              "auto_upper": 6119768.76,
              "refseq_lower": 5394826.37,
              "refseq_upper": 6204808.01
            },
            {
              "metric": "GC_Content",
              "lower": 34.91,
              "upper": 35.47,
              "final_lower": 34.91,
              "final_upper": 35.47,
              "warn_lower": 34.94,
              "warn_upper": 35.35,
              "source": "computed",
              "ml_lower": 34.9122,
              "ml_upper": 35.4669,
              "auto_lower": 34.912172,
              "auto_upper": 35.377057,
              "refseq_lower": 35.109519999999996,
              "refseq_upper": 35.4666
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6500.0,
              "final_lower": 5300.0,
              "final_upper": 6500.0,
              "warn_lower": 5400.0,
              "warn_upper": 6400.0,
              "source": "computed",
              "ml_lower": 5348.86,
              "ml_upper": 6425.07,
              "auto_lower": 5348.86,
              "auto_upper": 6425.07,
              "refseq_lower": 5627.13,
              "refseq_upper": 6316.91
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.82,
              "ml_upper": 100.0,
              "auto_lower": 99.9987,
              "auto_upper": 100.0,
              "refseq_lower": 98.82,
              "refseq_upper": 99.41
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.76,
              "auto_lower": 0.0,
              "auto_upper": 1.0087999999999966,
              "refseq_lower": 0.0321,
              "refseq_upper": 1.7188999999999997
            },
            {
              "metric": "N50",
              "lower": 29000.0,
              "upper": null,
              "final_lower": 29000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 571822.47,
              "source": "computed",
              "ml_lower": 29449.84,
              "ml_upper": 571822.47,
              "auto_lower": 29449.84,
              "auto_upper": 571822.47,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 510.0,
              "final_lower": null,
              "final_upper": 510.0,
              "warn_lower": 46.74,
              "warn_upper": 360.0,
              "source": "computed",
              "ml_lower": 46.74,
              "ml_upper": 500.04,
              "auto_lower": 46.74,
              "auto_upper": 500.0399999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 202298.74,
              "warn_upper": 1474879.27,
              "source": "computed",
              "ml_lower": 202298.74,
              "ml_upper": 1474879.27,
              "auto_lower": 202298.74,
              "auto_upper": 1474879.2699999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 175,
            "refseq_count": 7,
            "final_count": 175,
            "filtered_out_count": 0,
            "pass_count": 152,
            "warn_count": 26,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_caccae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5900000.0,
              "final_lower": 4500000.0,
              "final_upper": 5900000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4570799.0,
              "ml_upper": 5846745.36,
              "auto_lower": 4591572.18,
              "auto_upper": 5846745.359999999,
              "refseq_lower": 4570799.1,
              "refseq_upper": 5487802.375
            },
            {
              "metric": "GC_Content",
              "lower": 41.88,
              "upper": 42.98,
              "final_lower": 41.88,
              "final_upper": 42.98,
              "warn_lower": 42.0,
              "warn_upper": 42.9,
              "source": "computed",
              "ml_lower": 41.8835,
              "ml_upper": 42.9703,
              "auto_lower": 41.883466,
              "auto_upper": 42.970332,
              "refseq_lower": 41.9047075,
              "refseq_upper": 42.825565
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 5100.0,
              "final_lower": 3600.0,
              "final_upper": 5100.0,
              "warn_lower": 3800.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 3683.92,
              "ml_upper": 5092.68,
              "auto_lower": 3683.92,
              "auto_upper": 5092.679999999998,
              "refseq_lower": 3699.05,
              "refseq_upper": 4583.45
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.54,
              "ml_upper": 100.0,
              "auto_lower": 98.0484,
              "auto_upper": 100.0,
              "refseq_lower": 94.58825,
              "refseq_upper": 96.60775
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.11,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.11,
              "ml_upper": 5.19,
              "auto_lower": 0.11,
              "auto_upper": 2.130999999999999,
              "refseq_lower": 0.90275,
              "refseq_upper": 5.085499999999999
            },
            {
              "metric": "N50",
              "lower": 16000.0,
              "upper": null,
              "final_lower": 16000.0,
              "final_upper": null,
              "warn_lower": 82000.0,
              "warn_upper": 611279.88,
              "source": "computed",
              "ml_lower": 16368.04,
              "ml_upper": 611279.88,
              "auto_lower": 16368.039999999999,
              "auto_upper": 611279.879999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 630.0,
              "final_lower": null,
              "final_upper": 630.0,
              "warn_lower": 32.98,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 32.98,
              "ml_upper": 627.22,
              "auto_lower": 32.98,
              "auto_upper": 627.2199999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 66552.08,
              "warn_upper": 1243280.26,
              "source": "computed",
              "ml_lower": 66552.08,
              "ml_upper": 1243280.26,
              "auto_lower": 66552.08,
              "auto_upper": 1243280.2599999988,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 397,
            "refseq_count": 6,
            "final_count": 397,
            "filtered_out_count": 0,
            "pass_count": 353,
            "warn_count": 46,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_cellulosilyticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6500000.0,
              "upper": 7700000.0,
              "final_lower": 6500000.0,
              "final_upper": 7700000.0,
              "warn_lower": 6600000.0,
              "warn_upper": 7600000.0,
              "source": "computed",
              "ml_lower": 6593690.86,
              "ml_upper": 7611019.97,
              "auto_lower": 6593690.86,
              "auto_upper": 7611019.97,
              "refseq_lower": 6835655.84,
              "refseq_upper": 7267348.1
            },
            {
              "metric": "GC_Content",
              "lower": 42.44,
              "upper": 43.28,
              "final_lower": 42.44,
              "final_upper": 43.28,
              "warn_lower": 42.52,
              "warn_upper": 43.25,
              "source": "computed",
              "ml_lower": 42.4427,
              "ml_upper": 43.2754,
              "auto_lower": 42.442726,
              "auto_upper": 43.275388,
              "refseq_lower": 42.696096,
              "refseq_upper": 43.216595999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 6100.0,
              "final_lower": 4900.0,
              "final_upper": 6100.0,
              "warn_lower": 5000.0,
              "warn_upper": 6100.0,
              "source": "computed",
              "ml_lower": 4981.5,
              "ml_upper": 6026.95,
              "auto_lower": 4981.5,
              "auto_upper": 6026.95,
              "refseq_lower": 5003.08,
              "refseq_upper": 5613.38
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.68,
              "ml_upper": 100.0,
              "auto_lower": 99.6808,
              "auto_upper": 100.0,
              "refseq_lower": 100.0,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.35,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.35,
              "ml_upper": 3.14,
              "auto_lower": 0.4204,
              "auto_upper": 3.1385000000000014,
              "refseq_lower": 0.3503,
              "refseq_upper": 0.46909999999999996
            },
            {
              "metric": "N50",
              "lower": 50000.0,
              "upper": null,
              "final_lower": 50000.0,
              "final_upper": null,
              "warn_lower": 56000.0,
              "warn_upper": 678982.44,
              "source": "computed",
              "ml_lower": 50135.15,
              "ml_upper": 678982.44,
              "auto_lower": 50135.15,
              "auto_upper": 678982.4400000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 500.0,
              "final_lower": null,
              "final_upper": 500.0,
              "warn_lower": 36.03,
              "warn_upper": 350.0,
              "source": "computed",
              "ml_lower": 36.03,
              "ml_upper": 496.85,
              "auto_lower": 36.03,
              "auto_upper": 496.85000000000105,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 158699.52,
              "warn_upper": 1631561.22,
              "source": "computed",
              "ml_lower": 158699.52,
              "ml_upper": 1631561.22,
              "auto_lower": 158699.52,
              "auto_upper": 1631561.22,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 203,
            "refseq_count": 5,
            "final_count": 203,
            "filtered_out_count": 0,
            "pass_count": 182,
            "warn_count": 21,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_fragilis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4800000.0,
              "upper": 5800000.0,
              "final_lower": 4800000.0,
              "final_upper": 5800000.0,
              "warn_lower": 4800000.0,
              "warn_upper": 5600000.0,
              "source": "computed",
              "ml_lower": 4865230.86,
              "ml_upper": 5734009.0,
              "auto_lower": 4865230.86,
              "auto_upper": 5659723.399999999,
              "refseq_lower": 4907445.575,
              "refseq_upper": 5711555.625
            },
            {
              "metric": "GC_Content",
              "lower": 43.05,
              "upper": 43.85,
              "final_lower": 43.05,
              "final_upper": 43.85,
              "warn_lower": 43.13,
              "warn_upper": 43.77,
              "source": "computed",
              "ml_lower": 43.0502,
              "ml_upper": 43.8456,
              "auto_lower": 43.050192,
              "auto_upper": 43.812204,
              "refseq_lower": 43.114217499999995,
              "refseq_upper": 43.8210475
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 5100.0,
              "final_lower": 3900.0,
              "final_upper": 5100.0,
              "warn_lower": 4000.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 3961.0,
              "ml_upper": 5011.7,
              "auto_lower": 3997.44,
              "auto_upper": 5011.7,
              "refseq_lower": 3975.525,
              "refseq_upper": 4915.125
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.73,
              "ml_upper": 100.0,
              "auto_lower": 99.6584,
              "auto_upper": 100.0,
              "refseq_lower": 96.01,
              "refseq_upper": 99.39
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.08,
              "warn_upper": 4.0,
              "source": "computed",
              "ml_lower": 0.08,
              "ml_upper": 5.98,
              "auto_lower": 0.0846,
              "auto_upper": 5.9823999999999975,
              "refseq_lower": 0.11,
              "refseq_upper": 1.9147500000000013
            },
            {
              "metric": "N50",
              "lower": 23000.0,
              "upper": null,
              "final_lower": 23000.0,
              "final_upper": null,
              "warn_lower": 38000.0,
              "warn_upper": 921128.48,
              "source": "computed",
              "ml_lower": 23570.34,
              "ml_upper": 921128.48,
              "auto_lower": 23570.34,
              "auto_upper": 921128.48,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 490.0,
              "final_lower": null,
              "final_upper": 490.0,
              "warn_lower": 26.46,
              "warn_upper": 330.0,
              "source": "computed",
              "ml_lower": 26.46,
              "ml_upper": 487.32,
              "auto_lower": 26.46,
              "auto_upper": 487.3199999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 96517.92,
              "warn_upper": 1977046.14,
              "source": "computed",
              "ml_lower": 96517.92,
              "ml_upper": 1977046.14,
              "auto_lower": 96517.92,
              "auto_upper": 1977046.139999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1293,
            "refseq_count": 36,
            "final_count": 1293,
            "filtered_out_count": 0,
            "pass_count": 1174,
            "warn_count": 110,
            "fail_count": 93
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_ovatus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6200000.0,
              "upper": 7700000.0,
              "final_lower": 6200000.0,
              "final_upper": 7700000.0,
              "warn_lower": 6300000.0,
              "warn_upper": 7700000.0,
              "source": "computed",
              "ml_lower": 6214252.02,
              "ml_upper": 7689550.5,
              "auto_lower": 6214252.02,
              "auto_upper": 7689550.495,
              "refseq_lower": 6472390.825,
              "refseq_upper": 7229048.285
            },
            {
              "metric": "GC_Content",
              "lower": 41.49,
              "upper": 42.45,
              "final_lower": 41.49,
              "final_upper": 42.45,
              "warn_lower": 41.52,
              "warn_upper": 42.29,
              "source": "computed",
              "ml_lower": 41.4918,
              "ml_upper": 42.4413,
              "auto_lower": 41.4918295,
              "auto_upper": 42.441339500000005,
              "refseq_lower": 41.619820499999996,
              "refseq_upper": 42.257725
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4700.0,
              "upper": 6400.0,
              "final_lower": 4700.0,
              "final_upper": 6400.0,
              "warn_lower": 4800.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 4753.77,
              "ml_upper": 6335.02,
              "auto_lower": 4753.775,
              "auto_upper": 6335.015,
              "refseq_lower": 4925.0,
              "refseq_upper": 5907.34
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.77,
              "ml_upper": 100.0,
              "auto_lower": 99.63865,
              "auto_upper": 100.0,
              "refseq_lower": 92.83695,
              "refseq_upper": 99.5196
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.18,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.18,
              "ml_upper": 3.78,
              "auto_lower": 0.27985000000000004,
              "auto_upper": 3.783899999999996,
              "refseq_lower": 0.19169999999999998,
              "refseq_upper": 3.057
            },
            {
              "metric": "N50",
              "lower": 46000.0,
              "upper": null,
              "final_lower": 46000.0,
              "final_upper": null,
              "warn_lower": 78000.0,
              "warn_upper": 487837.38,
              "source": "computed",
              "ml_lower": 46646.58,
              "ml_upper": 487837.38,
              "auto_lower": 46646.575,
              "auto_upper": 487837.38,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 430.0,
              "final_lower": null,
              "final_upper": 430.0,
              "warn_lower": 60.0,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 60.0,
              "ml_upper": 428.15,
              "auto_lower": 60.0,
              "auto_upper": 428.14999999999986,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 177476.14,
              "warn_upper": 1068996.21,
              "source": "computed",
              "ml_lower": 177476.14,
              "ml_upper": 1068996.21,
              "auto_lower": 177476.135,
              "auto_upper": 1068996.2099999997,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 598,
            "refseq_count": 14,
            "final_count": 598,
            "filtered_out_count": 0,
            "pass_count": 528,
            "warn_count": 59,
            "fail_count": 44
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_stercoris": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3400000.0,
              "upper": 4800000.0,
              "final_lower": 3400000.0,
              "final_upper": 4800000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 4400000.0,
              "source": "computed",
              "ml_lower": 3474255.69,
              "ml_upper": 4734765.0,
              "auto_lower": 3474255.69,
              "auto_upper": 4477804.159999999,
              "refseq_lower": 3885067.05,
              "refseq_upper": 4727496.66
            },
            {
              "metric": "GC_Content",
              "lower": 45.53,
              "upper": 46.41,
              "final_lower": 45.53,
              "final_upper": 46.41,
              "warn_lower": 45.62,
              "warn_upper": 46.31,
              "source": "computed",
              "ml_lower": 45.5382,
              "ml_upper": 46.4007,
              "auto_lower": 45.538248,
              "auto_upper": 46.400718,
              "refseq_lower": 45.727099,
              "refseq_upper": 45.855007
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2900.0,
              "upper": 4100.0,
              "final_lower": 2900.0,
              "final_upper": 4100.0,
              "warn_lower": 3000.0,
              "warn_upper": 4000.0,
              "source": "computed",
              "ml_lower": 2909.29,
              "ml_upper": 4096.0,
              "auto_lower": 2909.29,
              "auto_upper": 4064.43,
              "refseq_lower": 3256.41,
              "refseq_upper": 4089.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 95.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 92.09,
              "ml_upper": 99.99,
              "auto_lower": 93.402,
              "auto_upper": 99.99,
              "refseq_lower": 92.1268,
              "refseq_upper": 97.9282
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.09,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.09,
              "ml_upper": 9.66,
              "auto_lower": 0.09240000000000001,
              "auto_upper": 3.2670999999999975,
              "refseq_lower": 1.7962,
              "refseq_upper": 9.6172
            },
            {
              "metric": "N50",
              "lower": 24000.0,
              "upper": null,
              "final_lower": 24000.0,
              "final_upper": null,
              "warn_lower": 30000.0,
              "warn_upper": 447311.09,
              "source": "computed",
              "ml_lower": 24125.73,
              "ml_upper": 447311.09,
              "auto_lower": 24125.73,
              "auto_upper": 447311.08999999985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 360.0,
              "final_lower": null,
              "final_upper": 360.0,
              "warn_lower": 45.91,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 45.91,
              "ml_upper": 352.57,
              "auto_lower": 45.910000000000004,
              "auto_upper": 352.56999999999977,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 93068.37,
              "warn_upper": 813460.62,
              "source": "computed",
              "ml_lower": 93068.37,
              "ml_upper": 813460.62,
              "auto_lower": 93068.37,
              "auto_upper": 813460.62,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 163,
            "refseq_count": 3,
            "final_count": 163,
            "filtered_out_count": 0,
            "pass_count": 138,
            "warn_count": 27,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_thetaiotaomicron": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5800000.0,
              "upper": 7200000.0,
              "final_lower": 5800000.0,
              "final_upper": 7200000.0,
              "warn_lower": 5900000.0,
              "warn_upper": 7100000.0,
              "source": "computed",
              "ml_lower": 5830764.0,
              "ml_upper": 7105646.68,
              "auto_lower": 5897055.225,
              "auto_upper": 7105646.675,
              "refseq_lower": 5842758.51,
              "refseq_upper": 6896733.875
            },
            {
              "metric": "GC_Content",
              "lower": 42.5,
              "upper": 43.33,
              "final_lower": 42.5,
              "final_upper": 43.33,
              "warn_lower": 42.62,
              "warn_upper": 43.22,
              "source": "computed",
              "ml_lower": 42.5059,
              "ml_upper": 43.3218,
              "auto_lower": 42.505927500000006,
              "auto_upper": 43.321815,
              "refseq_lower": 42.579204000000004,
              "refseq_upper": 43.169703000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 6100.0,
              "final_lower": 4400.0,
              "final_upper": 6100.0,
              "warn_lower": 4600.0,
              "warn_upper": 6000.0,
              "source": "computed",
              "ml_lower": 4420.0,
              "ml_upper": 6081.13,
              "auto_lower": 4601.4,
              "auto_upper": 6081.125000000002,
              "refseq_lower": 4436.815,
              "refseq_upper": 5529.905
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.44,
              "ml_upper": 100.0,
              "auto_lower": 99.05675,
              "auto_upper": 100.0,
              "refseq_lower": 90.6908,
              "refseq_upper": 98.12429999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.14,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.14,
              "ml_upper": 3.97,
              "auto_lower": 0.14,
              "auto_upper": 3.9650000000000047,
              "refseq_lower": 0.41,
              "refseq_upper": 1.88765
            },
            {
              "metric": "N50",
              "lower": 28000.0,
              "upper": null,
              "final_lower": 28000.0,
              "final_upper": null,
              "warn_lower": 64000.0,
              "warn_upper": 629856.1,
              "source": "computed",
              "ml_lower": 28640.42,
              "ml_upper": 629856.1,
              "auto_lower": 28640.425,
              "auto_upper": 629856.1000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 500.0,
              "final_lower": null,
              "final_upper": 500.0,
              "warn_lower": 45.0,
              "warn_upper": 300.0,
              "source": "computed",
              "ml_lower": 45.0,
              "ml_upper": 494.85,
              "auto_lower": 45.0,
              "auto_upper": 494.85000000000105,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 100008.55,
              "warn_upper": 1310534.53,
              "source": "computed",
              "ml_lower": 100008.55,
              "ml_upper": 1310534.53,
              "auto_lower": 100008.55,
              "auto_upper": 1310534.5250000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 706,
            "refseq_count": 20,
            "final_count": 706,
            "filtered_out_count": 0,
            "pass_count": 634,
            "warn_count": 61,
            "fail_count": 82
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_uniformis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 5500000.0,
              "final_lower": 4200000.0,
              "final_upper": 5500000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 5300000.0,
              "source": "computed",
              "ml_lower": 4269551.16,
              "ml_upper": 5471617.0,
              "auto_lower": 4269551.16,
              "auto_upper": 5386805.479999999,
              "refseq_lower": 4289600.65,
              "refseq_upper": 5464988.399999999
            },
            {
              "metric": "GC_Content",
              "lower": 45.96,
              "upper": 46.79,
              "final_lower": 45.96,
              "final_upper": 46.79,
              "warn_lower": 46.06,
              "warn_upper": 46.71,
              "source": "computed",
              "ml_lower": 45.963,
              "ml_upper": 46.7816,
              "auto_lower": 45.963035999999995,
              "auto_upper": 46.7816,
              "refseq_lower": 46.205625,
              "refseq_upper": 46.620295
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4900.0,
              "final_lower": 3400.0,
              "final_upper": 4900.0,
              "warn_lower": 3600.0,
              "warn_upper": 4700.0,
              "source": "computed",
              "ml_lower": 3454.0,
              "ml_upper": 4809.08,
              "auto_lower": 3514.24,
              "auto_upper": 4809.079999999998,
              "refseq_lower": 3460.55,
              "refseq_upper": 4737.85
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.84,
              "ml_upper": 100.0,
              "auto_lower": 99.6948,
              "auto_upper": 100.0,
              "refseq_lower": 91.85000000000001,
              "refseq_upper": 98.3725
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.07,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 8.92,
              "auto_lower": 0.07,
              "auto_upper": 4.964399999999985,
              "refseq_lower": 0.5,
              "refseq_upper": 8.873999999999999
            },
            {
              "metric": "N50",
              "lower": 23000.0,
              "upper": null,
              "final_lower": 23000.0,
              "final_upper": null,
              "warn_lower": 50000.0,
              "warn_upper": 593322.12,
              "source": "computed",
              "ml_lower": 23695.88,
              "ml_upper": 593322.12,
              "auto_lower": 23695.88,
              "auto_upper": 593322.1199999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 470.0,
              "final_lower": null,
              "final_upper": 470.0,
              "warn_lower": 29.0,
              "warn_upper": 330.0,
              "source": "computed",
              "ml_lower": 29.0,
              "ml_upper": 463.64,
              "auto_lower": 29.0,
              "auto_upper": 463.63999999999965,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 87700.88,
              "warn_upper": 1295966.08,
              "source": "computed",
              "ml_lower": 87700.88,
              "ml_upper": 1295966.08,
              "auto_lower": 87700.88,
              "auto_upper": 1295966.08,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1225,
            "refseq_count": 11,
            "final_count": 1225,
            "filtered_out_count": 0,
            "pass_count": 1091,
            "warn_count": 138,
            "fail_count": 89
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bacteroides_xylanisolvens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5600000.0,
              "upper": 7000000.0,
              "final_lower": 5600000.0,
              "final_upper": 7000000.0,
              "warn_lower": 5600000.0,
              "warn_upper": 6900000.0,
              "source": "computed",
              "ml_lower": 5682867.12,
              "ml_upper": 6943858.57,
              "auto_lower": 5682867.12,
              "auto_upper": 6943858.57,
              "refseq_lower": 5876093.85,
              "refseq_upper": 6824862.63
            },
            {
              "metric": "GC_Content",
              "lower": 41.5,
              "upper": 42.69,
              "final_lower": 41.5,
              "final_upper": 42.69,
              "warn_lower": 41.61,
              "warn_upper": 42.57,
              "source": "computed",
              "ml_lower": 41.5071,
              "ml_upper": 42.689,
              "auto_lower": 41.507085,
              "auto_upper": 42.689045,
              "refseq_lower": 41.819194,
              "refseq_upper": 42.237660500000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 6000.0,
              "final_lower": 4400.0,
              "final_upper": 6000.0,
              "warn_lower": 4400.0,
              "warn_upper": 5800.0,
              "source": "computed",
              "ml_lower": 4420.44,
              "ml_upper": 5991.03,
              "auto_lower": 4420.44,
              "auto_upper": 5991.03,
              "refseq_lower": 4586.405,
              "refseq_upper": 5545.415
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.34,
              "ml_upper": 100.0,
              "auto_lower": 99.4015,
              "auto_upper": 100.0,
              "refseq_lower": 94.4768,
              "refseq_upper": 98.85785
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.08,
              "warn_upper": 4.0,
              "source": "computed",
              "ml_lower": 0.08,
              "ml_upper": 8.27,
              "auto_lower": 0.0786,
              "auto_upper": 4.607499999999998,
              "refseq_lower": 0.81255,
              "refseq_upper": 8.22365
            },
            {
              "metric": "N50",
              "lower": 16000.0,
              "upper": null,
              "final_lower": 16000.0,
              "final_upper": null,
              "warn_lower": 19000.0,
              "warn_upper": 219158.62,
              "source": "computed",
              "ml_lower": 16145.43,
              "ml_upper": 219158.62,
              "auto_lower": 16145.43,
              "auto_upper": 219158.61999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 980.0,
              "final_lower": null,
              "final_upper": 980.0,
              "warn_lower": 87.86,
              "warn_upper": 790.0,
              "source": "computed",
              "ml_lower": 87.86,
              "ml_upper": 975.21,
              "auto_lower": 87.86,
              "auto_upper": 975.21,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 82706.37,
              "warn_upper": 734259.74,
              "source": "computed",
              "ml_lower": 82706.37,
              "ml_upper": 734259.74,
              "auto_lower": 82706.37,
              "auto_upper": 734259.74,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 387,
            "refseq_count": 10,
            "final_count": 387,
            "filtered_out_count": 0,
            "pass_count": 353,
            "warn_count": 31,
            "fail_count": 31
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bartonella_krasnovii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2300000.0,
              "final_lower": 2000000.0,
              "final_upper": 2300000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 2047560.0,
              "ml_upper": 2204146.5,
              "auto_lower": 2113790.5,
              "auto_upper": 2204146.5,
              "refseq_lower": 2048684.89,
              "refseq_upper": 2186463.83
            },
            {
              "metric": "GC_Content",
              "lower": 37.86,
              "upper": 38.24,
              "final_lower": 37.86,
              "final_upper": 38.24,
              "warn_lower": 38.08,
              "warn_upper": 38.14,
              "source": "computed",
              "ml_lower": 37.8612,
              "ml_upper": 38.2307,
              "auto_lower": 38.025400000000005,
              "auto_upper": 38.1493,
              "refseq_lower": 37.862460999999996,
              "refseq_upper": 38.230661
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2100.0,
              "final_lower": 1600.0,
              "final_upper": 2100.0,
              "warn_lower": 1900.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1686.0,
              "ml_upper": 2014.0,
              "auto_lower": 1849.0,
              "auto_upper": 2014.0,
              "refseq_lower": 1686.195,
              "refseq_upper": 1863.61
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.1,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.4627,
              "refseq_upper": 99.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.13,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 1.58,
              "auto_lower": 0.18,
              "auto_upper": 1.58,
              "refseq_lower": 0.13,
              "refseq_upper": 0.13
            },
            {
              "metric": "N50",
              "lower": 60000.0,
              "upper": null,
              "final_lower": 60000.0,
              "final_upper": null,
              "warn_lower": 64000.0,
              "warn_upper": 150794.5,
              "source": "computed",
              "ml_lower": 60570.5,
              "ml_upper": 150794.5,
              "auto_lower": 60570.5,
              "auto_upper": 150794.5,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 290.0,
              "final_lower": null,
              "final_upper": 290.0,
              "warn_lower": 120.5,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 120.5,
              "ml_upper": 283.0,
              "auto_lower": 120.5,
              "auto_upper": 283.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 214251.0,
              "warn_upper": 392277.5,
              "source": "computed",
              "ml_lower": 214251.0,
              "ml_upper": 392277.5,
              "auto_lower": 214251.0,
              "auto_upper": 392277.5,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 301,
            "refseq_count": 14,
            "final_count": 301,
            "filtered_out_count": 0,
            "pass_count": 277,
            "warn_count": 30,
            "fail_count": 30
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bifidobacterium_adolescentis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2500000.0,
              "final_lower": 2000000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2015787.0,
              "ml_upper": 2436461.08,
              "auto_lower": 2055395.58,
              "auto_upper": 2436461.08,
              "refseq_lower": 2019249.75,
              "refseq_upper": 2399208.65
            },
            {
              "metric": "GC_Content",
              "lower": 58.86,
              "upper": 60.11,
              "final_lower": 58.86,
              "final_upper": 60.11,
              "warn_lower": 59.06,
              "warn_upper": 59.94,
              "source": "computed",
              "ml_lower": 58.8608,
              "ml_upper": 60.1096,
              "auto_lower": 58.860794,
              "auto_upper": 60.109592,
              "refseq_lower": 59.027375,
              "refseq_upper": 59.8424575
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2200.0,
              "final_lower": 1600.0,
              "final_upper": 2200.0,
              "warn_lower": 1600.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1623.54,
              "ml_upper": 2124.0,
              "auto_lower": 1623.54,
              "auto_upper": 2072.0,
              "refseq_lower": 1683.0,
              "refseq_upper": 2113.4249999999997
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.26,
              "ml_upper": 100.0,
              "auto_lower": 99.92,
              "auto_upper": 100.0,
              "refseq_lower": 92.50075000000001,
              "refseq_upper": 99.84
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 6.02,
              "auto_lower": 0.02,
              "auto_upper": 0.95,
              "refseq_lower": 0.519,
              "refseq_upper": 5.9232499999999995
            },
            {
              "metric": "N50",
              "lower": 65000.0,
              "upper": null,
              "final_lower": 65000.0,
              "final_upper": null,
              "warn_lower": 96000.0,
              "warn_upper": 1335685.86,
              "source": "computed",
              "ml_lower": 65511.18,
              "ml_upper": 1335685.86,
              "auto_lower": 65511.18,
              "auto_upper": 1335685.8600000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 80.0,
              "final_lower": null,
              "final_upper": 80.0,
              "warn_lower": 11.0,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 11.0,
              "ml_upper": 75.46,
              "auto_lower": 11.0,
              "auto_upper": 75.46000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 200332.1,
              "warn_upper": 1335685.86,
              "source": "computed",
              "ml_lower": 200332.1,
              "ml_upper": 1335685.86,
              "auto_lower": 200332.1,
              "auto_upper": 1335685.8600000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1909,
            "refseq_count": 46,
            "final_count": 1909,
            "filtered_out_count": 0,
            "pass_count": 1833,
            "warn_count": 124,
            "fail_count": 114
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bifidobacterium_animalis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2100000.0,
              "final_lower": 1900000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1915366.2,
              "ml_upper": 2027369.0,
              "auto_lower": 1915366.2,
              "auto_upper": 1925679.5,
              "refseq_lower": 1931229.5,
              "refseq_upper": 2008075.4000000001
            },
            {
              "metric": "GC_Content",
              "lower": 60.21,
              "upper": 60.65,
              "final_lower": 60.21,
              "final_upper": 60.65,
              "warn_lower": 60.45,
              "warn_upper": 60.49,
              "source": "computed",
              "ml_lower": 60.2133,
              "ml_upper": 60.6437,
              "auto_lower": 60.429317499999996,
              "auto_upper": 60.4937775,
              "refseq_lower": 60.29163,
              "refseq_upper": 60.6398
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1500.0,
              "upper": 1700.0,
              "final_lower": 1500.0,
              "final_upper": 1700.0,
              "warn_lower": 1500.0,
              "warn_upper": 1600.0,
              "source": "computed",
              "ml_lower": 1559.82,
              "ml_upper": 1684.0,
              "auto_lower": 1559.825,
              "auto_upper": 1576.35,
              "refseq_lower": 1596.3,
              "refseq_upper": 1673.5
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.9,
              "source": "computed",
              "ml_lower": 94.8,
              "ml_upper": 99.9,
              "auto_lower": 99.75825,
              "auto_upper": 99.9,
              "refseq_lower": 94.896,
              "refseq_upper": 98.97
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.14,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.14,
              "ml_upper": 3.15,
              "auto_lower": 0.14,
              "auto_upper": 0.2417500000000001,
              "refseq_lower": 0.27,
              "refseq_upper": 2.6220000000000048
            },
            {
              "metric": "N50",
              "lower": 62000.0,
              "upper": null,
              "final_lower": 62000.0,
              "final_upper": null,
              "warn_lower": 105000.0,
              "warn_upper": 1022904.18,
              "source": "computed",
              "ml_lower": 62542.52,
              "ml_upper": 1022904.18,
              "auto_lower": 62542.525,
              "auto_upper": 1022904.175,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 50.0,
              "final_lower": null,
              "final_upper": 50.0,
              "warn_lower": 12.82,
              "warn_upper": 40.0,
              "source": "computed",
              "ml_lower": 12.82,
              "ml_upper": 49.58,
              "auto_lower": 12.825,
              "auto_upper": 49.5750000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 173559.02,
              "warn_upper": 1022904.18,
              "source": "computed",
              "ml_lower": 173559.02,
              "ml_upper": 1022904.18,
              "auto_lower": 173559.025,
              "auto_upper": 1022904.175,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 366,
            "refseq_count": 61,
            "final_count": 366,
            "filtered_out_count": 0,
            "pass_count": 351,
            "warn_count": 13,
            "fail_count": 34
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Bifidobacterium_bifidum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2600000.0,
              "final_lower": 2100000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2123327.31,
              "ml_upper": 2503841.0,
              "auto_lower": 2123327.305,
              "auto_upper": 2452480.204999999,
              "refseq_lower": 2152810.2,
              "refseq_upper": 2487478.0
            },
            {
              "metric": "GC_Content",
              "lower": 62.4,
              "upper": 62.9,
              "final_lower": 62.4,
              "final_upper": 62.9,
              "warn_lower": 62.51,
              "warn_upper": 62.87,
              "source": "computed",
              "ml_lower": 62.4082,
              "ml_upper": 62.8958,
              "auto_lower": 62.4082455,
              "auto_upper": 62.895845,
              "refseq_lower": 62.53166,
              "refseq_upper": 62.80148
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2300.0,
              "final_lower": 1700.0,
              "final_upper": 2300.0,
              "warn_lower": 1700.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1707.58,
              "ml_upper": 2215.0,
              "auto_lower": 1707.58,
              "auto_upper": 2088.934999999999,
              "refseq_lower": 1793.6,
              "refseq_upper": 2198.7
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 92.03,
              "ml_upper": 99.99,
              "auto_lower": 99.77145,
              "auto_upper": 99.99,
              "refseq_lower": 92.266,
              "refseq_upper": 97.25
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.11,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.11,
              "ml_upper": 4.32,
              "auto_lower": 0.11,
              "auto_upper": 0.3956499999999997,
              "refseq_lower": 0.24,
              "refseq_upper": 4.077999999999997
            },
            {
              "metric": "N50",
              "lower": 66000.0,
              "upper": null,
              "final_lower": 66000.0,
              "final_upper": null,
              "warn_lower": 85000.0,
              "warn_upper": 604522.76,
              "source": "computed",
              "ml_lower": 66462.28,
              "ml_upper": 604522.76,
              "auto_lower": 66462.285,
              "auto_upper": 604522.765,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 70.0,
              "final_lower": null,
              "final_upper": 70.0,
              "warn_lower": 7.0,
              "warn_upper": 60.0,
              "source": "computed",
              "ml_lower": 7.0,
              "ml_upper": 66.71,
              "auto_lower": 7.0,
              "auto_upper": 66.70999999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 167855.74,
              "warn_upper": 898847.0,
              "source": "computed",
              "ml_lower": 167855.74,
              "ml_upper": 898847.0,
              "auto_lower": 167855.735,
              "auto_upper": 898847.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 230,
            "refseq_count": 21,
            "final_count": 230,
            "filtered_out_count": 0,
            "pass_count": 212,
            "warn_count": 23,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Bifidobacterium_breve": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 2600000.0,
              "final_lower": 2200000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2600000.0,
              "source": "computed",
              "ml_lower": 2201029.24,
              "ml_upper": 2589602.0,
              "auto_lower": 2201029.24,
              "auto_upper": 2567900.91,
              "refseq_lower": 2252905.51,
              "refseq_upper": 2574080.91
            },
            {
              "metric": "GC_Content",
              "lower": 58.52,
              "upper": 59.38,
              "final_lower": 58.52,
              "final_upper": 59.38,
              "warn_lower": 58.57,
              "warn_upper": 59.0,
              "source": "computed",
              "ml_lower": 58.5259,
              "ml_upper": 59.3758,
              "auto_lower": 58.533170500000004,
              "auto_upper": 59.041239,
              "refseq_lower": 58.531497,
              "refseq_upper": 59.351614
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2400.0,
              "final_lower": 1800.0,
              "final_upper": 2400.0,
              "warn_lower": 1800.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1841.89,
              "ml_upper": 2373.14,
              "auto_lower": 1841.89,
              "auto_upper": 2373.135,
              "refseq_lower": 1945.32,
              "refseq_upper": 2367.65
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 94.77,
              "ml_upper": 99.99,
              "auto_lower": 99.12724999999999,
              "auto_upper": 99.99,
              "refseq_lower": 95.00489999999999,
              "refseq_upper": 99.61
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 13.0,
              "final_lower": null,
              "final_upper": 13.0,
              "warn_lower": 0.01,
              "warn_upper": 11.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 12.52,
              "auto_lower": 0.01,
              "auto_upper": 12.521650000000013,
              "refseq_lower": 0.17609999999999998,
              "refseq_upper": 4.0037
            },
            {
              "metric": "N50",
              "lower": 11000.0,
              "upper": null,
              "final_lower": 11000.0,
              "final_upper": null,
              "warn_lower": 15000.0,
              "warn_upper": 653201.76,
              "source": "computed",
              "ml_lower": 11861.74,
              "ml_upper": 653201.76,
              "auto_lower": 11861.74,
              "auto_upper": 653201.765,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 410.0,
              "final_lower": null,
              "final_upper": 410.0,
              "warn_lower": 7.0,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 7.0,
              "ml_upper": 403.06,
              "auto_lower": 7.0,
              "auto_upper": 403.055,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 46725.58,
              "warn_upper": 998054.69,
              "source": "computed",
              "ml_lower": 46725.58,
              "ml_upper": 998054.69,
              "auto_lower": 46725.58,
              "auto_upper": 998054.6850000005,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 190,
            "refseq_count": 59,
            "final_count": 190,
            "filtered_out_count": 0,
            "pass_count": 175,
            "warn_count": 16,
            "fail_count": 24
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "frac_high_contamination",
                  "flag": "error",
                  "fraction": 0.1316,
                  "count": 25,
                  "n": 190,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Bifidobacterium_dentium": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 2800000.0,
              "final_lower": 2400000.0,
              "final_upper": 2800000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2800000.0,
              "source": "computed",
              "ml_lower": 2415656.9,
              "ml_upper": 2758140.0,
              "auto_lower": 2415656.9,
              "auto_upper": 2709220.805,
              "refseq_lower": 2536579.875,
              "refseq_upper": 2757490.35
            },
            {
              "metric": "GC_Content",
              "lower": 58.16,
              "upper": 58.88,
              "final_lower": 58.16,
              "final_upper": 58.88,
              "warn_lower": 58.19,
              "warn_upper": 58.7,
              "source": "computed",
              "ml_lower": 58.1655,
              "ml_upper": 58.8791,
              "auto_lower": 58.165544499999996,
              "auto_upper": 58.733960499999995,
              "refseq_lower": 58.299285,
              "refseq_upper": 58.860155
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2500.0,
              "final_lower": 1900.0,
              "final_upper": 2500.0,
              "warn_lower": 2000.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1937.24,
              "ml_upper": 2403.0,
              "auto_lower": 1937.24,
              "auto_upper": 2304.935,
              "refseq_lower": 2109.45,
              "refseq_upper": 2400.225
            },
            {
              "metric": "Completeness_Specific",
              "lower": 88.0,
              "upper": null,
              "final_lower": 88.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 88.19,
              "ml_upper": 99.99,
              "auto_lower": 99.83,
              "auto_upper": 99.99,
              "refseq_lower": 88.22075,
              "refseq_upper": 96.91
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.14,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.14,
              "ml_upper": 5.58,
              "auto_lower": 0.15,
              "auto_upper": 1.71,
              "refseq_lower": 0.14,
              "refseq_upper": 5.5335
            },
            {
              "metric": "N50",
              "lower": 101000.0,
              "upper": null,
              "final_lower": 101000.0,
              "final_upper": null,
              "warn_lower": 110000.0,
              "warn_upper": 436649.16,
              "source": "computed",
              "ml_lower": 101656.38,
              "ml_upper": 436649.16,
              "auto_lower": 101656.385,
              "auto_upper": 436649.1599999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 60.0,
              "final_lower": null,
              "final_upper": 60.0,
              "warn_lower": 11.27,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 11.27,
              "ml_upper": 51.36,
              "auto_lower": 11.27,
              "auto_upper": 51.364999999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 211246.89,
              "warn_upper": 772404.78,
              "source": "computed",
              "ml_lower": 211246.89,
              "ml_upper": 772404.78,
              "auto_lower": 211246.89,
              "auto_upper": 772404.7849999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 128,
            "refseq_count": 16,
            "final_count": 128,
            "filtered_out_count": 0,
            "pass_count": 118,
            "warn_count": 25,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bifidobacterium_longum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 2900000.0,
              "final_lower": 2200000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2600000.0,
              "source": "computed",
              "ml_lower": 2206926.28,
              "ml_upper": 2832850.0,
              "auto_lower": 2206926.275,
              "auto_upper": 2683191.55,
              "refseq_lower": 2250184.5,
              "refseq_upper": 2832792.37
            },
            {
              "metric": "GC_Content",
              "lower": 59.13,
              "upper": 60.42,
              "final_lower": 59.13,
              "final_upper": 60.42,
              "warn_lower": 59.65,
              "warn_upper": 60.32,
              "source": "computed",
              "ml_lower": 59.1311,
              "ml_upper": 60.4123,
              "auto_lower": 59.5360925,
              "auto_upper": 60.4123075,
              "refseq_lower": 59.178786,
              "refseq_upper": 60.3819085
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2700.0,
              "final_lower": 1700.0,
              "final_upper": 2700.0,
              "warn_lower": 1800.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1797.0,
              "ml_upper": 2672.0,
              "auto_lower": 1797.0,
              "auto_upper": 2361.5749999999994,
              "refseq_lower": 1893.13,
              "refseq_upper": 2671.435
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 93.46,
              "ml_upper": 99.99,
              "auto_lower": 99.7055,
              "auto_upper": 99.99,
              "refseq_lower": 94.8838,
              "refseq_upper": 99.85
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.58,
              "auto_lower": 0.0,
              "auto_upper": 1.2112499999999955,
              "refseq_lower": 0.16,
              "refseq_upper": 2.4175999999999993
            },
            {
              "metric": "N50",
              "lower": 55000.0,
              "upper": null,
              "final_lower": 55000.0,
              "final_upper": null,
              "warn_lower": 67000.0,
              "warn_upper": 448763.0,
              "source": "computed",
              "ml_lower": 55516.3,
              "ml_upper": 448763.0,
              "auto_lower": 55516.3,
              "auto_upper": 448763.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 17.0,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 17.0,
              "ml_upper": 143.9,
              "auto_lower": 17.0,
              "auto_upper": 143.89999999999964,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 122953.0,
              "warn_upper": 949227.12,
              "source": "computed",
              "ml_lower": 122953.0,
              "ml_upper": 949227.12,
              "auto_lower": 122953.0,
              "auto_upper": 949227.125,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1756,
            "refseq_count": 114,
            "final_count": 1756,
            "filtered_out_count": 0,
            "pass_count": 1603,
            "warn_count": 173,
            "fail_count": 113
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bifidobacterium_pseudocatenulatum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2600000.0,
              "final_lower": 2100000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2104196.65,
              "ml_upper": 2556908.0,
              "auto_lower": 2104196.65,
              "auto_upper": 2478286.96,
              "refseq_lower": 2192450.2,
              "refseq_upper": 2545610.32
            },
            {
              "metric": "GC_Content",
              "lower": 56.1,
              "upper": 56.89,
              "final_lower": 56.1,
              "final_upper": 56.89,
              "warn_lower": 56.17,
              "warn_upper": 56.78,
              "source": "computed",
              "ml_lower": 56.1033,
              "ml_upper": 56.8836,
              "auto_lower": 56.103288,
              "auto_upper": 56.883626,
              "refseq_lower": 56.325131999999996,
              "refseq_upper": 56.821032
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2300.0,
              "final_lower": 1600.0,
              "final_upper": 2300.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1697.0,
              "ml_upper": 2238.0,
              "auto_lower": 1697.0,
              "auto_upper": 2107.63,
              "refseq_lower": 1801.72,
              "refseq_upper": 2224.32
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.55,
              "ml_upper": 100.0,
              "auto_lower": 99.9079,
              "auto_upper": 100.0,
              "refseq_lower": 93.89959999999999,
              "refseq_upper": 98.82
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.16,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.16,
              "ml_upper": 1.63,
              "auto_lower": 0.28,
              "auto_upper": 1.4373000000000047,
              "refseq_lower": 0.16,
              "refseq_upper": 1.5565000000000007
            },
            {
              "metric": "N50",
              "lower": 58000.0,
              "upper": null,
              "final_lower": 58000.0,
              "final_upper": null,
              "warn_lower": 89000.0,
              "warn_upper": 1504678.69,
              "source": "computed",
              "ml_lower": 58668.73,
              "ml_upper": 1504678.69,
              "auto_lower": 58668.73,
              "auto_upper": 1504678.6900000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 12.0,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 12.0,
              "ml_upper": 85.42,
              "auto_lower": 12.0,
              "auto_upper": 85.42000000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 160281.97,
              "warn_upper": 1504678.69,
              "source": "computed",
              "ml_lower": 160281.97,
              "ml_upper": 1504678.69,
              "auto_lower": 160281.97,
              "auto_upper": 1504678.6900000004,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 559,
            "refseq_count": 17,
            "final_count": 559,
            "filtered_out_count": 0,
            "pass_count": 515,
            "warn_count": 53,
            "fail_count": 42
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bordetella_pertussis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3700000.0,
              "upper": 4400000.0,
              "final_lower": 3700000.0,
              "final_upper": 4400000.0,
              "warn_lower": 3800000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3780197.02,
              "ml_upper": 4386396.0,
              "auto_lower": 3780197.025,
              "auto_upper": 3907948.525000001,
              "refseq_lower": 4082556.22,
              "refseq_upper": 4279075.744999999
            },
            {
              "metric": "GC_Content",
              "lower": 67.61,
              "upper": 67.93,
              "final_lower": 67.61,
              "final_upper": 67.93,
              "warn_lower": 67.72,
              "warn_upper": 67.9,
              "source": "computed",
              "ml_lower": 67.6134,
              "ml_upper": 67.927,
              "auto_lower": 67.61335,
              "auto_upper": 67.92698999999999,
              "refseq_lower": 67.688074,
              "refseq_upper": 67.75359350000001
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4300.0,
              "final_lower": 3600.0,
              "final_upper": 4300.0,
              "warn_lower": 3600.0,
              "warn_upper": 4000.0,
              "source": "computed",
              "ml_lower": 3662.0,
              "ml_upper": 4249.0,
              "auto_lower": 3662.0,
              "auto_upper": 4008.4500000000007,
              "refseq_lower": 3922.435,
              "refseq_upper": 4122.344999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.98,
              "source": "computed",
              "ml_lower": 91.86,
              "ml_upper": 99.98,
              "auto_lower": 96.12825000000001,
              "auto_upper": 99.98,
              "refseq_lower": 93.8596,
              "refseq_upper": 98.35
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.31,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.31,
              "ml_upper": 7.67,
              "auto_lower": 0.67,
              "auto_upper": 1.57,
              "refseq_lower": 0.33,
              "refseq_upper": 4.055649999999999
            },
            {
              "metric": "N50",
              "lower": 12000.0,
              "upper": null,
              "final_lower": 12000.0,
              "final_upper": null,
              "warn_lower": 15000.0,
              "warn_upper": 23245.0,
              "source": "computed",
              "ml_lower": 12188.9,
              "ml_upper": 23245.0,
              "auto_lower": 12188.9,
              "auto_upper": 23245.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 530.0,
              "final_lower": null,
              "final_upper": 530.0,
              "warn_lower": 269.0,
              "warn_upper": 410.0,
              "source": "computed",
              "ml_lower": 269.0,
              "ml_upper": 524.73,
              "auto_lower": 269.0,
              "auto_upper": 524.7250000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 47055.68,
              "warn_upper": 76384.73,
              "source": "computed",
              "ml_lower": 47055.68,
              "ml_upper": 76384.73,
              "auto_lower": 47055.674999999996,
              "auto_upper": 76384.725,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 6456,
            "refseq_count": 688,
            "final_count": 6456,
            "filtered_out_count": 0,
            "pass_count": 6012,
            "warn_count": 367,
            "fail_count": 1147
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [
              "The CheckM reference database does not separate Bordetella species cleanly. Completeness and Contamination scores for B. pertussis here may be unreliable \u2014 interpret with caution and confirm species identification with an alternative tool before trusting QC flags."
            ],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Borreliella_afzelii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 900000.0,
              "upper": 1500000.0,
              "final_lower": 900000.0,
              "final_upper": 1500000.0,
              "warn_lower": 1200000.0,
              "warn_upper": 1500000.0,
              "source": "computed",
              "ml_lower": 918834.0,
              "ml_upper": 1440562.6,
              "auto_lower": 1228694.295,
              "auto_upper": 1440562.595,
              "refseq_lower": 920210.36,
              "refseq_upper": 1402383.8
            },
            {
              "metric": "GC_Content",
              "lower": 27.59,
              "upper": 28.3,
              "final_lower": 27.59,
              "final_upper": 28.3,
              "warn_lower": 27.66,
              "warn_upper": 28.13,
              "source": "computed",
              "ml_lower": 27.5965,
              "ml_upper": 28.2922,
              "auto_lower": 27.596525500000002,
              "auto_upper": 28.1469925,
              "refseq_lower": 27.902728000000003,
              "refseq_upper": 28.28999
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 800.0,
              "upper": 1700.0,
              "final_lower": 800.0,
              "final_upper": 1700.0,
              "warn_lower": 1300.0,
              "warn_upper": 1700.0,
              "source": "computed",
              "ml_lower": 866.0,
              "ml_upper": 1674.3,
              "auto_lower": 1224.14,
              "auto_upper": 1674.305,
              "refseq_lower": 867.66,
              "refseq_upper": 1443.26
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 96.0,
              "warn_upper": 99.52,
              "source": "computed",
              "ml_lower": 95.58,
              "ml_upper": 99.52,
              "auto_lower": 95.58085,
              "auto_upper": 99.4944,
              "refseq_lower": 98.9704,
              "refseq_upper": 99.5176
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.09,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.09,
              "ml_upper": 1.95,
              "auto_lower": 0.28035,
              "auto_upper": 1.9513500000000004,
              "refseq_lower": 0.09,
              "refseq_upper": 0.2566
            },
            {
              "metric": "N50",
              "lower": 15000.0,
              "upper": null,
              "final_lower": 15000.0,
              "final_upper": null,
              "warn_lower": 19000.0,
              "warn_upper": 436252.19,
              "source": "computed",
              "ml_lower": 15515.3,
              "ml_upper": 436252.19,
              "auto_lower": 15515.3,
              "auto_upper": 436252.19,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 430.0,
              "final_lower": null,
              "final_upper": 430.0,
              "warn_lower": 113.68,
              "warn_upper": 410.0,
              "source": "computed",
              "ml_lower": 113.68,
              "ml_upper": 422.92,
              "auto_lower": 113.68,
              "auto_upper": 422.915,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 49971.73,
              "warn_upper": 515994.51,
              "source": "computed",
              "ml_lower": 49971.73,
              "ml_upper": 515994.51,
              "auto_lower": 49971.73,
              "auto_upper": 515994.50500000117,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 140,
            "refseq_count": 5,
            "final_count": 140,
            "filtered_out_count": 0,
            "pass_count": 128,
            "warn_count": 16,
            "fail_count": 7
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Borreliella_burgdorferi": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 900000.0,
              "upper": 1600000.0,
              "final_lower": 900000.0,
              "final_upper": 1600000.0,
              "warn_lower": 1100000.0,
              "warn_upper": 1500000.0,
              "source": "computed",
              "ml_lower": 906733.0,
              "ml_upper": 1540680.21,
              "auto_lower": 1088946.59,
              "auto_upper": 1540680.2050000005,
              "refseq_lower": 907873.855,
              "refseq_upper": 1528274.345
            },
            {
              "metric": "GC_Content",
              "lower": 27.93,
              "upper": 31.06,
              "final_lower": 27.93,
              "final_upper": 31.06,
              "warn_lower": 27.96,
              "warn_upper": 30.08,
              "source": "computed",
              "ml_lower": 27.933,
              "ml_upper": 31.0516,
              "auto_lower": 27.932965,
              "auto_upper": 31.051614,
              "refseq_lower": 28.010577,
              "refseq_upper": 28.61437
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 800.0,
              "upper": 1900.0,
              "final_lower": 800.0,
              "final_upper": 1900.0,
              "warn_lower": 1200.0,
              "warn_upper": 1800.0,
              "source": "computed",
              "ml_lower": 855.0,
              "ml_upper": 1804.14,
              "auto_lower": 1104.325,
              "auto_upper": 1804.140000000003,
              "refseq_lower": 855.855,
              "refseq_upper": 1581.585
            },
            {
              "metric": "Completeness_Specific",
              "lower": 88.0,
              "upper": null,
              "final_lower": 88.0,
              "final_upper": null,
              "warn_lower": 93.0,
              "warn_upper": 99.87,
              "source": "computed",
              "ml_lower": 88.72,
              "ml_upper": 99.87,
              "auto_lower": 88.71645000000001,
              "auto_upper": 99.25355,
              "refseq_lower": 97.8198,
              "refseq_upper": 99.87
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.14,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.14,
              "ml_upper": 8.33,
              "auto_lower": 0.14,
              "auto_upper": 1.9771500000000104,
              "refseq_lower": 2.78,
              "refseq_upper": 8.33
            },
            {
              "metric": "N50",
              "lower": 3000.0,
              "upper": null,
              "final_lower": 3000.0,
              "final_upper": null,
              "warn_lower": 6000.0,
              "warn_upper": 909750.39,
              "source": "computed",
              "ml_lower": 3825.04,
              "ml_upper": 909750.39,
              "auto_lower": 3825.035,
              "auto_upper": 909750.39,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 750.0,
              "final_lower": null,
              "final_upper": 750.0,
              "warn_lower": 75.66,
              "warn_upper": 590.0,
              "source": "computed",
              "ml_lower": 75.66,
              "ml_upper": 744.36,
              "auto_lower": 75.66,
              "auto_upper": 744.3550000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 23810.56,
              "warn_upper": 909750.39,
              "source": "computed",
              "ml_lower": 23810.56,
              "ml_upper": 909750.39,
              "auto_lower": 23810.565,
              "auto_upper": 909750.39,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 534,
            "refseq_count": 58,
            "final_count": 534,
            "filtered_out_count": 0,
            "pass_count": 498,
            "warn_count": 47,
            "fail_count": 67
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "frac_incomplete",
                  "flag": "warn",
                  "fraction": 0.0487,
                  "count": 26,
                  "n": 534,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Borreliella_garinii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 900000.0,
              "upper": 1500000.0,
              "final_lower": 900000.0,
              "final_upper": 1500000.0,
              "warn_lower": 1100000.0,
              "warn_upper": 1500000.0,
              "source": "computed",
              "ml_lower": 902487.0,
              "ml_upper": 1462438.82,
              "auto_lower": 1082343.86,
              "auto_upper": 1462438.82,
              "refseq_lower": 902497.57,
              "refseq_upper": 1229072.615
            },
            {
              "metric": "GC_Content",
              "lower": 27.57,
              "upper": 28.56,
              "final_lower": 27.57,
              "final_upper": 28.56,
              "warn_lower": 27.59,
              "warn_upper": 28.26,
              "source": "computed",
              "ml_lower": 27.5778,
              "ml_upper": 28.5525,
              "auto_lower": 27.5777995,
              "auto_upper": 28.552535999999996,
              "refseq_lower": 28.009619999999998,
              "refseq_upper": 28.386881
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 800.0,
              "upper": 1800.0,
              "final_lower": 800.0,
              "final_upper": 1800.0,
              "warn_lower": 1000.0,
              "warn_upper": 1700.0,
              "source": "computed",
              "ml_lower": 854.0,
              "ml_upper": 1730.37,
              "auto_lower": 1027.895,
              "auto_upper": 1730.3699999999997,
              "refseq_lower": 854.035,
              "refseq_upper": 1210.65
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 94.0,
              "warn_upper": 99.56,
              "source": "computed",
              "ml_lower": 93.42,
              "ml_upper": 99.56,
              "auto_lower": 93.42360000000001,
              "auto_upper": 99.46069999999999,
              "refseq_lower": 98.77120000000001,
              "refseq_upper": 99.55825
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.71,
              "auto_lower": 0.3197,
              "auto_upper": 2.710749999999999,
              "refseq_lower": 0.03085,
              "refseq_upper": 0.19915000000000002
            },
            {
              "metric": "N50",
              "lower": 12000.0,
              "upper": null,
              "final_lower": 12000.0,
              "final_upper": null,
              "warn_lower": 25000.0,
              "warn_upper": 692791.48,
              "source": "computed",
              "ml_lower": 12341.45,
              "ml_upper": 692791.48,
              "auto_lower": 12341.45,
              "auto_upper": 692791.485,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 450.0,
              "final_lower": null,
              "final_upper": 450.0,
              "warn_lower": 22.0,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 22.0,
              "ml_upper": 445.4,
              "auto_lower": 21.995,
              "auto_upper": 445.40499999999963,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 44912.78,
              "warn_upper": 692791.48,
              "source": "computed",
              "ml_lower": 44912.78,
              "ml_upper": 692791.48,
              "auto_lower": 44912.785,
              "auto_upper": 692791.485,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 200,
            "refseq_count": 8,
            "final_count": 200,
            "filtered_out_count": 0,
            "pass_count": 180,
            "warn_count": 19,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "frac_incomplete",
                  "flag": "error",
                  "fraction": 0.075,
                  "count": 15,
                  "n": 200,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Brachyspira_hyodysenteriae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2900000.0,
              "upper": 3300000.0,
              "final_lower": 2900000.0,
              "final_upper": 3300000.0,
              "warn_lower": 3000000.0,
              "warn_upper": 3200000.0,
              "source": "computed",
              "ml_lower": 2988879.33,
              "ml_upper": 3277544.0,
              "auto_lower": 2988879.33,
              "auto_upper": 3166779.6,
              "refseq_lower": 3023162.5,
              "refseq_upper": 3264077.26
            },
            {
              "metric": "GC_Content",
              "lower": 26.98,
              "upper": 27.41,
              "final_lower": 26.98,
              "final_upper": 27.41,
              "warn_lower": 26.99,
              "warn_upper": 27.25,
              "source": "computed",
              "ml_lower": 26.982,
              "ml_upper": 27.4012,
              "auto_lower": 26.984506,
              "auto_upper": 27.401243,
              "refseq_lower": 26.982077,
              "refseq_upper": 27.102953000000003
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2500.0,
              "upper": 3000.0,
              "final_lower": 2500.0,
              "final_upper": 3000.0,
              "warn_lower": 2500.0,
              "warn_upper": 3000.0,
              "source": "computed",
              "ml_lower": 2595.46,
              "ml_upper": 2987.0,
              "auto_lower": 2595.46,
              "auto_upper": 2960.59,
              "refseq_lower": 2635.14,
              "refseq_upper": 2967.47
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.89,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.9166,
              "refseq_upper": 97.902
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.31,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.31,
              "ml_upper": 1.45,
              "auto_lower": 0.36,
              "auto_upper": 0.9135000000000005,
              "refseq_lower": 0.3149,
              "refseq_upper": 1.4458
            },
            {
              "metric": "N50",
              "lower": 11000.0,
              "upper": null,
              "final_lower": 11000.0,
              "final_upper": null,
              "warn_lower": 15000.0,
              "warn_upper": 558084.81,
              "source": "computed",
              "ml_lower": 11271.46,
              "ml_upper": 558084.81,
              "auto_lower": 11271.46,
              "auto_upper": 558084.81,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 460.0,
              "final_lower": null,
              "final_upper": 460.0,
              "warn_lower": 27.46,
              "warn_upper": 390.0,
              "source": "computed",
              "ml_lower": 27.46,
              "ml_upper": 454.32,
              "auto_lower": 27.46,
              "auto_upper": 454.32000000000016,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 47344.13,
              "warn_upper": 1223654.67,
              "source": "computed",
              "ml_lower": 47344.13,
              "ml_upper": 1223654.67,
              "auto_lower": 47344.13,
              "auto_upper": 1223654.6700000013,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 147,
            "refseq_count": 15,
            "final_count": 147,
            "filtered_out_count": 0,
            "pass_count": 143,
            "warn_count": 11,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Bradyrhizobium_diazoefficiens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 7100000.0,
              "upper": 9800000.0,
              "final_lower": 7100000.0,
              "final_upper": 9800000.0,
              "warn_lower": 7100000.0,
              "warn_upper": 9300000.0,
              "source": "computed",
              "ml_lower": 7134258.54,
              "ml_upper": 9796986.0,
              "auto_lower": 7134258.54,
              "auto_upper": 9371680.01,
              "refseq_lower": 7908141.575,
              "refseq_upper": 9704649.625
            },
            {
              "metric": "GC_Content",
              "lower": 63.36,
              "upper": 64.17,
              "final_lower": 63.36,
              "final_upper": 64.17,
              "warn_lower": 63.88,
              "warn_upper": 64.15,
              "source": "computed",
              "ml_lower": 63.3646,
              "ml_upper": 64.1601,
              "auto_lower": 63.8684,
              "auto_upper": 64.160134,
              "refseq_lower": 63.571197500000004,
              "refseq_upper": 64.119415
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6600.0,
              "upper": 9400.0,
              "final_lower": 6600.0,
              "final_upper": 9400.0,
              "warn_lower": 6600.0,
              "warn_upper": 8800.0,
              "source": "computed",
              "ml_lower": 6634.0,
              "ml_upper": 9305.0,
              "auto_lower": 6634.0,
              "auto_upper": 8833.6,
              "refseq_lower": 7475.675,
              "refseq_upper": 9215.3
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.54,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.5745,
              "refseq_upper": 99.99
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.04,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 1.34,
              "auto_lower": 0.08,
              "auto_upper": 0.7204000000000002,
              "refseq_lower": 0.1882,
              "refseq_upper": 1.2544999999999988
            },
            {
              "metric": "N50",
              "lower": 55000.0,
              "upper": null,
              "final_lower": 55000.0,
              "final_upper": null,
              "warn_lower": 73000.0,
              "warn_upper": 524908.17,
              "source": "computed",
              "ml_lower": 55670.64,
              "ml_upper": 524908.17,
              "auto_lower": 55670.64,
              "auto_upper": 524908.17,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 370.0,
              "final_lower": null,
              "final_upper": 370.0,
              "warn_lower": 77.0,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 77.0,
              "ml_upper": 360.14,
              "auto_lower": 77.0,
              "auto_upper": 360.14,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 185639.04,
              "warn_upper": 1743347.87,
              "source": "computed",
              "ml_lower": 185639.04,
              "ml_upper": 1743347.87,
              "auto_lower": 185639.04,
              "auto_upper": 1743347.87,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 123,
            "refseq_count": 116,
            "final_count": 123,
            "filtered_out_count": 0,
            "pass_count": 111,
            "warn_count": 12,
            "fail_count": 21
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Brucella_melitensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3200000.0,
              "upper": 3400000.0,
              "final_lower": 3200000.0,
              "final_upper": 3400000.0,
              "warn_lower": 3200000.0,
              "warn_upper": 3400000.0,
              "source": "computed",
              "ml_lower": 3245859.6,
              "ml_upper": 3317103.0,
              "auto_lower": 3245859.6,
              "auto_upper": 3308696.33,
              "refseq_lower": 3274830.54,
              "refseq_upper": 3316382.14
            },
            {
              "metric": "GC_Content",
              "lower": 57.21,
              "upper": 57.29,
              "final_lower": 57.21,
              "final_upper": 57.29,
              "warn_lower": 57.22,
              "warn_upper": 57.28,
              "source": "computed",
              "ml_lower": 57.2132,
              "ml_upper": 57.2837,
              "auto_lower": 57.213236,
              "auto_upper": 57.2837,
              "refseq_lower": 57.213352,
              "refseq_upper": 57.247893999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3000.0,
              "upper": 3300.0,
              "final_lower": 3000.0,
              "final_upper": 3300.0,
              "warn_lower": 3000.0,
              "warn_upper": 3200.0,
              "source": "computed",
              "ml_lower": 3068.0,
              "ml_upper": 3252.0,
              "auto_lower": 3068.0,
              "auto_upper": 3169.985,
              "refseq_lower": 3212.14,
              "refseq_upper": 3252.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.6,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.9078,
              "refseq_upper": 98.56
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.06,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 0.89,
              "auto_lower": 0.06,
              "auto_upper": 0.66,
              "refseq_lower": 0.34,
              "refseq_upper": 0.8444000000000006
            },
            {
              "metric": "N50",
              "lower": 83000.0,
              "upper": null,
              "final_lower": 83000.0,
              "final_upper": null,
              "warn_lower": 122000.0,
              "warn_upper": 531416.0,
              "source": "computed",
              "ml_lower": 83581.2,
              "ml_upper": 531416.0,
              "auto_lower": 83581.195,
              "auto_upper": 531416.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 80.0,
              "final_lower": null,
              "final_upper": 80.0,
              "warn_lower": 21.0,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 21.0,
              "ml_upper": 79.0,
              "auto_lower": 21.0,
              "auto_upper": 79.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 230908.08,
              "warn_upper": 1101508.13,
              "source": "computed",
              "ml_lower": 230908.08,
              "ml_upper": 1101508.13,
              "auto_lower": 230908.085,
              "auto_upper": 1101508.1300000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2804,
            "refseq_count": 77,
            "final_count": 2804,
            "filtered_out_count": 0,
            "pass_count": 2737,
            "warn_count": 135,
            "fail_count": 166
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_cenocepacia": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6600000.0,
              "upper": 8800000.0,
              "final_lower": 6600000.0,
              "final_upper": 8800000.0,
              "warn_lower": 7400000.0,
              "warn_upper": 8400000.0,
              "source": "computed",
              "ml_lower": 6654975.55,
              "ml_upper": 8731481.0,
              "auto_lower": 6654975.55,
              "auto_upper": 8696069.68,
              "refseq_lower": 7104685.4,
              "refseq_upper": 8676171.44
            },
            {
              "metric": "GC_Content",
              "lower": 66.38,
              "upper": 67.55,
              "final_lower": 66.38,
              "final_upper": 67.55,
              "warn_lower": 66.62,
              "warn_upper": 67.49,
              "source": "computed",
              "ml_lower": 66.3876,
              "ml_upper": 67.5417,
              "auto_lower": 66.387591,
              "auto_upper": 67.54168800000001,
              "refseq_lower": 66.553008,
              "refseq_upper": 67.3831
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6100.0,
              "upper": 8200.0,
              "final_lower": 6100.0,
              "final_upper": 8200.0,
              "warn_lower": 6600.0,
              "warn_upper": 7800.0,
              "source": "computed",
              "ml_lower": 6102.39,
              "ml_upper": 8115.0,
              "auto_lower": 6102.39,
              "auto_upper": 8005.785,
              "refseq_lower": 6512.12,
              "refseq_upper": 8065.08
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.44,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 92.5252,
              "refseq_upper": 99.3064
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.88,
              "auto_lower": 0.0,
              "auto_upper": 2.3618999999999994,
              "refseq_lower": 0.6796,
              "refseq_upper": 4.773199999999999
            },
            {
              "metric": "N50",
              "lower": 23000.0,
              "upper": null,
              "final_lower": 23000.0,
              "final_upper": null,
              "warn_lower": 33000.0,
              "warn_upper": 405057.0,
              "source": "computed",
              "ml_lower": 23141.74,
              "ml_upper": 405057.0,
              "auto_lower": 23141.74,
              "auto_upper": 405057.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 730.0,
              "final_lower": null,
              "final_upper": 730.0,
              "warn_lower": 71.62,
              "warn_upper": 550.0,
              "source": "computed",
              "ml_lower": 71.62,
              "ml_upper": 726.19,
              "auto_lower": 71.62,
              "auto_upper": 726.1899999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 94233.9,
              "warn_upper": 1069487.88,
              "source": "computed",
              "ml_lower": 94233.9,
              "ml_upper": 1069487.88,
              "auto_lower": 94233.905,
              "auto_upper": 1069487.88,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 482,
            "refseq_count": 25,
            "final_count": 482,
            "filtered_out_count": 0,
            "pass_count": 438,
            "warn_count": 50,
            "fail_count": 38
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_cepacia": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6400000.0,
              "upper": 9500000.0,
              "final_lower": 6400000.0,
              "final_upper": 9500000.0,
              "warn_lower": 7300000.0,
              "warn_upper": 9400000.0,
              "source": "computed",
              "ml_lower": 6467321.0,
              "ml_upper": 9452125.95,
              "auto_lower": 7095302.07,
              "auto_upper": 9452125.95,
              "refseq_lower": 6576078.625,
              "refseq_upper": 8943021.25
            },
            {
              "metric": "GC_Content",
              "lower": 65.86,
              "upper": 67.03,
              "final_lower": 65.86,
              "final_upper": 67.03,
              "warn_lower": 65.91,
              "warn_upper": 66.96,
              "source": "computed",
              "ml_lower": 65.8623,
              "ml_upper": 67.0285,
              "auto_lower": 65.862349,
              "auto_upper": 67.028533,
              "refseq_lower": 66.38876250000001,
              "refseq_upper": 66.8985
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5900.0,
              "upper": 8800.0,
              "final_lower": 5900.0,
              "final_upper": 8800.0,
              "warn_lower": 6600.0,
              "warn_upper": 8700.0,
              "source": "computed",
              "ml_lower": 5979.0,
              "ml_upper": 8770.19,
              "auto_lower": 6433.89,
              "auto_upper": 8770.19,
              "refseq_lower": 6063.0,
              "refseq_upper": 8183.875
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.42,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 94.7125,
              "refseq_upper": 99.97
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.35,
              "auto_lower": 0.0,
              "auto_upper": 1.9772999999999998,
              "refseq_lower": 0.6900000000000001,
              "refseq_upper": 4.2225
            },
            {
              "metric": "N50",
              "lower": 78000.0,
              "upper": null,
              "final_lower": 78000.0,
              "final_upper": null,
              "warn_lower": 94000.0,
              "warn_upper": 664593.86,
              "source": "computed",
              "ml_lower": 78993.84,
              "ml_upper": 664593.86,
              "auto_lower": 78993.84,
              "auto_upper": 664593.86,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 350.0,
              "final_lower": null,
              "final_upper": 350.0,
              "warn_lower": 51.08,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 51.08,
              "ml_upper": 347.62,
              "auto_lower": 51.08,
              "auto_upper": 347.61999999999904,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 253743.81,
              "warn_upper": 1616765.07,
              "source": "computed",
              "ml_lower": 253743.81,
              "ml_upper": 1616765.07,
              "auto_lower": 253743.81,
              "auto_upper": 1616765.07,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 255,
            "refseq_count": 26,
            "final_count": 255,
            "filtered_out_count": 0,
            "pass_count": 220,
            "warn_count": 48,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_contaminans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 7000000.0,
              "upper": 9900000.0,
              "final_lower": 7000000.0,
              "final_upper": 9900000.0,
              "warn_lower": 7300000.0,
              "warn_upper": 9400000.0,
              "source": "computed",
              "ml_lower": 7026270.0,
              "ml_upper": 9832642.07,
              "auto_lower": 7053374.78,
              "auto_upper": 9832642.069999998,
              "refseq_lower": 7090835.49,
              "refseq_upper": 9419683.69
            },
            {
              "metric": "GC_Content",
              "lower": 65.75,
              "upper": 72.02,
              "final_lower": 65.75,
              "final_upper": 72.02,
              "warn_lower": 65.79,
              "warn_upper": 69.97,
              "source": "computed",
              "ml_lower": 65.7592,
              "ml_upper": 72.0124,
              "auto_lower": 65.759207,
              "auto_upper": 72.012416,
              "refseq_lower": 65.811145,
              "refseq_upper": 66.82830100000001
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6300.0,
              "upper": 9100.0,
              "final_lower": 6300.0,
              "final_upper": 9100.0,
              "warn_lower": 6600.0,
              "warn_upper": 8700.0,
              "source": "computed",
              "ml_lower": 6377.03,
              "ml_upper": 9028.39,
              "auto_lower": 6377.03,
              "auto_upper": 9028.389999999998,
              "refseq_lower": 6502.98,
              "refseq_upper": 8709.07
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.76,
              "ml_upper": 100.0,
              "auto_lower": 99.9389,
              "auto_upper": 100.0,
              "refseq_lower": 93.7842,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.62,
              "auto_lower": 0.0,
              "auto_upper": 2.623499999999997,
              "refseq_lower": 0.09,
              "refseq_upper": 0.56
            },
            {
              "metric": "N50",
              "lower": 27000.0,
              "upper": null,
              "final_lower": 27000.0,
              "final_upper": null,
              "warn_lower": 34000.0,
              "warn_upper": 634732.2,
              "source": "computed",
              "ml_lower": 27782.91,
              "ml_upper": 634732.2,
              "auto_lower": 27782.91,
              "auto_upper": 634732.1999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 630.0,
              "final_lower": null,
              "final_upper": 630.0,
              "warn_lower": 50.87,
              "warn_upper": 520.0,
              "source": "computed",
              "ml_lower": 50.87,
              "ml_upper": 628.19,
              "auto_lower": 50.87,
              "auto_upper": 628.1899999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 109629.02,
              "warn_upper": 1780049.38,
              "source": "computed",
              "ml_lower": 109629.02,
              "ml_upper": 1780049.38,
              "auto_lower": 109629.02,
              "auto_upper": 1780049.3799999973,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 199,
            "refseq_count": 23,
            "final_count": 199,
            "filtered_out_count": 0,
            "pass_count": 184,
            "warn_count": 12,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_dolosa": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6100000.0,
              "upper": 6600000.0,
              "final_lower": 6100000.0,
              "final_upper": 6600000.0,
              "warn_lower": 6200000.0,
              "warn_upper": 6400000.0,
              "source": "computed",
              "ml_lower": 6195642.0,
              "ml_upper": 6506221.0,
              "auto_lower": 6258785.78,
              "auto_upper": 6360157.58,
              "refseq_lower": 6200978.325,
              "refseq_upper": 6503851.875
            },
            {
              "metric": "GC_Content",
              "lower": 66.93,
              "upper": 67.12,
              "final_lower": 66.93,
              "final_upper": 67.12,
              "warn_lower": 67.02,
              "warn_upper": 67.12,
              "source": "computed",
              "ml_lower": 66.9313,
              "ml_upper": 67.1125,
              "auto_lower": 67.00557,
              "auto_upper": 67.11250199999999,
              "refseq_lower": 66.932925,
              "refseq_upper": 67.0080975
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5500.0,
              "upper": 6100.0,
              "final_lower": 5500.0,
              "final_upper": 6100.0,
              "warn_lower": 5500.0,
              "warn_upper": 6100.0,
              "source": "computed",
              "ml_lower": 5563.98,
              "ml_upper": 6073.08,
              "auto_lower": 5563.98,
              "auto_upper": 6073.08,
              "refseq_lower": 5647.175,
              "refseq_upper": 5882.2
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 100.0,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.14,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.14,
              "ml_upper": 2.11,
              "auto_lower": 0.48,
              "auto_upper": 2.1102,
              "refseq_lower": 0.14,
              "refseq_upper": 0.14
            },
            {
              "metric": "N50",
              "lower": 19000.0,
              "upper": null,
              "final_lower": 19000.0,
              "final_upper": null,
              "warn_lower": 23000.0,
              "warn_upper": 225676.0,
              "source": "computed",
              "ml_lower": 19400.04,
              "ml_upper": 225676.0,
              "auto_lower": 19400.04,
              "auto_upper": 225676.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 700.0,
              "final_lower": null,
              "final_upper": 700.0,
              "warn_lower": 76.96,
              "warn_upper": 610.0,
              "source": "computed",
              "ml_lower": 76.96,
              "ml_upper": 698.54,
              "auto_lower": 76.96,
              "auto_upper": 698.5399999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90383.74,
              "warn_upper": 581183.0,
              "source": "computed",
              "ml_lower": 90383.74,
              "ml_upper": 581183.0,
              "auto_lower": 90383.74,
              "auto_upper": 581183.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 797,
            "refseq_count": 6,
            "final_count": 797,
            "filtered_out_count": 0,
            "pass_count": 771,
            "warn_count": 33,
            "fail_count": 53
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_gladioli": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 7600000.0,
              "upper": 9100000.0,
              "final_lower": 7600000.0,
              "final_upper": 9100000.0,
              "warn_lower": 7800000.0,
              "warn_upper": 8700000.0,
              "source": "computed",
              "ml_lower": 7699784.33,
              "ml_upper": 9052299.0,
              "auto_lower": 7699784.33,
              "auto_upper": 8774562.98,
              "refseq_lower": 8050350.86,
              "refseq_upper": 9032429.8
            },
            {
              "metric": "GC_Content",
              "lower": 67.39,
              "upper": 68.31,
              "final_lower": 67.39,
              "final_upper": 68.31,
              "warn_lower": 67.8,
              "warn_upper": 68.3,
              "source": "computed",
              "ml_lower": 67.3975,
              "ml_upper": 68.3084,
              "auto_lower": 67.7128305,
              "auto_upper": 68.3083585,
              "refseq_lower": 67.410682,
              "refseq_upper": 68.258926
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6600.0,
              "upper": 8100.0,
              "final_lower": 6600.0,
              "final_upper": 8100.0,
              "warn_lower": 6700.0,
              "warn_upper": 7600.0,
              "source": "computed",
              "ml_lower": 6666.84,
              "ml_upper": 8037.0,
              "auto_lower": 6666.835,
              "auto_upper": 7615.62,
              "refseq_lower": 6960.37,
              "refseq_upper": 8024.39
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.1,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 91.4887,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 1.08,
              "warn_upper": 4.0,
              "source": "computed",
              "ml_lower": 1.08,
              "ml_upper": 4.18,
              "auto_lower": 1.0814,
              "auto_upper": 4.178249999999996,
              "refseq_lower": 1.9626,
              "refseq_upper": 2.9932000000000003
            },
            {
              "metric": "N50",
              "lower": 58000.0,
              "upper": null,
              "final_lower": 58000.0,
              "final_upper": null,
              "warn_lower": 75000.0,
              "warn_upper": 450869.71,
              "source": "computed",
              "ml_lower": 58206.06,
              "ml_upper": 450869.71,
              "auto_lower": 58206.055,
              "auto_upper": 450869.7099999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 390.0,
              "final_lower": null,
              "final_upper": 390.0,
              "warn_lower": 63.38,
              "warn_upper": 300.0,
              "source": "computed",
              "ml_lower": 63.38,
              "ml_upper": 388.5,
              "auto_lower": 63.38,
              "auto_upper": 388.50499999999806,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 203484.11,
              "warn_upper": 1209208.09,
              "source": "computed",
              "ml_lower": 203484.11,
              "ml_upper": 1209208.09,
              "auto_lower": 203484.11,
              "auto_upper": 1209208.0899999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 270,
            "refseq_count": 27,
            "final_count": 270,
            "filtered_out_count": 0,
            "pass_count": 238,
            "warn_count": 32,
            "fail_count": 17
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_mallei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 7400000.0,
              "final_lower": 5200000.0,
              "final_upper": 7400000.0,
              "warn_lower": 6900000.0,
              "warn_upper": 7400000.0,
              "source": "computed",
              "ml_lower": 5232401.0,
              "ml_upper": 7396386.17,
              "auto_lower": 6927613.305,
              "auto_upper": 7396386.169999999,
              "refseq_lower": 5262450.37,
              "refseq_upper": 5906639.32
            },
            {
              "metric": "GC_Content",
              "lower": 67.89,
              "upper": 68.52,
              "final_lower": 67.89,
              "final_upper": 68.52,
              "warn_lower": 67.95,
              "warn_upper": 68.31,
              "source": "computed",
              "ml_lower": 67.8935,
              "ml_upper": 68.5138,
              "auto_lower": 67.893474,
              "auto_upper": 68.328139,
              "refseq_lower": 68.355907,
              "refseq_upper": 68.511641
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4700.0,
              "upper": 6400.0,
              "final_lower": 4700.0,
              "final_upper": 6400.0,
              "warn_lower": 5800.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 4755.0,
              "ml_upper": 6391.69,
              "auto_lower": 5797.435,
              "auto_upper": 6391.694999999999,
              "refseq_lower": 4789.17,
              "refseq_upper": 5358.24
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.02,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.15429999999999,
              "refseq_upper": 98.09
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.53,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.53,
              "ml_upper": 5.37,
              "auto_lower": 0.5343500000000001,
              "auto_upper": 3.22,
              "refseq_lower": 0.71,
              "refseq_upper": 5.3513
            },
            {
              "metric": "N50",
              "lower": 26000.0,
              "upper": null,
              "final_lower": 26000.0,
              "final_upper": null,
              "warn_lower": 36000.0,
              "warn_upper": 244486.26,
              "source": "computed",
              "ml_lower": 26154.85,
              "ml_upper": 244486.26,
              "auto_lower": 26154.85,
              "auto_upper": 244486.25999999943,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 620.0,
              "final_lower": null,
              "final_upper": 620.0,
              "warn_lower": 128.44,
              "warn_upper": 480.0,
              "source": "computed",
              "ml_lower": 128.44,
              "ml_upper": 616.56,
              "auto_lower": 128.435,
              "auto_upper": 616.5649999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 108972.44,
              "warn_upper": 828259.16,
              "source": "computed",
              "ml_lower": 108972.44,
              "ml_upper": 828259.16,
              "auto_lower": 108972.435,
              "auto_upper": 828259.1649999979,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 5688,
            "refseq_count": 35,
            "final_count": 5688,
            "filtered_out_count": 0,
            "pass_count": 5268,
            "warn_count": 506,
            "fail_count": 597
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_multivorans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6000000.0,
              "upper": 7300000.0,
              "final_lower": 6000000.0,
              "final_upper": 7300000.0,
              "warn_lower": 6100000.0,
              "warn_upper": 6900000.0,
              "source": "computed",
              "ml_lower": 6062703.65,
              "ml_upper": 7281867.0,
              "auto_lower": 6062703.65,
              "auto_upper": 7062494.65,
              "refseq_lower": 6220055.925,
              "refseq_upper": 7212237.464999999
            },
            {
              "metric": "GC_Content",
              "lower": 66.54,
              "upper": 67.47,
              "final_lower": 66.54,
              "final_upper": 67.47,
              "warn_lower": 66.77,
              "warn_upper": 67.45,
              "source": "computed",
              "ml_lower": 66.5427,
              "ml_upper": 67.4687,
              "auto_lower": 66.54269500000001,
              "auto_upper": 67.468735,
              "refseq_lower": 66.619795,
              "refseq_upper": 67.2988165
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6700.0,
              "final_lower": 5300.0,
              "final_upper": 6700.0,
              "warn_lower": 5500.0,
              "warn_upper": 6500.0,
              "source": "computed",
              "ml_lower": 5371.95,
              "ml_upper": 6695.0,
              "auto_lower": 5371.95,
              "auto_upper": 6618.950000000001,
              "refseq_lower": 5678.63,
              "refseq_upper": 6647.825
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.62,
              "ml_upper": 100.0,
              "auto_lower": 99.9465,
              "auto_upper": 100.0,
              "refseq_lower": 96.7883,
              "refseq_upper": 99.33
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.54,
              "auto_lower": 0.0,
              "auto_upper": 0.7850000000000023,
              "refseq_lower": 0.49019999999999997,
              "refseq_upper": 3.448199999999999
            },
            {
              "metric": "N50",
              "lower": 22000.0,
              "upper": null,
              "final_lower": 22000.0,
              "final_upper": null,
              "warn_lower": 31000.0,
              "warn_upper": 637145.45,
              "source": "computed",
              "ml_lower": 22984.45,
              "ml_upper": 637145.45,
              "auto_lower": 22984.45,
              "auto_upper": 637145.45,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 710.0,
              "final_lower": null,
              "final_upper": 710.0,
              "warn_lower": 42.25,
              "warn_upper": 620.0,
              "source": "computed",
              "ml_lower": 42.25,
              "ml_upper": 703.35,
              "auto_lower": 42.25,
              "auto_upper": 703.35,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 106995.05,
              "warn_upper": 1406411.0,
              "source": "computed",
              "ml_lower": 106995.05,
              "ml_upper": 1406411.0,
              "auto_lower": 106995.05,
              "auto_upper": 1406411.0000000016,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 531,
            "refseq_count": 52,
            "final_count": 531,
            "filtered_out_count": 0,
            "pass_count": 488,
            "warn_count": 63,
            "fail_count": 32
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_orbicola": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6400000.0,
              "upper": 8100000.0,
              "final_lower": 6400000.0,
              "final_upper": 8100000.0,
              "warn_lower": 6700000.0,
              "warn_upper": 8000000.0,
              "source": "computed",
              "ml_lower": 6428668.4,
              "ml_upper": 8075815.2,
              "auto_lower": 6428668.4,
              "auto_upper": 8075815.2,
              "refseq_lower": 7971389.0,
              "refseq_upper": 7971389.0
            },
            {
              "metric": "GC_Content",
              "lower": 66.48,
              "upper": 67.19,
              "final_lower": 66.48,
              "final_upper": 67.19,
              "warn_lower": 66.58,
              "warn_upper": 67.14,
              "source": "computed",
              "ml_lower": 66.4849,
              "ml_upper": 67.1832,
              "auto_lower": 66.48488,
              "auto_upper": 67.18322,
              "refseq_lower": 66.5951,
              "refseq_upper": 66.5951
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5700.0,
              "upper": 8100.0,
              "final_lower": 5700.0,
              "final_upper": 8100.0,
              "warn_lower": 6200.0,
              "warn_upper": 7900.0,
              "source": "computed",
              "ml_lower": 5784.8,
              "ml_upper": 8027.6,
              "auto_lower": 5784.8,
              "auto_upper": 8027.6,
              "refseq_lower": 7287.0,
              "refseq_upper": 7287.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.75,
              "ml_upper": 100.0,
              "auto_lower": 99.754,
              "auto_upper": 100.0,
              "refseq_lower": 100.0,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 2.79,
              "auto_lower": 0.01,
              "auto_upper": 2.792000000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 8000.0,
              "upper": null,
              "final_lower": 8000.0,
              "final_upper": null,
              "warn_lower": 10000.0,
              "warn_upper": 1039725.2,
              "source": "computed",
              "ml_lower": 8215.4,
              "ml_upper": 1039725.2,
              "auto_lower": 8215.4,
              "auto_upper": 1039725.2000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 1800.0,
              "final_lower": null,
              "final_upper": 1800.0,
              "warn_lower": 18.0,
              "warn_upper": 1520.0,
              "source": "computed",
              "ml_lower": 18.0,
              "ml_upper": 1794.6,
              "auto_lower": 18.0,
              "auto_upper": 1794.6000000000013,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 67952.2,
              "warn_upper": 2087166.4,
              "source": "computed",
              "ml_lower": 67952.2,
              "ml_upper": 2087166.4,
              "auto_lower": 67952.2,
              "auto_upper": 2087166.4000000006,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 241,
            "refseq_count": 1,
            "final_count": 241,
            "filtered_out_count": 0,
            "pass_count": 216,
            "warn_count": 25,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_seminalis": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 7600000.0,
              "upper": 8000000.0,
              "final_lower": 7600000.0,
              "final_upper": 8000000.0,
              "warn_lower": 7600000.0,
              "warn_upper": 8000000.0,
              "source": "computed",
              "ml_lower": 7615815.0,
              "ml_upper": 7983246.0,
              "auto_lower": 7615815.0,
              "auto_upper": 7983246.0,
              "refseq_lower": 7648944.0,
              "refseq_upper": 8022336.0
            },
            {
              "metric": "GC_Content",
              "lower": 67.07,
              "upper": 67.35,
              "final_lower": 67.07,
              "final_upper": 67.35,
              "warn_lower": 67.07,
              "warn_upper": 67.35,
              "source": "computed",
              "ml_lower": 67.0755,
              "ml_upper": 67.3458,
              "auto_lower": 67.07548533516317,
              "auto_upper": 67.34580586582,
              "refseq_lower": 67.0304,
              "refseq_upper": 67.2978
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6800.0,
              "upper": 7200.0,
              "final_lower": 6800.0,
              "final_upper": 7200.0,
              "warn_lower": 6800.0,
              "warn_upper": 7200.0,
              "source": "computed",
              "ml_lower": 6826.0,
              "ml_upper": 7153.0,
              "auto_lower": 6826.0,
              "auto_upper": 7153.0,
              "refseq_lower": 6819.28,
              "refseq_upper": 7290.565
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.83,
              "refseq_upper": 99.89
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.02,
              "auto_lower": 0.01,
              "auto_upper": 0.02,
              "refseq_lower": 0.03,
              "refseq_upper": 0.03
            },
            {
              "metric": "N50",
              "lower": 403000.0,
              "upper": null,
              "final_lower": 403000.0,
              "final_upper": null,
              "warn_lower": 403000.0,
              "warn_upper": 558339.0,
              "source": "computed",
              "ml_lower": 403602.0,
              "ml_upper": 558339.0,
              "auto_lower": 403602.0,
              "auto_upper": 558339.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 50.0,
              "final_lower": null,
              "final_upper": 50.0,
              "warn_lower": 34.0,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 34.0,
              "ml_upper": 48.0,
              "auto_lower": 34.0,
              "auto_upper": 48.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 662914.0,
              "warn_upper": 896441.0,
              "source": "computed",
              "ml_lower": 662914.0,
              "ml_upper": 896441.0,
              "auto_lower": 662914.0,
              "auto_upper": 896441.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 4,
            "refseq_count": 4,
            "final_count": 4,
            "filtered_out_count": 0,
            "pass_count": 1,
            "warn_count": 0,
            "fail_count": 24
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_stagnalis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 7400000.0,
              "upper": 8200000.0,
              "final_lower": 7400000.0,
              "final_upper": 8200000.0,
              "warn_lower": 7500000.0,
              "warn_upper": 8100000.0,
              "source": "computed",
              "ml_lower": 7451221.2,
              "ml_upper": 8179586.0,
              "auto_lower": 7451221.2,
              "auto_upper": 8179586.0,
              "refseq_lower": 7584414.74,
              "refseq_upper": 7704747.26
            },
            {
              "metric": "GC_Content",
              "lower": 67.21,
              "upper": 67.76,
              "final_lower": 67.21,
              "final_upper": 67.76,
              "warn_lower": 67.33,
              "warn_upper": 67.75,
              "source": "computed",
              "ml_lower": 67.2172,
              "ml_upper": 67.7591,
              "auto_lower": 67.217176,
              "auto_upper": 67.75906,
              "refseq_lower": 67.63001000000001,
              "refseq_upper": 67.65178999999999
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6600.0,
              "upper": 7300.0,
              "final_lower": 6600.0,
              "final_upper": 7300.0,
              "warn_lower": 6600.0,
              "warn_upper": 7200.0,
              "source": "computed",
              "ml_lower": 6647.44,
              "ml_upper": 7298.08,
              "auto_lower": 6647.44,
              "auto_upper": 7298.08,
              "refseq_lower": 6852.43,
              "refseq_upper": 6937.57
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.89,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 99.89,
              "refseq_upper": 99.89
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.11,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.11,
              "ml_upper": 1.35,
              "auto_lower": 0.11,
              "auto_upper": 1.3456000000000001,
              "refseq_lower": 0.64065,
              "refseq_upper": 0.76935
            },
            {
              "metric": "N50",
              "lower": 129000.0,
              "upper": null,
              "final_lower": 129000.0,
              "final_upper": null,
              "warn_lower": 153000.0,
              "warn_upper": 356798.72,
              "source": "computed",
              "ml_lower": 129110.56,
              "ml_upper": 356798.72,
              "auto_lower": 129110.56,
              "auto_upper": 356798.7200000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 240.0,
              "final_lower": null,
              "final_upper": 240.0,
              "warn_lower": 87.64,
              "warn_upper": 220.0,
              "source": "computed",
              "ml_lower": 87.64,
              "ml_upper": 231.0,
              "auto_lower": 87.64,
              "auto_upper": 231.00000000000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 360558.44,
              "warn_upper": 1038485.24,
              "source": "computed",
              "ml_lower": 360558.44,
              "ml_upper": 1038485.24,
              "auto_lower": 360558.44,
              "auto_upper": 1038485.2400000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 89,
            "refseq_count": 2,
            "final_count": 89,
            "filtered_out_count": 0,
            "pass_count": 88,
            "warn_count": 4,
            "fail_count": 16
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_ubonensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6300000.0,
              "upper": 8300000.0,
              "final_lower": 6300000.0,
              "final_upper": 8300000.0,
              "warn_lower": 7000000.0,
              "warn_upper": 8100000.0,
              "source": "computed",
              "ml_lower": 6383779.16,
              "ml_upper": 8219642.28,
              "auto_lower": 6383779.16,
              "auto_upper": 8219642.279999998,
              "refseq_lower": 6699971.78,
              "refseq_upper": 8026744.17
            },
            {
              "metric": "GC_Content",
              "lower": 66.78,
              "upper": 67.55,
              "final_lower": 66.78,
              "final_upper": 67.55,
              "warn_lower": 66.84,
              "warn_upper": 67.52,
              "source": "computed",
              "ml_lower": 66.7805,
              "ml_upper": 67.5465,
              "auto_lower": 66.780548,
              "auto_upper": 67.546532,
              "refseq_lower": 66.793732,
              "refseq_upper": 67.35869100000001
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5700.0,
              "upper": 7600.0,
              "final_lower": 5700.0,
              "final_upper": 7600.0,
              "warn_lower": 6200.0,
              "warn_upper": 7400.0,
              "source": "computed",
              "ml_lower": 5773.2,
              "ml_upper": 7543.4,
              "auto_lower": 5773.2,
              "auto_upper": 7543.399999999999,
              "refseq_lower": 6053.77,
              "refseq_upper": 7287.66
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.14,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.1799,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.04,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 2.64,
              "auto_lower": 0.0372,
              "auto_upper": 2.1087999999999987,
              "refseq_lower": 0.585,
              "refseq_upper": 2.6136
            },
            {
              "metric": "N50",
              "lower": 97000.0,
              "upper": null,
              "final_lower": 97000.0,
              "final_upper": null,
              "warn_lower": 128000.0,
              "warn_upper": 358671.32,
              "source": "computed",
              "ml_lower": 97319.6,
              "ml_upper": 358671.32,
              "auto_lower": 97319.6,
              "auto_upper": 358671.3199999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 68.72,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 68.72,
              "ml_upper": 326.56,
              "auto_lower": 68.72,
              "auto_upper": 326.55999999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 313090.52,
              "warn_upper": 929939.84,
              "source": "computed",
              "ml_lower": 313090.52,
              "ml_upper": 929939.84,
              "auto_lower": 313090.52,
              "auto_upper": 929939.84,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 249,
            "refseq_count": 7,
            "final_count": 249,
            "filtered_out_count": 0,
            "pass_count": 227,
            "warn_count": 27,
            "fail_count": 16
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Burkholderia_vietnamiensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6100000.0,
              "upper": 7700000.0,
              "final_lower": 6100000.0,
              "final_upper": 7700000.0,
              "warn_lower": 6200000.0,
              "warn_upper": 7600000.0,
              "source": "computed",
              "ml_lower": 6194601.2,
              "ml_upper": 7659722.8,
              "auto_lower": 6194601.2,
              "auto_upper": 7659722.8,
              "refseq_lower": 6613025.3,
              "refseq_upper": 7083730.75
            },
            {
              "metric": "GC_Content",
              "lower": 66.28,
              "upper": 67.44,
              "final_lower": 66.28,
              "final_upper": 67.44,
              "warn_lower": 66.4,
              "warn_upper": 67.35,
              "source": "computed",
              "ml_lower": 66.2883,
              "ml_upper": 67.4397,
              "auto_lower": 66.28827,
              "auto_upper": 67.43974,
              "refseq_lower": 66.76845,
              "refseq_upper": 67.23052
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5500.0,
              "upper": 7100.0,
              "final_lower": 5500.0,
              "final_upper": 7100.0,
              "warn_lower": 5600.0,
              "warn_upper": 7000.0,
              "source": "computed",
              "ml_lower": 5576.0,
              "ml_upper": 7060.6,
              "auto_lower": 5576.0,
              "auto_upper": 7060.6,
              "refseq_lower": 5909.0,
              "refseq_upper": 6421.2
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.62,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.6465,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.07,
              "auto_lower": 0.0,
              "auto_upper": 2.071999999999999,
              "refseq_lower": 0.09,
              "refseq_upper": 0.43
            },
            {
              "metric": "N50",
              "lower": 52000.0,
              "upper": null,
              "final_lower": 52000.0,
              "final_upper": null,
              "warn_lower": 66000.0,
              "warn_upper": 292460.7,
              "source": "computed",
              "ml_lower": 52965.0,
              "ml_upper": 292460.7,
              "auto_lower": 52965.0,
              "auto_upper": 292460.6999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 350.0,
              "final_lower": null,
              "final_upper": 350.0,
              "warn_lower": 82.7,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 82.7,
              "ml_upper": 348.8,
              "auto_lower": 82.7,
              "auto_upper": 348.7999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 180911.6,
              "warn_upper": 871756.2,
              "source": "computed",
              "ml_lower": 180911.6,
              "ml_upper": 871756.2,
              "auto_lower": 180911.6,
              "auto_upper": 871756.1999999995,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 181,
            "refseq_count": 11,
            "final_count": 181,
            "filtered_out_count": 0,
            "pass_count": 160,
            "warn_count": 24,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Campylobacter_coli": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1600000.0,
              "upper": 2200000.0,
              "final_lower": 1600000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1600000.0,
              "warn_upper": 1900000.0,
              "source": "computed",
              "ml_lower": 1635329.25,
              "ml_upper": 2127266.0,
              "auto_lower": 1635329.25,
              "auto_upper": 1926082.5,
              "refseq_lower": 1664488.365,
              "refseq_upper": 2084793.1150000002
            },
            {
              "metric": "GC_Content",
              "lower": 30.66,
              "upper": 31.51,
              "final_lower": 30.66,
              "final_upper": 31.51,
              "warn_lower": 30.96,
              "warn_upper": 31.43,
              "source": "computed",
              "ml_lower": 30.6691,
              "ml_upper": 31.5028,
              "auto_lower": 30.907645,
              "auto_upper": 31.47281,
              "refseq_lower": 30.7418545,
              "refseq_upper": 31.4993875
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2400.0,
              "final_lower": 1600.0,
              "final_upper": 2400.0,
              "warn_lower": 1600.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1680.0,
              "ml_upper": 2301.0,
              "auto_lower": 1680.0,
              "auto_upper": 2106.0,
              "refseq_lower": 1722.55,
              "refseq_upper": 2248.675
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.78,
              "ml_upper": 100.0,
              "auto_lower": 99.93,
              "auto_upper": 100.0,
              "refseq_lower": 95.3078,
              "refseq_upper": 99.14815
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 13.0,
              "final_lower": null,
              "final_upper": 13.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 12.51,
              "auto_lower": 0.0,
              "auto_upper": 0.27,
              "refseq_lower": 0.05,
              "refseq_upper": 12.257699999999998
            },
            {
              "metric": "N50",
              "lower": 25000.0,
              "upper": null,
              "final_lower": 25000.0,
              "final_upper": null,
              "warn_lower": 37000.0,
              "warn_upper": 285528.75,
              "source": "computed",
              "ml_lower": 25982.7,
              "ml_upper": 285528.75,
              "auto_lower": 25982.7,
              "auto_upper": 285528.74999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 14.0,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 14.0,
              "ml_upper": 171.0,
              "auto_lower": 14.0,
              "auto_upper": 171.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 76704.8,
              "warn_upper": 600036.6,
              "source": "computed",
              "ml_lower": 76704.8,
              "ml_upper": 600036.6,
              "auto_lower": 76704.8,
              "auto_upper": 600036.6,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 32891,
            "refseq_count": 92,
            "final_count": 32891,
            "filtered_out_count": 0,
            "pass_count": 30522,
            "warn_count": 3305,
            "fail_count": 1322
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1600000.0,
              "upper": 2200000.0,
              "final_lower": 1600000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1600000.0,
              "warn_upper": 1800000.0,
              "source": "computed",
              "ml_lower": 1635530.88,
              "ml_upper": 2127266.0,
              "auto_lower": 1635530.875,
              "auto_upper": 1818666.32,
              "refseq_lower": 1664488.365,
              "refseq_upper": 2084793.1150000002
            },
            {
              "metric": "GC_Content",
              "lower": 30.0,
              "upper": 32.0,
              "final_lower": 30.0,
              "final_upper": 32.0,
              "warn_lower": 31.0,
              "warn_upper": 31.0,
              "source": "computed",
              "ml_lower": 30.6691,
              "ml_upper": 31.5028,
              "auto_lower": 31.0,
              "auto_upper": 31.0,
              "refseq_lower": 30.7418545,
              "refseq_upper": 31.4993875
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2400.0,
              "final_lower": 1600.0,
              "final_upper": 2400.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1667.82,
              "ml_upper": 2301.0,
              "auto_lower": 1667.82,
              "auto_upper": 1929.515,
              "refseq_lower": 1722.55,
              "refseq_upper": 2248.675
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 94.78,
              "ml_upper": 99.99,
              "auto_lower": 99.91485,
              "auto_upper": 99.99,
              "refseq_lower": 95.3078,
              "refseq_upper": 99.14815
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 13.0,
              "final_lower": null,
              "final_upper": 13.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 12.51,
              "auto_lower": 0.01,
              "auto_upper": 0.21150000000000008,
              "refseq_lower": 0.05,
              "refseq_upper": 12.257699999999998
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 32000.0,
              "warn_upper": 260968.54,
              "source": "computed",
              "ml_lower": 31173.16,
              "ml_upper": 260968.54,
              "auto_lower": 31173.165,
              "auto_upper": 260968.54,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 20.0,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 20.0,
              "ml_upper": 114.64,
              "auto_lower": 20.0,
              "auto_upper": 114.635,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 92578.17,
              "warn_upper": 399269.33,
              "source": "computed",
              "ml_lower": 92578.17,
              "ml_upper": 399269.33,
              "auto_lower": 92578.17,
              "auto_upper": 399269.33,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 98,
            "refseq_count": 92,
            "final_count": 98,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Campylobacter_concheus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1400000.0,
              "upper": 1700000.0,
              "final_lower": 1400000.0,
              "final_upper": 1700000.0,
              "warn_lower": 1400000.0,
              "warn_upper": 1700000.0,
              "source": "computed",
              "ml_lower": 1446015.95,
              "ml_upper": 1632002.74,
              "auto_lower": 1446015.95,
              "auto_upper": 1632002.7400000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 29.34,
              "upper": 29.94,
              "final_lower": 29.34,
              "final_upper": 29.94,
              "warn_lower": 29.39,
              "warn_upper": 29.89,
              "source": "computed",
              "ml_lower": 29.34,
              "ml_upper": 29.94,
              "auto_lower": 29.335075,
              "auto_upper": 29.936533,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1400.0,
              "upper": 1800.0,
              "final_lower": 1400.0,
              "final_upper": 1800.0,
              "warn_lower": 1400.0,
              "warn_upper": 1700.0,
              "source": "computed",
              "ml_lower": 1477.65,
              "ml_upper": 1713.63,
              "auto_lower": 1477.65,
              "auto_upper": 1713.6300000000008,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.99,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.14,
              "auto_lower": 0.0073,
              "auto_upper": 0.1427000000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 38000.0,
              "upper": null,
              "final_lower": 38000.0,
              "final_upper": null,
              "warn_lower": 56000.0,
              "warn_upper": 210671.2,
              "source": "computed",
              "ml_lower": 38043.92,
              "ml_upper": 210671.2,
              "auto_lower": 38043.92,
              "auto_upper": 210671.2000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 20.73,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 20.73,
              "ml_upper": 108.81,
              "auto_lower": 20.73,
              "auto_upper": 108.81000000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 113558.85,
              "warn_upper": 426845.05,
              "source": "computed",
              "ml_lower": 113558.85,
              "ml_upper": 426845.05,
              "auto_lower": 113558.85,
              "auto_upper": 426845.05000000005,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 147,
            "refseq_count": 0,
            "final_count": 147,
            "filtered_out_count": 0,
            "pass_count": 131,
            "warn_count": 15,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Campylobacter_fetus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2200000.0,
              "final_lower": 1700000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1724635.58,
              "ml_upper": 2188312.0,
              "auto_lower": 1724635.58,
              "auto_upper": 1978578.3399999999,
              "refseq_lower": 1763779.495,
              "refseq_upper": 2174773.785
            },
            {
              "metric": "GC_Content",
              "lower": 32.99,
              "upper": 33.46,
              "final_lower": 32.99,
              "final_upper": 33.46,
              "warn_lower": 33.01,
              "warn_upper": 33.27,
              "source": "computed",
              "ml_lower": 32.9968,
              "ml_upper": 33.4564,
              "auto_lower": 32.996834,
              "auto_upper": 33.279579,
              "refseq_lower": 33.0592195,
              "refseq_upper": 33.438173500000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2400.0,
              "final_lower": 1700.0,
              "final_upper": 2400.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1729.59,
              "ml_upper": 2357.0,
              "auto_lower": 1729.59,
              "auto_upper": 2111.41,
              "refseq_lower": 1793.435,
              "refseq_upper": 2356.855
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 91.72,
              "ml_upper": 99.99,
              "auto_lower": 99.92,
              "auto_upper": 99.99,
              "refseq_lower": 91.72145,
              "refseq_upper": 98.14375000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 7.03,
              "auto_lower": 0.05,
              "auto_upper": 1.9,
              "refseq_lower": 0.05,
              "refseq_upper": 6.9691
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 82000.0,
              "warn_upper": 319144.82,
              "source": "computed",
              "ml_lower": 59666.8,
              "ml_upper": 319144.82,
              "auto_lower": 59666.8,
              "auto_upper": 319144.82,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 26.0,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 26.0,
              "ml_upper": 117.41,
              "auto_lower": 26.0,
              "auto_upper": 117.40999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 156291.18,
              "warn_upper": 727180.05,
              "source": "computed",
              "ml_lower": 156291.18,
              "ml_upper": 727180.05,
              "auto_lower": 156291.18,
              "auto_upper": 727180.0499999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 519,
            "refseq_count": 30,
            "final_count": 519,
            "filtered_out_count": 0,
            "pass_count": 495,
            "warn_count": 39,
            "fail_count": 40
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2200000.0,
              "final_lower": 1700000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1724635.58,
              "ml_upper": 2188312.0,
              "auto_lower": 1724635.58,
              "auto_upper": 1978578.3399999999,
              "refseq_lower": 1763779.495,
              "refseq_upper": 2174773.785
            },
            {
              "metric": "GC_Content",
              "lower": 32.0,
              "upper": 33.46,
              "final_lower": 32.0,
              "final_upper": 33.46,
              "warn_lower": 33.01,
              "warn_upper": 33.27,
              "source": "pinned",
              "ml_lower": 32.9968,
              "ml_upper": 33.4564,
              "auto_lower": 32.996834,
              "auto_upper": 33.279579,
              "refseq_lower": 33.0592195,
              "refseq_upper": 33.438173500000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2400.0,
              "final_lower": 1700.0,
              "final_upper": 2400.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1729.59,
              "ml_upper": 2357.0,
              "auto_lower": 1729.59,
              "auto_upper": 2111.41,
              "refseq_lower": 1793.435,
              "refseq_upper": 2356.855
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 91.72,
              "ml_upper": 99.99,
              "auto_lower": 99.92,
              "auto_upper": 99.99,
              "refseq_lower": 91.72145,
              "refseq_upper": 98.14375000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 7.03,
              "auto_lower": 0.05,
              "auto_upper": 1.9,
              "refseq_lower": 0.05,
              "refseq_upper": 6.9691
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 82000.0,
              "warn_upper": 319144.82,
              "source": "computed",
              "ml_lower": 59666.8,
              "ml_upper": 319144.82,
              "auto_lower": 59666.8,
              "auto_upper": 319144.82,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 26.0,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 26.0,
              "ml_upper": 117.41,
              "auto_lower": 26.0,
              "auto_upper": 117.40999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 156291.18,
              "warn_upper": 727180.05,
              "source": "computed",
              "ml_lower": 156291.18,
              "ml_upper": 727180.05,
              "auto_lower": 156291.18,
              "auto_upper": 727180.0499999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 519,
            "refseq_count": 30,
            "final_count": 519,
            "filtered_out_count": 0,
            "pass_count": 495,
            "warn_count": 39,
            "fail_count": 40
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Campylobacter_hyointestinalis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1600000.0,
              "upper": 2000000.0,
              "final_lower": 1600000.0,
              "final_upper": 2000000.0,
              "warn_lower": 1600000.0,
              "warn_upper": 1900000.0,
              "source": "computed",
              "ml_lower": 1688797.96,
              "ml_upper": 1907711.6,
              "auto_lower": 1688797.96,
              "auto_upper": 1907711.5999999999,
              "refseq_lower": 1753279.575,
              "refseq_upper": 1806919.775
            },
            {
              "metric": "GC_Content",
              "lower": 33.32,
              "upper": 34.44,
              "final_lower": 33.32,
              "final_upper": 34.44,
              "warn_lower": 33.81,
              "warn_upper": 34.42,
              "source": "computed",
              "ml_lower": 33.3212,
              "ml_upper": 34.4386,
              "auto_lower": 33.77872,
              "auto_upper": 34.43858,
              "refseq_lower": 33.326882499999996,
              "refseq_upper": 34.2596875
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2100.0,
              "final_lower": 1700.0,
              "final_upper": 2100.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1726.8,
              "ml_upper": 2071.04,
              "auto_lower": 1726.8,
              "auto_upper": 2071.04,
              "refseq_lower": 1835.35,
              "refseq_upper": 1892.475
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 99.21,
              "ml_upper": 99.99,
              "auto_lower": 99.94,
              "auto_upper": 99.9944,
              "refseq_lower": 99.21,
              "refseq_upper": 99.58525
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 1.08,
              "auto_lower": 0.0256,
              "auto_upper": 0.6027999999999998,
              "refseq_lower": 0.41474999999999995,
              "refseq_upper": 1.08
            },
            {
              "metric": "N50",
              "lower": 49000.0,
              "upper": null,
              "final_lower": 49000.0,
              "final_upper": null,
              "warn_lower": 56000.0,
              "warn_upper": 553976.28,
              "source": "computed",
              "ml_lower": 49154.68,
              "ml_upper": 553976.28,
              "auto_lower": 49154.68,
              "auto_upper": 553976.2799999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 10.12,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 10.12,
              "ml_upper": 88.32,
              "auto_lower": 10.120000000000001,
              "auto_upper": 88.32,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 106341.36,
              "warn_upper": 694479.4,
              "source": "computed",
              "ml_lower": 106341.36,
              "ml_upper": 694479.4,
              "auto_lower": 106341.36,
              "auto_upper": 694479.4,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 113,
            "refseq_count": 6,
            "final_count": 113,
            "filtered_out_count": 0,
            "pass_count": 107,
            "warn_count": 8,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Campylobacter_jejuni": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1500000.0,
              "upper": 2000000.0,
              "final_lower": 1500000.0,
              "final_upper": 2000000.0,
              "warn_lower": 1500000.0,
              "warn_upper": 1900000.0,
              "source": "computed",
              "ml_lower": 1567232.0,
              "ml_upper": 1943896.0,
              "auto_lower": 1586698.55,
              "auto_upper": 1856845.8999999994,
              "refseq_lower": 1603827.01,
              "refseq_upper": 1909256.51
            },
            {
              "metric": "GC_Content",
              "lower": 30.06,
              "upper": 30.85,
              "final_lower": 30.06,
              "final_upper": 30.85,
              "warn_lower": 30.13,
              "warn_upper": 30.53,
              "source": "computed",
              "ml_lower": 30.0659,
              "ml_upper": 30.8493,
              "auto_lower": 30.065894999999998,
              "auto_upper": 30.5765,
              "refseq_lower": 30.109175,
              "refseq_upper": 30.650596
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2200.0,
              "final_lower": 1600.0,
              "final_upper": 2200.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1618.0,
              "ml_upper": 2109.0,
              "auto_lower": 1618.0,
              "auto_upper": 2034.0,
              "refseq_lower": 1653.0,
              "refseq_upper": 2035.3300000000002
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.69,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 96.671,
              "refseq_upper": 99.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 9.65,
              "auto_lower": 0.01,
              "auto_upper": 0.3,
              "refseq_lower": 0.16,
              "refseq_upper": 1.125
            },
            {
              "metric": "N50",
              "lower": 23000.0,
              "upper": null,
              "final_lower": 23000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 334680.03,
              "source": "computed",
              "ml_lower": 23578.98,
              "ml_upper": 334680.03,
              "auto_lower": 23578.975,
              "auto_upper": 334680.025,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 160.0,
              "final_lower": null,
              "final_upper": 160.0,
              "warn_lower": 13.0,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 13.0,
              "ml_upper": 157.02,
              "auto_lower": 13.0,
              "auto_upper": 157.02499999999418,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 73025.2,
              "warn_upper": 632016.67,
              "source": "computed",
              "ml_lower": 73025.2,
              "ml_upper": 632016.67,
              "auto_lower": 73025.2,
              "auto_upper": 632016.6749999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 89596,
            "refseq_count": 503,
            "final_count": 89596,
            "filtered_out_count": 0,
            "pass_count": 83690,
            "warn_count": 6999,
            "fail_count": 4036
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1500000.0,
              "upper": 2100000.0,
              "final_lower": 1500000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1600000.0,
              "warn_upper": 1900000.0,
              "source": "pinned",
              "ml_lower": 1567232.0,
              "ml_upper": 1943896.0,
              "auto_lower": 1596720.285,
              "auto_upper": 1840734.135,
              "refseq_lower": 1603827.01,
              "refseq_upper": 1909256.51
            },
            {
              "metric": "GC_Content",
              "lower": 30.0,
              "upper": 31.0,
              "final_lower": 30.0,
              "final_upper": 31.0,
              "warn_lower": 30.0,
              "warn_upper": 31.0,
              "source": "computed",
              "ml_lower": 30.0,
              "ml_upper": 31.0,
              "auto_lower": 30.0,
              "auto_upper": 31.0,
              "refseq_lower": 30.109175,
              "refseq_upper": 30.650596
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2200.0,
              "final_lower": 1600.0,
              "final_upper": 2200.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1625.8,
              "ml_upper": 2109.0,
              "auto_lower": 1625.795,
              "auto_upper": 1993.145,
              "refseq_lower": 1653.0,
              "refseq_upper": 2035.3300000000002
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.69,
              "ml_upper": 100.0,
              "auto_lower": 99.9153,
              "auto_upper": 100.0,
              "refseq_lower": 96.671,
              "refseq_upper": 99.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.01,
              "warn_upper": 4.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 9.65,
              "auto_lower": 0.01,
              "auto_upper": 6.646450000000015,
              "refseq_lower": 0.16,
              "refseq_upper": 1.125
            },
            {
              "metric": "N50",
              "lower": 36000.0,
              "upper": null,
              "final_lower": 36000.0,
              "final_upper": null,
              "warn_lower": 46000.0,
              "warn_upper": 284509.93,
              "source": "computed",
              "ml_lower": 36062.72,
              "ml_upper": 284509.93,
              "auto_lower": 36062.72,
              "auto_upper": 284509.93000000046,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 20.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 20.0,
              "ml_upper": 114.41,
              "auto_lower": 20.0,
              "auto_upper": 114.41000000000008,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90020.42,
              "warn_upper": 559339.73,
              "source": "computed",
              "ml_lower": 90020.42,
              "ml_upper": 559339.73,
              "auto_lower": 90020.42,
              "auto_upper": 559339.73,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 654,
            "refseq_count": 503,
            "final_count": 654,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Campylobacter_lari": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1400000.0,
              "upper": 1800000.0,
              "final_lower": 1400000.0,
              "final_upper": 1800000.0,
              "warn_lower": 1400000.0,
              "warn_upper": 1700000.0,
              "source": "computed",
              "ml_lower": 1435345.02,
              "ml_upper": 1791508.0,
              "auto_lower": 1435345.015,
              "auto_upper": 1670606.5250000001,
              "refseq_lower": 1489700.81,
              "refseq_upper": 1762456.83
            },
            {
              "metric": "GC_Content",
              "lower": 29.26,
              "upper": 30.01,
              "final_lower": 29.26,
              "final_upper": 30.01,
              "warn_lower": 29.3,
              "warn_upper": 29.85,
              "source": "computed",
              "ml_lower": 29.2606,
              "ml_upper": 30.0073,
              "auto_lower": 29.260626499999997,
              "auto_upper": 29.9039085,
              "refseq_lower": 29.409892499999998,
              "refseq_upper": 29.996913
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1400.0,
              "upper": 1900.0,
              "final_lower": 1400.0,
              "final_upper": 1900.0,
              "warn_lower": 1400.0,
              "warn_upper": 1800.0,
              "source": "computed",
              "ml_lower": 1462.83,
              "ml_upper": 1809.0,
              "auto_lower": 1462.83,
              "auto_upper": 1746.255,
              "refseq_lower": 1541.47,
              "refseq_upper": 1788.085
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.36,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.9334,
              "refseq_upper": 98.94
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.38,
              "auto_lower": 0.0,
              "auto_upper": 0.22085000000000038,
              "refseq_lower": 0.1312,
              "refseq_upper": 2.34
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 46000.0,
              "warn_upper": 281333.26,
              "source": "computed",
              "ml_lower": 31669.8,
              "ml_upper": 281333.26,
              "auto_lower": 31669.8,
              "auto_upper": 281333.26,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 15.0,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 15.0,
              "ml_upper": 126.09,
              "auto_lower": 15.0,
              "auto_upper": 126.08500000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90335.02,
              "warn_upper": 558580.16,
              "source": "computed",
              "ml_lower": 90335.02,
              "ml_upper": 558580.16,
              "auto_lower": 90335.02,
              "auto_upper": 558580.1550000007,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 584,
            "refseq_count": 48,
            "final_count": 584,
            "filtered_out_count": 0,
            "pass_count": 545,
            "warn_count": 54,
            "fail_count": 35
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Campylobacter_upsaliensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1500000.0,
              "upper": 1900000.0,
              "final_lower": 1500000.0,
              "final_upper": 1900000.0,
              "warn_lower": 1500000.0,
              "warn_upper": 1800000.0,
              "source": "computed",
              "ml_lower": 1560990.08,
              "ml_upper": 1819130.32,
              "auto_lower": 1560990.08,
              "auto_upper": 1819130.32,
              "refseq_lower": 1629163.0,
              "refseq_upper": 1671337.0
            },
            {
              "metric": "GC_Content",
              "lower": 34.12,
              "upper": 35.11,
              "final_lower": 34.12,
              "final_upper": 35.11,
              "warn_lower": 34.27,
              "warn_upper": 35.08,
              "source": "computed",
              "ml_lower": 34.128,
              "ml_upper": 35.1084,
              "auto_lower": 34.127995999999996,
              "auto_upper": 35.102732,
              "refseq_lower": 35.025616,
              "refseq_upper": 35.107984
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2000.0,
              "final_lower": 1600.0,
              "final_upper": 2000.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1612.04,
              "ml_upper": 1984.96,
              "auto_lower": 1612.04,
              "auto_upper": 1984.96,
              "refseq_lower": 1699.13,
              "refseq_upper": 1724.87
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.19,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 98.19415,
              "refseq_upper": 99.01585
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 0.99,
              "auto_lower": 0.03,
              "auto_upper": 0.9896000000000004,
              "refseq_lower": 0.23095000000000002,
              "refseq_upper": 0.41905
            },
            {
              "metric": "N50",
              "lower": 26000.0,
              "upper": null,
              "final_lower": 26000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 193021.8,
              "source": "computed",
              "ml_lower": 26936.56,
              "ml_upper": 193021.8,
              "auto_lower": 26936.56,
              "auto_upper": 193021.80000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 32.0,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 32.0,
              "ml_upper": 172.92,
              "auto_lower": 32.0,
              "auto_upper": 172.92000000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 81083.36,
              "warn_upper": 371761.56,
              "source": "computed",
              "ml_lower": 81083.36,
              "ml_upper": 371761.56,
              "auto_lower": 81083.36,
              "auto_upper": 371761.56000000023,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 809,
            "refseq_count": 2,
            "final_count": 809,
            "filtered_out_count": 0,
            "pass_count": 748,
            "warn_count": 57,
            "fail_count": 56
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Candida_auris": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 12000000.0,
              "upper": 12400000.0,
              "final_lower": 12000000.0,
              "final_upper": 12400000.0,
              "warn_lower": 12000000.0,
              "warn_upper": 12400000.0,
              "source": "computed",
              "ml_lower": 12037629.0,
              "ml_upper": 12374235.0,
              "auto_lower": 12038417.22,
              "auto_upper": 12371245.1,
              "refseq_lower": 12071378.88,
              "refseq_upper": 12526836.7
            },
            {
              "metric": "GC_Content",
              "lower": 45.14,
              "upper": 45.33,
              "final_lower": 45.14,
              "final_upper": 45.33,
              "warn_lower": 45.15,
              "warn_upper": 45.32,
              "source": "computed",
              "ml_lower": 45.1499,
              "ml_upper": 45.3203,
              "auto_lower": 45.15074045189098,
              "auto_upper": 45.32034416058017,
              "refseq_lower": 45.195145000000004,
              "refseq_upper": 45.3289
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 10300.0,
              "upper": 12000.0,
              "final_lower": 10300.0,
              "final_upper": 12000.0,
              "warn_lower": 10400.0,
              "warn_upper": 11500.0,
              "source": "computed",
              "ml_lower": 10359.0,
              "ml_upper": 11929.0,
              "auto_lower": 10367.12,
              "auto_upper": 11815.03,
              "refseq_lower": 4910.14,
              "refseq_upper": 5672.87
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 93.0,
              "final_lower": null,
              "final_upper": 93.0,
              "warn_lower": 77.7,
              "warn_upper": 92.0,
              "source": "computed",
              "ml_lower": 77.7,
              "ml_upper": 92.17,
              "auto_lower": 78.9528,
              "auto_upper": 91.92060000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 435000.0,
              "upper": null,
              "final_lower": 435000.0,
              "final_upper": null,
              "warn_lower": 449000.0,
              "warn_upper": 1330311.0,
              "source": "computed",
              "ml_lower": 435929.0,
              "ml_upper": 1330311.0,
              "auto_lower": 437414.67,
              "auto_upper": 1330269.82,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 25.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 25.0,
              "ml_upper": 101.0,
              "auto_lower": 25.29,
              "auto_upper": 100.71000000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 825256.0,
              "warn_upper": 3253709.0,
              "source": "computed",
              "ml_lower": 825256.0,
              "ml_upper": 3253709.0,
              "auto_lower": 825461.03,
              "auto_upper": 2977441.080000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 59,
            "refseq_count": 59,
            "final_count": 59,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": [
                {
                  "signal": "frac_high_contamination",
                  "flag": "error",
                  "fraction": 1.0,
                  "count": 59,
                  "n": 59,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Caulobacter_vibrioides": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3900000.0,
              "upper": 4200000.0,
              "final_lower": 3900000.0,
              "final_upper": 4200000.0,
              "warn_lower": 3900000.0,
              "warn_upper": 4100000.0,
              "source": "computed",
              "ml_lower": 3961380.78,
              "ml_upper": 4144051.0,
              "auto_lower": 3961380.775,
              "auto_upper": 4036686.25,
              "refseq_lower": 4017639.125,
              "refseq_upper": 4143814.19
            },
            {
              "metric": "GC_Content",
              "lower": 67.04,
              "upper": 67.25,
              "final_lower": 67.04,
              "final_upper": 67.25,
              "warn_lower": 67.1,
              "warn_upper": 67.22,
              "source": "computed",
              "ml_lower": 67.0425,
              "ml_upper": 67.2404,
              "auto_lower": 67.04253750000001,
              "auto_upper": 67.2291625,
              "refseq_lower": 67.1278565,
              "refseq_upper": 67.23974199999999
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4300.0,
              "final_lower": 3600.0,
              "final_upper": 4300.0,
              "warn_lower": 3600.0,
              "warn_upper": 4300.0,
              "source": "computed",
              "ml_lower": 3670.15,
              "ml_upper": 4260.92,
              "auto_lower": 3670.15,
              "auto_upper": 4260.925,
              "refseq_lower": 3997.245,
              "refseq_upper": 4123.055
            },
            {
              "metric": "Completeness_Specific",
              "lower": 88.0,
              "upper": null,
              "final_lower": 88.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 88.98,
              "ml_upper": 100.0,
              "auto_lower": 99.49374999999999,
              "auto_upper": 100.0,
              "refseq_lower": 89.1641,
              "refseq_upper": 99.42895
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.86,
              "auto_lower": 0.0,
              "auto_upper": 3.2835000000000023,
              "refseq_lower": 1.54,
              "refseq_upper": 5.8222000000000005
            },
            {
              "metric": "N50",
              "lower": 6000.0,
              "upper": null,
              "final_lower": 6000.0,
              "final_upper": null,
              "warn_lower": 7000.0,
              "warn_upper": 308472.0,
              "source": "computed",
              "ml_lower": 6753.85,
              "ml_upper": 308472.0,
              "auto_lower": 6753.85,
              "auto_upper": 308472.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 1000.0,
              "final_lower": null,
              "final_upper": 1000.0,
              "warn_lower": 43.0,
              "warn_upper": 910.0,
              "source": "computed",
              "ml_lower": 43.0,
              "ml_upper": 996.3,
              "auto_lower": 43.0,
              "auto_upper": 996.3000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 27316.55,
              "warn_upper": 456848.0,
              "source": "computed",
              "ml_lower": 27316.55,
              "ml_upper": 456848.0,
              "auto_lower": 27316.55,
              "auto_upper": 456848.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 216,
            "refseq_count": 8,
            "final_count": 216,
            "filtered_out_count": 0,
            "pass_count": 197,
            "warn_count": 26,
            "fail_count": 16
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Chlamydia_trachomatis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1000000.0,
              "upper": 1300000.0,
              "final_lower": 1000000.0,
              "final_upper": 1300000.0,
              "warn_lower": 1000000.0,
              "warn_upper": 1200000.0,
              "source": "computed",
              "ml_lower": 1020151.88,
              "ml_upper": 1275137.8,
              "auto_lower": 1020151.88,
              "auto_upper": 1275137.7999999998,
              "refseq_lower": 1033299.65,
              "refseq_upper": 1083861.635
            },
            {
              "metric": "GC_Content",
              "lower": 41.13,
              "upper": 42.11,
              "final_lower": 41.13,
              "final_upper": 42.11,
              "warn_lower": 41.17,
              "warn_upper": 41.91,
              "source": "computed",
              "ml_lower": 41.1378,
              "ml_upper": 42.1003,
              "auto_lower": 41.137819,
              "auto_upper": 42.10031,
              "refseq_lower": 41.251746499999996,
              "refseq_upper": 41.5182225
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 900.0,
              "upper": 1200.0,
              "final_lower": 900.0,
              "final_upper": 1200.0,
              "warn_lower": 900.0,
              "warn_upper": 1100.0,
              "source": "computed",
              "ml_lower": 904.0,
              "ml_upper": 1139.62,
              "auto_lower": 904.0,
              "auto_upper": 1139.62,
              "refseq_lower": 936.845,
              "refseq_upper": 982.385
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 94.0,
              "warn_upper": 99.93,
              "source": "computed",
              "ml_lower": 90.15,
              "ml_upper": 99.93,
              "auto_lower": 90.1518,
              "auto_upper": 99.93,
              "refseq_lower": 92.94455,
              "refseq_upper": 99.02
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 7.15,
              "auto_lower": 0.05190000000000001,
              "auto_upper": 1.5523999999999978,
              "refseq_lower": 1.73,
              "refseq_upper": 7.15
            },
            {
              "metric": "N50",
              "lower": 6000.0,
              "upper": null,
              "final_lower": 6000.0,
              "final_upper": null,
              "warn_lower": 11000.0,
              "warn_upper": 1048739.4,
              "source": "computed",
              "ml_lower": 6763.53,
              "ml_upper": 1048739.4,
              "auto_lower": 6763.53,
              "auto_upper": 1048739.4,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 310.0,
              "final_lower": null,
              "final_upper": 310.0,
              "warn_lower": 2.0,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 2.0,
              "ml_upper": 304.81,
              "auto_lower": 2.0,
              "auto_upper": 304.80999999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 26964.48,
              "warn_upper": 1048739.4,
              "source": "computed",
              "ml_lower": 26964.48,
              "ml_upper": 1048739.4,
              "auto_lower": 26964.48,
              "auto_upper": 1048739.4,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1039,
            "refseq_count": 124,
            "final_count": 1039,
            "filtered_out_count": 0,
            "pass_count": 932,
            "warn_count": 103,
            "fail_count": 140
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "frac_incomplete",
                  "flag": "warn",
                  "fraction": 0.0279,
                  "count": 29,
                  "n": 1039,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Citrobacter_amalonaticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5900000.0,
              "final_lower": 4600000.0,
              "final_upper": 5900000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4689886.01,
              "ml_upper": 5875351.0,
              "auto_lower": 4689886.01,
              "auto_upper": 5511708.7,
              "refseq_lower": 4762953.08,
              "refseq_upper": 5836134.76
            },
            {
              "metric": "GC_Content",
              "lower": 52.89,
              "upper": 53.89,
              "final_lower": 52.89,
              "final_upper": 53.89,
              "warn_lower": 52.94,
              "warn_upper": 53.89,
              "source": "computed",
              "ml_lower": 52.8963,
              "ml_upper": 53.885,
              "auto_lower": 52.896319,
              "auto_upper": 53.884997999999996,
              "refseq_lower": 53.115327,
              "refseq_upper": 53.712689999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 5700.0,
              "final_lower": 4300.0,
              "final_upper": 5700.0,
              "warn_lower": 4400.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 4365.08,
              "ml_upper": 5658.0,
              "auto_lower": 4365.08,
              "auto_upper": 5355.81,
              "refseq_lower": 4542.35,
              "refseq_upper": 5627.2
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.42,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.4312,
              "refseq_upper": 99.2423
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.84,
              "auto_lower": 0.0,
              "auto_upper": 0.6685000000000014,
              "refseq_lower": 2.3234999999999997,
              "refseq_upper": 3.7958999999999996
            },
            {
              "metric": "N50",
              "lower": 65000.0,
              "upper": null,
              "final_lower": 65000.0,
              "final_upper": null,
              "warn_lower": 97000.0,
              "warn_upper": 874116.9,
              "source": "computed",
              "ml_lower": 65606.44,
              "ml_upper": 874116.9,
              "auto_lower": 65606.44,
              "auto_upper": 874116.9,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 270.0,
              "final_lower": null,
              "final_upper": 270.0,
              "warn_lower": 27.02,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 27.02,
              "ml_upper": 266.41,
              "auto_lower": 27.02,
              "auto_upper": 266.41000000000054,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 188113.09,
              "warn_upper": 2400246.93,
              "source": "computed",
              "ml_lower": 188113.09,
              "ml_upper": 2400246.93,
              "auto_lower": 188113.09,
              "auto_upper": 2400246.93,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 203,
            "refseq_count": 15,
            "final_count": 203,
            "filtered_out_count": 0,
            "pass_count": 186,
            "warn_count": 26,
            "fail_count": 7
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Citrobacter_braakii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 6200000.0,
              "final_lower": 4700000.0,
              "final_upper": 6200000.0,
              "warn_lower": 4800000.0,
              "warn_upper": 5800000.0,
              "source": "computed",
              "ml_lower": 4773279.85,
              "ml_upper": 6171839.0,
              "auto_lower": 4773279.85,
              "auto_upper": 5834668.200000002,
              "refseq_lower": 4821418.01,
              "refseq_upper": 6134817.289999999
            },
            {
              "metric": "GC_Content",
              "lower": 51.13,
              "upper": 52.26,
              "final_lower": 51.13,
              "final_upper": 52.26,
              "warn_lower": 51.68,
              "warn_upper": 52.24,
              "source": "computed",
              "ml_lower": 51.138,
              "ml_upper": 52.2516,
              "auto_lower": 51.634805,
              "auto_upper": 52.251615,
              "refseq_lower": 51.226558499999996,
              "refseq_upper": 52.243747500000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 6200.0,
              "final_lower": 4400.0,
              "final_upper": 6200.0,
              "warn_lower": 4400.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 4436.25,
              "ml_upper": 6161.0,
              "auto_lower": 4436.25,
              "auto_upper": 5761.4000000000015,
              "refseq_lower": 4576.815,
              "refseq_upper": 6135.415
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.75,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.79514999999999,
              "refseq_upper": 99.83
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.04,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 5.62,
              "auto_lower": 0.04,
              "auto_upper": 1.4975000000000012,
              "refseq_lower": 1.8058,
              "refseq_upper": 5.5684
            },
            {
              "metric": "N50",
              "lower": 77000.0,
              "upper": null,
              "final_lower": 77000.0,
              "final_upper": null,
              "warn_lower": 85000.0,
              "warn_upper": 999411.45,
              "source": "computed",
              "ml_lower": 77052.75,
              "ml_upper": 999411.45,
              "auto_lower": 77052.75,
              "auto_upper": 999411.4500000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 280.0,
              "final_lower": null,
              "final_upper": 280.0,
              "warn_lower": 25.65,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 25.65,
              "ml_upper": 271.6,
              "auto_lower": 25.65,
              "auto_upper": 271.60000000000036,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 215144.25,
              "warn_upper": 2255340.9,
              "source": "computed",
              "ml_lower": 215144.25,
              "ml_upper": 2255340.9,
              "auto_lower": 215144.25,
              "auto_upper": 2255340.9000000022,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 331,
            "refseq_count": 44,
            "final_count": 331,
            "filtered_out_count": 0,
            "pass_count": 309,
            "warn_count": 28,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Citrobacter_farmeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6000000.0,
              "final_lower": 4900000.0,
              "final_upper": 6000000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5900000.0,
              "source": "computed",
              "ml_lower": 4928830.2,
              "ml_upper": 5952118.0,
              "auto_lower": 4928830.2,
              "auto_upper": 5952117.995,
              "refseq_lower": 4964996.29,
              "refseq_upper": 5710994.63
            },
            {
              "metric": "GC_Content",
              "lower": 52.49,
              "upper": 53.41,
              "final_lower": 52.49,
              "final_upper": 53.41,
              "warn_lower": 52.66,
              "warn_upper": 53.33,
              "source": "computed",
              "ml_lower": 52.4964,
              "ml_upper": 53.4012,
              "auto_lower": 52.496393,
              "auto_upper": 53.397115,
              "refseq_lower": 52.797751500000004,
              "refseq_upper": 53.397427500000006
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 5900.0,
              "final_lower": 4500.0,
              "final_upper": 5900.0,
              "warn_lower": 4600.0,
              "warn_upper": 5900.0,
              "source": "computed",
              "ml_lower": 4548.29,
              "ml_upper": 5894.2,
              "auto_lower": 4548.29,
              "auto_upper": 5894.204999999999,
              "refseq_lower": 4743.045,
              "refseq_upper": 5604.14
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.36,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.366,
              "refseq_upper": 99.26655
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 5.68,
              "auto_lower": 0.006450000000000001,
              "auto_upper": 1.4906499999999996,
              "refseq_lower": 2.98945,
              "refseq_upper": 5.6647
            },
            {
              "metric": "N50",
              "lower": 54000.0,
              "upper": null,
              "final_lower": 54000.0,
              "final_upper": null,
              "warn_lower": 95000.0,
              "warn_upper": 909898.05,
              "source": "computed",
              "ml_lower": 54012.98,
              "ml_upper": 909898.05,
              "auto_lower": 54012.985,
              "auto_upper": 909898.0549999985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 290.0,
              "final_lower": null,
              "final_upper": 290.0,
              "warn_lower": 24.64,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 24.64,
              "ml_upper": 285.55,
              "auto_lower": 24.645,
              "auto_upper": 285.5499999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 170568.18,
              "warn_upper": 2501589.76,
              "source": "computed",
              "ml_lower": 170568.18,
              "ml_upper": 2501589.76,
              "auto_lower": 170568.18,
              "auto_upper": 2501589.7649999997,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 130,
            "refseq_count": 4,
            "final_count": 130,
            "filtered_out_count": 0,
            "pass_count": 116,
            "warn_count": 15,
            "fail_count": 7
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Citrobacter_freundii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4800000.0,
              "upper": 6100000.0,
              "final_lower": 4800000.0,
              "final_upper": 6100000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5800000.0,
              "source": "computed",
              "ml_lower": 4809559.0,
              "ml_upper": 6062955.0,
              "auto_lower": 4837813.44,
              "auto_upper": 5879250.6049999995,
              "refseq_lower": 4874414.05,
              "refseq_upper": 6043141.05
            },
            {
              "metric": "GC_Content",
              "lower": 51.2,
              "upper": 52.05,
              "final_lower": 51.2,
              "final_upper": 52.05,
              "warn_lower": 51.39,
              "warn_upper": 51.98,
              "source": "computed",
              "ml_lower": 51.2081,
              "ml_upper": 52.0479,
              "auto_lower": 51.314041499999995,
              "auto_upper": 52.043929999999996,
              "refseq_lower": 51.2700125,
              "refseq_upper": 52.020405000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 6200.0,
              "final_lower": 4500.0,
              "final_upper": 6200.0,
              "warn_lower": 4600.0,
              "warn_upper": 5800.0,
              "source": "computed",
              "ml_lower": 4514.0,
              "ml_upper": 6110.0,
              "auto_lower": 4514.0,
              "auto_upper": 5839.0,
              "refseq_lower": 4660.2,
              "refseq_upper": 6056.375
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.06824999999999,
              "refseq_upper": 99.32
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 11.0,
              "final_lower": null,
              "final_upper": 11.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 10.02,
              "auto_lower": 0.01,
              "auto_upper": 1.5442999999999985,
              "refseq_lower": 0.71,
              "refseq_upper": 10.0005
            },
            {
              "metric": "N50",
              "lower": 58000.0,
              "upper": null,
              "final_lower": 58000.0,
              "final_upper": null,
              "warn_lower": 81000.0,
              "warn_upper": 730637.26,
              "source": "computed",
              "ml_lower": 58755.26,
              "ml_upper": 730637.26,
              "auto_lower": 58755.26,
              "auto_upper": 730637.2599999983,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 320.0,
              "final_lower": null,
              "final_upper": 320.0,
              "warn_lower": 36.28,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 36.28,
              "ml_upper": 318.72,
              "auto_lower": 36.285,
              "auto_upper": 318.71999999999935,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 187442.96,
              "warn_upper": 1622426.52,
              "source": "computed",
              "ml_lower": 187442.96,
              "ml_upper": 1622426.52,
              "auto_lower": 187442.96,
              "auto_upper": 1622426.5199999993,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2058,
            "refseq_count": 196,
            "final_count": 2058,
            "filtered_out_count": 0,
            "pass_count": 1859,
            "warn_count": 251,
            "fail_count": 88
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Citrobacter_koseri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5300000.0,
              "final_lower": 4500000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5000000.0,
              "source": "computed",
              "ml_lower": 4538294.0,
              "ml_upper": 5270494.0,
              "auto_lower": 4538294.0,
              "auto_upper": 5082498.125,
              "refseq_lower": 4581003.975,
              "refseq_upper": 5245077.7
            },
            {
              "metric": "GC_Content",
              "lower": 53.23,
              "upper": 53.98,
              "final_lower": 53.23,
              "final_upper": 53.98,
              "warn_lower": 53.51,
              "warn_upper": 53.94,
              "source": "computed",
              "ml_lower": 53.2365,
              "ml_upper": 53.9702,
              "auto_lower": 53.384625,
              "auto_upper": 53.970237499999996,
              "refseq_lower": 53.2536675,
              "refseq_upper": 53.933234999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5200.0,
              "final_lower": 4100.0,
              "final_upper": 5200.0,
              "warn_lower": 4100.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 4170.75,
              "ml_upper": 5119.0,
              "auto_lower": 4170.75,
              "auto_upper": 4799.875,
              "refseq_lower": 4321.175,
              "refseq_upper": 5106.225
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.13925,
              "refseq_upper": 99.86
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.47,
              "auto_lower": 0.0,
              "auto_upper": 0.56,
              "refseq_lower": 0.094,
              "refseq_upper": 1.4612500000000002
            },
            {
              "metric": "N50",
              "lower": 80000.0,
              "upper": null,
              "final_lower": 80000.0,
              "final_upper": null,
              "warn_lower": 135000.0,
              "warn_upper": 2039393.25,
              "source": "computed",
              "ml_lower": 80914.75,
              "ml_upper": 2039393.25,
              "auto_lower": 80914.75,
              "auto_upper": 2039393.25,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 23.0,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 23.0,
              "ml_upper": 172.75,
              "auto_lower": 23.0,
              "auto_upper": 172.75,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 265980.75,
              "warn_upper": 2447942.62,
              "source": "computed",
              "ml_lower": 265980.75,
              "ml_upper": 2447942.62,
              "auto_lower": 265980.75,
              "auto_upper": 2447942.625,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 276,
            "refseq_count": 36,
            "final_count": 276,
            "filtered_out_count": 0,
            "pass_count": 266,
            "warn_count": 38,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Citrobacter_portucalensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5800000.0,
              "final_lower": 4600000.0,
              "final_upper": 5800000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5600000.0,
              "source": "computed",
              "ml_lower": 4694654.0,
              "ml_upper": 5779133.0,
              "auto_lower": 4728667.44,
              "auto_upper": 5716285.239999999,
              "refseq_lower": 4731355.28,
              "refseq_upper": 5762174.24
            },
            {
              "metric": "GC_Content",
              "lower": 51.34,
              "upper": 52.12,
              "final_lower": 51.34,
              "final_upper": 52.12,
              "warn_lower": 51.54,
              "warn_upper": 52.1,
              "source": "computed",
              "ml_lower": 51.3472,
              "ml_upper": 52.1132,
              "auto_lower": 51.45986,
              "auto_upper": 52.113224,
              "refseq_lower": 51.361844000000005,
              "refseq_upper": 52.101756
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 5700.0,
              "final_lower": 4300.0,
              "final_upper": 5700.0,
              "warn_lower": 4400.0,
              "warn_upper": 5500.0,
              "source": "computed",
              "ml_lower": 4366.52,
              "ml_upper": 5669.0,
              "auto_lower": 4366.52,
              "auto_upper": 5608.36,
              "refseq_lower": 4524.92,
              "refseq_upper": 5663.68
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.46,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.8156,
              "refseq_upper": 99.882
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 3.72,
              "auto_lower": 0.01,
              "auto_upper": 1.1067999999999985,
              "refseq_lower": 0.18,
              "refseq_upper": 3.6835999999999998
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 74000.0,
              "warn_upper": 1024522.72,
              "source": "computed",
              "ml_lower": 59764.56,
              "ml_upper": 1024522.72,
              "auto_lower": 59764.56,
              "auto_upper": 1024522.7199999992,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 360.0,
              "final_lower": null,
              "final_upper": 360.0,
              "warn_lower": 28.0,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 28.0,
              "ml_upper": 355.2,
              "auto_lower": 28.0,
              "auto_upper": 355.1999999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 176413.6,
              "warn_upper": 1981392.36,
              "source": "computed",
              "ml_lower": 176413.6,
              "ml_upper": 1981392.36,
              "auto_lower": 176413.6,
              "auto_upper": 1981392.3599999987,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 409,
            "refseq_count": 57,
            "final_count": 409,
            "filtered_out_count": 0,
            "pass_count": 377,
            "warn_count": 39,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Citrobacter_rodentium": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5100000.0,
              "upper": 5500000.0,
              "final_lower": 5100000.0,
              "final_upper": 5500000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 5300000.0,
              "source": "computed",
              "ml_lower": 5188342.28,
              "ml_upper": 5444283.0,
              "auto_lower": 5188342.28,
              "auto_upper": 5288842.32,
              "refseq_lower": 5347170.1,
              "refseq_upper": 5443651.54
            },
            {
              "metric": "GC_Content",
              "lower": 54.53,
              "upper": 54.73,
              "final_lower": 54.53,
              "final_upper": 54.73,
              "warn_lower": 54.54,
              "warn_upper": 54.66,
              "source": "computed",
              "ml_lower": 54.5338,
              "ml_upper": 54.7221,
              "auto_lower": 54.533812,
              "auto_upper": 54.691272,
              "refseq_lower": 54.551170000000006,
              "refseq_upper": 54.721153
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 5300.0,
              "final_lower": 4900.0,
              "final_upper": 5300.0,
              "warn_lower": 4900.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 4910.28,
              "ml_upper": 5227.0,
              "auto_lower": 4910.28,
              "auto_upper": 5040.72,
              "refseq_lower": 5115.69,
              "refseq_upper": 5226.57
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.04,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.04010000000001,
              "refseq_upper": 99.3668
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.21,
              "auto_lower": 0.01,
              "auto_upper": 0.02,
              "refseq_lower": 0.21,
              "refseq_upper": 0.21
            },
            {
              "metric": "N50",
              "lower": 58000.0,
              "upper": null,
              "final_lower": 58000.0,
              "final_upper": null,
              "warn_lower": 75000.0,
              "warn_upper": 95115.0,
              "source": "computed",
              "ml_lower": 58268.44,
              "ml_upper": 95115.0,
              "auto_lower": 58268.44,
              "auto_upper": 95115.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 250.0,
              "final_lower": null,
              "final_upper": 250.0,
              "warn_lower": 176.28,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 176.28,
              "ml_upper": 248.2,
              "auto_lower": 176.28,
              "auto_upper": 248.2,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 236691.4,
              "warn_upper": 287296.0,
              "source": "computed",
              "ml_lower": 236691.4,
              "ml_upper": 287296.0,
              "auto_lower": 236691.4,
              "auto_upper": 287296.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 257,
            "refseq_count": 3,
            "final_count": 257,
            "filtered_out_count": 0,
            "pass_count": 235,
            "warn_count": 18,
            "fail_count": 57
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Citrobacter_sedlakii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5200000.0,
              "final_lower": 4500000.0,
              "final_upper": 5200000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4501994.11,
              "ml_upper": 5159942.6,
              "auto_lower": 4501994.11,
              "auto_upper": 5159942.595,
              "refseq_lower": 4967243.0,
              "refseq_upper": 4967243.0
            },
            {
              "metric": "GC_Content",
              "lower": 54.17,
              "upper": 54.86,
              "final_lower": 54.17,
              "final_upper": 54.86,
              "warn_lower": 54.25,
              "warn_upper": 54.84,
              "source": "computed",
              "ml_lower": 54.1792,
              "ml_upper": 54.8548,
              "auto_lower": 54.1791775,
              "auto_upper": 54.854801,
              "refseq_lower": 54.347,
              "refseq_upper": 54.347
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5100.0,
              "final_lower": 4100.0,
              "final_upper": 5100.0,
              "warn_lower": 4100.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 4128.48,
              "ml_upper": 5026.6,
              "auto_lower": 4128.475,
              "auto_upper": 5026.605,
              "refseq_lower": 4771.0,
              "refseq_upper": 4771.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.81,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.81,
              "refseq_upper": 98.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.44,
              "auto_lower": 0.0,
              "auto_upper": 0.10039999999999964,
              "refseq_lower": 1.44,
              "refseq_upper": 1.44
            },
            {
              "metric": "N50",
              "lower": 196000.0,
              "upper": null,
              "final_lower": 196000.0,
              "final_upper": null,
              "warn_lower": 214000.0,
              "warn_upper": 1037991.99,
              "source": "computed",
              "ml_lower": 196643.33,
              "ml_upper": 1037991.99,
              "auto_lower": 196643.33,
              "auto_upper": 1037991.9899999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 29.46,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 29.46,
              "ml_upper": 148.08,
              "auto_lower": 29.465,
              "auto_upper": 148.07999999999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 477121.36,
              "warn_upper": 1722480.91,
              "source": "computed",
              "ml_lower": 477121.36,
              "ml_upper": 1722480.91,
              "auto_lower": 477121.365,
              "auto_upper": 1722480.91,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 100,
            "refseq_count": 1,
            "final_count": 100,
            "filtered_out_count": 0,
            "pass_count": 96,
            "warn_count": 9,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Citrobacter_werkmanii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 6000000.0,
              "final_lower": 4700000.0,
              "final_upper": 6000000.0,
              "warn_lower": 4800000.0,
              "warn_upper": 6000000.0,
              "source": "computed",
              "ml_lower": 4780187.62,
              "ml_upper": 5947354.36,
              "auto_lower": 4780187.62,
              "auto_upper": 5947354.36,
              "refseq_lower": 5049685.44,
              "refseq_upper": 5361170.07
            },
            {
              "metric": "GC_Content",
              "lower": 51.73,
              "upper": 52.3,
              "final_lower": 51.73,
              "final_upper": 52.3,
              "warn_lower": 51.8,
              "warn_upper": 52.25,
              "source": "computed",
              "ml_lower": 51.7333,
              "ml_upper": 52.2947,
              "auto_lower": 51.73327,
              "auto_upper": 52.294738,
              "refseq_lower": 51.811592000000005,
              "refseq_upper": 52.251788
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 6000.0,
              "final_lower": 4400.0,
              "final_upper": 6000.0,
              "warn_lower": 4400.0,
              "warn_upper": 5900.0,
              "source": "computed",
              "ml_lower": 4421.06,
              "ml_upper": 5915.56,
              "auto_lower": 4421.06,
              "auto_upper": 5915.56,
              "refseq_lower": 4808.72,
              "refseq_upper": 5246.08
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.17,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.1772,
              "refseq_upper": 99.7661
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 4.09,
              "auto_lower": 0.05,
              "auto_upper": 1.3878,
              "refseq_lower": 1.8348,
              "refseq_upper": 4.0702
            },
            {
              "metric": "N50",
              "lower": 50000.0,
              "upper": null,
              "final_lower": 50000.0,
              "final_upper": null,
              "warn_lower": 107000.0,
              "warn_upper": 2706074.22,
              "source": "computed",
              "ml_lower": 50612.24,
              "ml_upper": 2706074.22,
              "auto_lower": 50612.24,
              "auto_upper": 2706074.22,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 300.0,
              "final_lower": null,
              "final_upper": 300.0,
              "warn_lower": 25.0,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 25.0,
              "ml_upper": 294.06,
              "auto_lower": 25.0,
              "auto_upper": 294.06000000000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 241020.9,
              "warn_upper": 2706074.22,
              "source": "computed",
              "ml_lower": 241020.9,
              "ml_upper": 2706074.22,
              "auto_lower": 241020.9,
              "auto_upper": 2706074.22,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 245,
            "refseq_count": 7,
            "final_count": 245,
            "filtered_out_count": 0,
            "pass_count": 224,
            "warn_count": 22,
            "fail_count": 16
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Citrobacter_youngae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 6100000.0,
              "final_lower": 4600000.0,
              "final_upper": 6100000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4607053.21,
              "ml_upper": 6000265.0,
              "auto_lower": 4607053.21,
              "auto_upper": 5642295.06,
              "refseq_lower": 4870944.62,
              "refseq_upper": 5993831.65
            },
            {
              "metric": "GC_Content",
              "lower": 51.16,
              "upper": 51.97,
              "final_lower": 51.16,
              "final_upper": 51.97,
              "warn_lower": 51.4,
              "warn_upper": 51.93,
              "source": "computed",
              "ml_lower": 51.1635,
              "ml_upper": 51.9654,
              "auto_lower": 51.3855075,
              "auto_upper": 51.965388499999996,
              "refseq_lower": 51.169356,
              "refseq_upper": 51.796211
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4200.0,
              "upper": 6100.0,
              "final_lower": 4200.0,
              "final_upper": 6100.0,
              "warn_lower": 4300.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 4293.5,
              "ml_upper": 6032.0,
              "auto_lower": 4293.495,
              "auto_upper": 5559.315,
              "refseq_lower": 4772.33,
              "refseq_upper": 6023.075
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.09425,
              "refseq_upper": 99.3694
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 2.93,
              "auto_lower": 0.04685,
              "auto_upper": 0.7657499999999999,
              "refseq_lower": 1.3461500000000002,
              "refseq_upper": 2.9216
            },
            {
              "metric": "N50",
              "lower": 122000.0,
              "upper": null,
              "final_lower": 122000.0,
              "final_upper": null,
              "warn_lower": 136000.0,
              "warn_upper": 1115083.0,
              "source": "computed",
              "ml_lower": 122490.7,
              "ml_upper": 1115083.0,
              "auto_lower": 122490.695,
              "auto_upper": 1115083.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 30.42,
              "warn_upper": 210.0,
              "source": "computed",
              "ml_lower": 30.42,
              "ml_upper": 220.26,
              "auto_lower": 30.425,
              "auto_upper": 220.26,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 336110.5,
              "warn_upper": 1893594.33,
              "source": "computed",
              "ml_lower": 336110.5,
              "ml_upper": 1893594.33,
              "auto_lower": 336110.5,
              "auto_upper": 1893594.3299999996,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 138,
            "refseq_count": 4,
            "final_count": 138,
            "filtered_out_count": 0,
            "pass_count": 137,
            "warn_count": 16,
            "fail_count": 5
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Clostridium_beijerinckii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5500000.0,
              "upper": 6500000.0,
              "final_lower": 5500000.0,
              "final_upper": 6500000.0,
              "warn_lower": 5900000.0,
              "warn_upper": 6200000.0,
              "source": "computed",
              "ml_lower": 5552291.0,
              "ml_upper": 6485394.0,
              "auto_lower": 5891143.915,
              "auto_upper": 6194038.18,
              "refseq_lower": 5565528.4,
              "refseq_upper": 6484101.225
            },
            {
              "metric": "GC_Content",
              "lower": 29.6,
              "upper": 30.01,
              "final_lower": 29.6,
              "final_upper": 30.01,
              "warn_lower": 29.61,
              "warn_upper": 29.71,
              "source": "computed",
              "ml_lower": 29.6059,
              "ml_upper": 30.0022,
              "auto_lower": 29.605929,
              "auto_upper": 29.7444715,
              "refseq_lower": 29.7892855,
              "refseq_upper": 29.9968045
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 5900.0,
              "final_lower": 4900.0,
              "final_upper": 5900.0,
              "warn_lower": 5300.0,
              "warn_upper": 5700.0,
              "source": "computed",
              "ml_lower": 4986.0,
              "ml_upper": 5896.0,
              "auto_lower": 5271.295,
              "auto_upper": 5655.505,
              "refseq_lower": 4999.53,
              "refseq_upper": 5892.7
            },
            {
              "metric": "Completeness_Specific",
              "lower": 88.0,
              "upper": null,
              "final_lower": 88.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 88.17,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 88.21455,
              "refseq_upper": 97.26
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.21,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.21,
              "ml_upper": 8.99,
              "auto_lower": 0.21495,
              "auto_upper": 1.42505,
              "refseq_lower": 2.68,
              "refseq_upper": 8.93445
            },
            {
              "metric": "N50",
              "lower": 92000.0,
              "upper": null,
              "final_lower": 92000.0,
              "final_upper": null,
              "warn_lower": 101000.0,
              "warn_upper": 205240.56,
              "source": "computed",
              "ml_lower": 92060.97,
              "ml_upper": 205240.56,
              "auto_lower": 92060.97,
              "auto_upper": 205240.5649999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 290.0,
              "final_lower": null,
              "final_upper": 290.0,
              "warn_lower": 120.4,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 120.4,
              "ml_upper": 281.1,
              "auto_lower": 120.405,
              "auto_upper": 281.0999999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 304052.0,
              "warn_upper": 754722.0,
              "source": "computed",
              "ml_lower": 304052.0,
              "ml_upper": 754722.0,
              "auto_lower": 304052.0,
              "auto_upper": 754722.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 100,
            "refseq_count": 12,
            "final_count": 100,
            "filtered_out_count": 0,
            "pass_count": 92,
            "warn_count": 19,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Clostridium_botulinum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2700000.0,
              "upper": 4500000.0,
              "final_lower": 2700000.0,
              "final_upper": 4500000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 4400000.0,
              "source": "computed",
              "ml_lower": 2702994.0,
              "ml_upper": 4432564.0,
              "auto_lower": 3572778.855,
              "auto_upper": 4342791.06,
              "refseq_lower": 2852900.985,
              "refseq_upper": 4426278.79
            },
            {
              "metric": "GC_Content",
              "lower": 27.0,
              "upper": 28.35,
              "final_lower": 27.0,
              "final_upper": 28.35,
              "warn_lower": 27.06,
              "warn_upper": 28.19,
              "source": "computed",
              "ml_lower": 27.0034,
              "ml_upper": 28.3435,
              "auto_lower": 27.0033785,
              "auto_upper": 28.277482,
              "refseq_lower": 27.353734499999998,
              "refseq_upper": 28.330459
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 4400.0,
              "final_lower": 2600.0,
              "final_upper": 4400.0,
              "warn_lower": 3300.0,
              "warn_upper": 4200.0,
              "source": "computed",
              "ml_lower": 2683.0,
              "ml_upper": 4385.0,
              "auto_lower": 3202.0,
              "auto_upper": 4245.65,
              "refseq_lower": 2805.13,
              "refseq_upper": 4373.615
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.54,
              "ml_upper": 100.0,
              "auto_lower": 99.96634999999999,
              "auto_upper": 100.0,
              "refseq_lower": 94.80565,
              "refseq_upper": 99.97585000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.08,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.08,
              "ml_upper": 2.86,
              "auto_lower": 0.08,
              "auto_upper": 2.5074500000000013,
              "refseq_lower": 0.17,
              "refseq_upper": 2.6709999999999976
            },
            {
              "metric": "N50",
              "lower": 11000.0,
              "upper": null,
              "final_lower": 11000.0,
              "final_upper": null,
              "warn_lower": 18000.0,
              "warn_upper": 968504.0,
              "source": "computed",
              "ml_lower": 11751.84,
              "ml_upper": 968504.0,
              "auto_lower": 11751.845,
              "auto_upper": 968504.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 600.0,
              "final_lower": null,
              "final_upper": 600.0,
              "warn_lower": 32.64,
              "warn_upper": 420.0,
              "source": "computed",
              "ml_lower": 32.64,
              "ml_upper": 597.94,
              "auto_lower": 32.635,
              "auto_upper": 597.9350000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 57195.74,
              "warn_upper": 1832008.74,
              "source": "computed",
              "ml_lower": 57195.74,
              "ml_upper": 1832008.74,
              "auto_lower": 57195.735,
              "auto_upper": 1832008.7400000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 928,
            "refseq_count": 70,
            "final_count": 928,
            "filtered_out_count": 0,
            "pass_count": 884,
            "warn_count": 109,
            "fail_count": 32
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Clostridium_cagae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4100000.0,
              "final_lower": 3600000.0,
              "final_upper": 4100000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 4100000.0,
              "source": "computed",
              "ml_lower": 3688085.69,
              "ml_upper": 4048570.19,
              "auto_lower": 3688085.69,
              "auto_upper": 4048570.19,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 27.11,
              "upper": 27.34,
              "final_lower": 27.11,
              "final_upper": 27.34,
              "warn_lower": 27.13,
              "warn_upper": 27.31,
              "source": "computed",
              "ml_lower": 27.11,
              "ml_upper": 27.34,
              "auto_lower": 27.114492000000002,
              "auto_upper": 27.336828,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3300.0,
              "upper": 4000.0,
              "final_lower": 3300.0,
              "final_upper": 4000.0,
              "warn_lower": 3300.0,
              "warn_upper": 3900.0,
              "source": "computed",
              "ml_lower": 3307.35,
              "ml_upper": 3924.43,
              "auto_lower": 3307.35,
              "auto_upper": 3924.43,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.96,
              "ml_upper": 100.0,
              "auto_lower": 99.96,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.48,
              "auto_lower": 0.0047,
              "auto_upper": 0.48360000000000014,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 26000.0,
              "upper": null,
              "final_lower": 26000.0,
              "final_upper": null,
              "warn_lower": 40000.0,
              "warn_upper": 869079.83,
              "source": "computed",
              "ml_lower": 26482.69,
              "ml_upper": 869079.83,
              "auto_lower": 26482.690000000002,
              "auto_upper": 869079.83,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 300.0,
              "final_lower": null,
              "final_upper": 300.0,
              "warn_lower": 30.94,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 30.94,
              "ml_upper": 299.01,
              "auto_lower": 30.94,
              "auto_upper": 299.0100000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 98089.29,
              "warn_upper": 1570393.98,
              "source": "computed",
              "ml_lower": 98089.29,
              "ml_upper": 1570393.98,
              "auto_lower": 98089.29000000001,
              "auto_upper": 1570393.9800000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 95,
            "refseq_count": 0,
            "final_count": 95,
            "filtered_out_count": 0,
            "pass_count": 85,
            "warn_count": 10,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Clostridium_difficile": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3800000.0,
              "upper": 4600000.0,
              "final_lower": 3800000.0,
              "final_upper": 4600000.0,
              "warn_lower": 3900000.0,
              "warn_upper": 4500000.0,
              "source": "computed",
              "ml_lower": 3866334.79,
              "ml_upper": 4508706.07,
              "auto_lower": 3866334.79,
              "auto_upper": 4508706.07,
              "refseq_lower": 3939257.62,
              "refseq_upper": 4461088.63
            },
            {
              "metric": "GC_Content",
              "lower": 28.15,
              "upper": 29.6,
              "final_lower": 28.15,
              "final_upper": 29.6,
              "warn_lower": 28.22,
              "warn_upper": 28.98,
              "source": "computed",
              "ml_lower": 28.1587,
              "ml_upper": 29.5958,
              "auto_lower": 28.158703,
              "auto_upper": 29.244843000000003,
              "refseq_lower": 28.321638,
              "refseq_upper": 29.282952
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4300.0,
              "final_lower": 3400.0,
              "final_upper": 4300.0,
              "warn_lower": 3500.0,
              "warn_upper": 4200.0,
              "source": "computed",
              "ml_lower": 3488.0,
              "ml_upper": 4277.0,
              "auto_lower": 3488.0,
              "auto_upper": 4277.0,
              "refseq_lower": 3606.1,
              "refseq_upper": 4189.01
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.72,
              "ml_upper": 100.0,
              "auto_lower": 99.6803,
              "auto_upper": 100.0,
              "refseq_lower": 94.77,
              "refseq_upper": 98.96
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.11,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.11,
              "ml_upper": 3.08,
              "auto_lower": 0.11,
              "auto_upper": 1.33,
              "refseq_lower": 0.3,
              "refseq_upper": 2.3448999999999978
            },
            {
              "metric": "N50",
              "lower": 10000.0,
              "upper": null,
              "final_lower": 10000.0,
              "final_upper": null,
              "warn_lower": 16000.0,
              "warn_upper": 645926.49,
              "source": "computed",
              "ml_lower": 10201.0,
              "ml_upper": 645926.49,
              "auto_lower": 10201.0,
              "auto_upper": 645926.49,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 720.0,
              "final_lower": null,
              "final_upper": 720.0,
              "warn_lower": 50.0,
              "warn_upper": 510.0,
              "source": "computed",
              "ml_lower": 50.0,
              "ml_upper": 717.97,
              "auto_lower": 50.0,
              "auto_upper": 717.9700000000012,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 52285.73,
              "warn_upper": 1351357.21,
              "source": "computed",
              "ml_lower": 52285.73,
              "ml_upper": 1351357.21,
              "auto_lower": 52285.73,
              "auto_upper": 1351357.2100000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 27207,
            "refseq_count": 243,
            "final_count": 27207,
            "filtered_out_count": 0,
            "pass_count": 25033,
            "warn_count": 2814,
            "fail_count": 1375
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Clostridium_innocuum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4000000.0,
              "upper": 5100000.0,
              "final_lower": 4000000.0,
              "final_upper": 5100000.0,
              "warn_lower": 4000000.0,
              "warn_upper": 4900000.0,
              "source": "computed",
              "ml_lower": 4057677.38,
              "ml_upper": 5051129.0,
              "auto_lower": 4057677.375,
              "auto_upper": 4923964.125,
              "refseq_lower": 4125997.55,
              "refseq_upper": 5044391.649999999
            },
            {
              "metric": "GC_Content",
              "lower": 43.17,
              "upper": 44.33,
              "final_lower": 43.17,
              "final_upper": 44.33,
              "warn_lower": 43.21,
              "warn_upper": 44.18,
              "source": "computed",
              "ml_lower": 43.1712,
              "ml_upper": 44.3261,
              "auto_lower": 43.17115,
              "auto_upper": 44.326074999999996,
              "refseq_lower": 43.48098,
              "refseq_upper": 43.923832499999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 5100.0,
              "final_lower": 3900.0,
              "final_upper": 5100.0,
              "warn_lower": 3900.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 3941.0,
              "ml_upper": 5040.38,
              "auto_lower": 3941.0,
              "auto_upper": 5040.375,
              "refseq_lower": 4010.9,
              "refseq_upper": 4946.25
            },
            {
              "metric": "Completeness_Specific",
              "lower": 87.0,
              "upper": null,
              "final_lower": 87.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 87.92,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 87.92,
              "refseq_upper": 87.92
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 1.88,
              "warn_upper": 5.0,
              "source": "computed",
              "ml_lower": 1.88,
              "ml_upper": 5.01,
              "auto_lower": 1.88,
              "auto_upper": 5.01,
              "refseq_lower": 2.8,
              "refseq_upper": 4.64325
            },
            {
              "metric": "N50",
              "lower": 80000.0,
              "upper": null,
              "final_lower": 80000.0,
              "final_upper": null,
              "warn_lower": 88000.0,
              "warn_upper": 302310.75,
              "source": "computed",
              "ml_lower": 80067.25,
              "ml_upper": 302310.75,
              "auto_lower": 80067.25,
              "auto_upper": 302310.75,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 310.0,
              "final_lower": null,
              "final_upper": 310.0,
              "warn_lower": 58.5,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 58.5,
              "ml_upper": 309.5,
              "auto_lower": 58.5,
              "auto_upper": 309.5,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 182518.0,
              "warn_upper": 614242.5,
              "source": "computed",
              "ml_lower": 182518.0,
              "ml_upper": 614242.5,
              "auto_lower": 182518.0,
              "auto_upper": 614242.5,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 176,
            "refseq_count": 6,
            "final_count": 176,
            "filtered_out_count": 0,
            "pass_count": 167,
            "warn_count": 23,
            "fail_count": 16
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Clostridium_tetani": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2700000.0,
              "upper": 3100000.0,
              "final_lower": 2700000.0,
              "final_upper": 3100000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3000000.0,
              "source": "computed",
              "ml_lower": 2738177.2,
              "ml_upper": 3070777.0,
              "auto_lower": 2738177.195,
              "auto_upper": 2923260.385,
              "refseq_lower": 2811843.04,
              "refseq_upper": 3062587.07
            },
            {
              "metric": "GC_Content",
              "lower": 28.45,
              "upper": 28.79,
              "final_lower": 28.45,
              "final_upper": 28.79,
              "warn_lower": 28.47,
              "warn_upper": 28.6,
              "source": "computed",
              "ml_lower": 28.4593,
              "ml_upper": 28.7851,
              "auto_lower": 28.459266,
              "auto_upper": 28.611539,
              "refseq_lower": 28.537363,
              "refseq_upper": 28.784358
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 3200.0,
              "final_lower": 2600.0,
              "final_upper": 3200.0,
              "warn_lower": 2600.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2604.66,
              "ml_upper": 3157.0,
              "auto_lower": 2604.66,
              "auto_upper": 2873.9449999999997,
              "refseq_lower": 2777.12,
              "refseq_upper": 3142.72
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.08,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 97.1542,
              "refseq_upper": 99.38
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.78,
              "auto_lower": 0.0,
              "auto_upper": 0.10389999999999987,
              "refseq_lower": 0.16,
              "refseq_upper": 0.78
            },
            {
              "metric": "N50",
              "lower": 95000.0,
              "upper": null,
              "final_lower": 95000.0,
              "final_upper": null,
              "warn_lower": 121000.0,
              "warn_upper": 557250.58,
              "source": "computed",
              "ml_lower": 95470.48,
              "ml_upper": 557250.58,
              "auto_lower": 95470.475,
              "auto_upper": 557250.579999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 28.42,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 28.42,
              "ml_upper": 103.36,
              "auto_lower": 28.415,
              "auto_upper": 103.36499999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 251135.2,
              "warn_upper": 1258236.01,
              "source": "computed",
              "ml_lower": 251135.2,
              "ml_upper": 1258236.01,
              "auto_lower": 251135.2,
              "auto_upper": 1258236.015,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 162,
            "refseq_count": 15,
            "final_count": 162,
            "filtered_out_count": 0,
            "pass_count": 156,
            "warn_count": 19,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Corynebacterium_diphtheriae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2300000.0,
              "upper": 2600000.0,
              "final_lower": 2300000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2300000.0,
              "warn_upper": 2600000.0,
              "source": "computed",
              "ml_lower": 2335628.5,
              "ml_upper": 2571916.15,
              "auto_lower": 2335628.5,
              "auto_upper": 2571916.15,
              "refseq_lower": 2374145.24,
              "refseq_upper": 2562311.56
            },
            {
              "metric": "GC_Content",
              "lower": 53.31,
              "upper": 53.76,
              "final_lower": 53.31,
              "final_upper": 53.76,
              "warn_lower": 53.37,
              "warn_upper": 53.71,
              "source": "computed",
              "ml_lower": 53.3162,
              "ml_upper": 53.756,
              "auto_lower": 53.3563025,
              "auto_upper": 53.755989500000005,
              "refseq_lower": 53.346608,
              "refseq_upper": 53.736472
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 2600.0,
              "final_lower": 2100.0,
              "final_upper": 2600.0,
              "warn_lower": 2200.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 2188.0,
              "ml_upper": 2535.19,
              "auto_lower": 2188.0,
              "auto_upper": 2535.1949999999997,
              "refseq_lower": 2270.52,
              "refseq_upper": 2485.36
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.89,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 95.99080000000001,
              "refseq_upper": 98.5904
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.1,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.1,
              "ml_upper": 1.69,
              "auto_lower": 0.1,
              "auto_upper": 1.69,
              "refseq_lower": 0.1,
              "refseq_upper": 0.30439999999999995
            },
            {
              "metric": "N50",
              "lower": 63000.0,
              "upper": null,
              "final_lower": 63000.0,
              "final_upper": null,
              "warn_lower": 76000.0,
              "warn_upper": 403084.0,
              "source": "computed",
              "ml_lower": 63816.18,
              "ml_upper": 403084.0,
              "auto_lower": 63816.175,
              "auto_upper": 403084.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 25.8,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 25.8,
              "ml_upper": 100.0,
              "auto_lower": 25.805,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 160334.11,
              "warn_upper": 550459.92,
              "source": "computed",
              "ml_lower": 160334.11,
              "ml_upper": 550459.92,
              "auto_lower": 160334.105,
              "auto_upper": 550459.915,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1762,
            "refseq_count": 57,
            "final_count": 1762,
            "filtered_out_count": 0,
            "pass_count": 1640,
            "warn_count": 216,
            "fail_count": 121
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Corynebacterium_glutamicum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2800000.0,
              "upper": 3500000.0,
              "final_lower": 2800000.0,
              "final_upper": 3500000.0,
              "warn_lower": 3200000.0,
              "warn_upper": 3400000.0,
              "source": "computed",
              "ml_lower": 2843369.0,
              "ml_upper": 3428365.0,
              "auto_lower": 3232209.0,
              "auto_upper": 3324041.065,
              "refseq_lower": 2877783.92,
              "refseq_upper": 3426589.48
            },
            {
              "metric": "GC_Content",
              "lower": 53.73,
              "upper": 54.3,
              "final_lower": 53.73,
              "final_upper": 54.3,
              "warn_lower": 53.8,
              "warn_upper": 53.93,
              "source": "computed",
              "ml_lower": 53.7391,
              "ml_upper": 54.2941,
              "auto_lower": 53.7772155,
              "auto_upper": 53.9261685,
              "refseq_lower": 53.750494,
              "refseq_upper": 54.293938
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 3300.0,
              "final_lower": 2600.0,
              "final_upper": 3300.0,
              "warn_lower": 3000.0,
              "warn_upper": 3200.0,
              "source": "computed",
              "ml_lower": 2654.0,
              "ml_upper": 3229.0,
              "auto_lower": 3020.385,
              "auto_upper": 3114.46,
              "refseq_lower": 2683.7,
              "refseq_upper": 3225.4
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.14,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 91.9248,
              "refseq_upper": 98.69
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 3.57,
              "auto_lower": 0.07385,
              "auto_upper": 0.46,
              "refseq_lower": 0.02,
              "refseq_upper": 3.5280000000000005
            },
            {
              "metric": "N50",
              "lower": 102000.0,
              "upper": null,
              "final_lower": 102000.0,
              "final_upper": null,
              "warn_lower": 113000.0,
              "warn_upper": 285134.0,
              "source": "computed",
              "ml_lower": 102770.0,
              "ml_upper": 285134.0,
              "auto_lower": 102770.0,
              "auto_upper": 285134.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 46.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 46.0,
              "ml_upper": 99.23,
              "auto_lower": 46.0,
              "auto_upper": 99.23000000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 305739.02,
              "warn_upper": 544324.62,
              "source": "computed",
              "ml_lower": 305739.02,
              "ml_upper": 544324.62,
              "auto_lower": 305739.015,
              "auto_upper": 544324.615,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 278,
            "refseq_count": 37,
            "final_count": 278,
            "filtered_out_count": 0,
            "pass_count": 281,
            "warn_count": 20,
            "fail_count": 4
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Corynebacterium_jeikeium": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 2600000.0,
              "final_lower": 2200000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2235510.14,
              "ml_upper": 2524840.0,
              "auto_lower": 2235510.14,
              "auto_upper": 2454602.14,
              "refseq_lower": 2415270.73,
              "refseq_upper": 2524359.82
            },
            {
              "metric": "GC_Content",
              "lower": 61.35,
              "upper": 62.63,
              "final_lower": 61.35,
              "final_upper": 62.63,
              "warn_lower": 61.53,
              "warn_upper": 62.6,
              "source": "computed",
              "ml_lower": 61.3514,
              "ml_upper": 62.6242,
              "auto_lower": 61.523193,
              "auto_upper": 62.624212,
              "refseq_lower": 61.352131,
              "refseq_upper": 61.745458
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2300.0,
              "final_lower": 1900.0,
              "final_upper": 2300.0,
              "warn_lower": 1900.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1957.63,
              "ml_upper": 2269.0,
              "auto_lower": 1957.63,
              "auto_upper": 2199.58,
              "refseq_lower": 2126.69,
              "refseq_upper": 2268.26
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.93,
              "ml_upper": 100.0,
              "auto_lower": 99.88210000000001,
              "auto_upper": 100.0,
              "refseq_lower": 95.9568,
              "refseq_upper": 98.61
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.15,
              "auto_lower": 0.0,
              "auto_upper": 1.8053999999999981,
              "refseq_lower": 0.888,
              "refseq_upper": 2.1452999999999998
            },
            {
              "metric": "N50",
              "lower": 77000.0,
              "upper": null,
              "final_lower": 77000.0,
              "final_upper": null,
              "warn_lower": 82000.0,
              "warn_upper": 311352.56,
              "source": "computed",
              "ml_lower": 77121.88,
              "ml_upper": 311352.56,
              "auto_lower": 77121.88,
              "auto_upper": 311352.5649999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 31.24,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 31.24,
              "ml_upper": 120.13,
              "auto_lower": 31.235,
              "auto_upper": 120.13499999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 179665.74,
              "warn_upper": 679250.11,
              "source": "computed",
              "ml_lower": 179665.74,
              "ml_upper": 679250.11,
              "auto_lower": 179665.745,
              "auto_upper": 679250.1149999996,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 122,
            "refseq_count": 3,
            "final_count": 122,
            "filtered_out_count": 0,
            "pass_count": 118,
            "warn_count": 9,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Corynebacterium_pseudodiphtheriticum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 2500000.0,
              "final_lower": 2200000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2260388.0,
              "ml_upper": 2457991.5,
              "auto_lower": 2260388.0,
              "auto_upper": 2457991.5,
              "refseq_lower": 2305345.3,
              "refseq_upper": 2401914.96
            },
            {
              "metric": "GC_Content",
              "lower": 55.13,
              "upper": 55.43,
              "final_lower": 55.13,
              "final_upper": 55.43,
              "warn_lower": 55.15,
              "warn_upper": 55.38,
              "source": "computed",
              "ml_lower": 55.1324,
              "ml_upper": 55.4244,
              "auto_lower": 55.1324,
              "auto_upper": 55.424350000000004,
              "refseq_lower": 55.258522,
              "refseq_upper": 55.380548
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2300.0,
              "final_lower": 2000.0,
              "final_upper": 2300.0,
              "warn_lower": 2000.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 2040.0,
              "ml_upper": 2285.0,
              "auto_lower": 2040.0,
              "auto_upper": 2285.0,
              "refseq_lower": 2091.4,
              "refseq_upper": 2173.58
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.66,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.6638,
              "refseq_upper": 98.85
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.66,
              "auto_lower": 0.0,
              "auto_upper": 0.66,
              "refseq_lower": 0.052250000000000005,
              "refseq_upper": 0.49775
            },
            {
              "metric": "N50",
              "lower": 105000.0,
              "upper": null,
              "final_lower": 105000.0,
              "final_upper": null,
              "warn_lower": 127000.0,
              "warn_upper": 571703.0,
              "source": "computed",
              "ml_lower": 105960.5,
              "ml_upper": 571703.0,
              "auto_lower": 105960.5,
              "auto_upper": 571703.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 60.0,
              "final_lower": null,
              "final_upper": 60.0,
              "warn_lower": 13.0,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 13.0,
              "ml_upper": 58.0,
              "auto_lower": 13.0,
              "auto_upper": 58.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 267454.5,
              "warn_upper": 1090594.0,
              "source": "computed",
              "ml_lower": 267454.5,
              "ml_upper": 1090594.0,
              "auto_lower": 267454.5,
              "auto_upper": 1090594.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 101,
            "refseq_count": 5,
            "final_count": 101,
            "filtered_out_count": 0,
            "pass_count": 94,
            "warn_count": 4,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Corynebacterium_striatum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 3100000.0,
              "final_lower": 2600000.0,
              "final_upper": 3100000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3100000.0,
              "source": "computed",
              "ml_lower": 2665682.0,
              "ml_upper": 3076875.85,
              "auto_lower": 2692383.6,
              "auto_upper": 3076875.85,
              "refseq_lower": 2668982.25,
              "refseq_upper": 3030819.65
            },
            {
              "metric": "GC_Content",
              "lower": 58.98,
              "upper": 59.45,
              "final_lower": 58.98,
              "final_upper": 59.45,
              "warn_lower": 59.05,
              "warn_upper": 59.38,
              "source": "computed",
              "ml_lower": 58.9847,
              "ml_upper": 59.4456,
              "auto_lower": 58.984707500000006,
              "auto_upper": 59.403977499999996,
              "refseq_lower": 59.0173425,
              "refseq_upper": 59.443104999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2400.0,
              "upper": 3200.0,
              "final_lower": 2400.0,
              "final_upper": 3200.0,
              "warn_lower": 2500.0,
              "warn_upper": 3100.0,
              "source": "computed",
              "ml_lower": 2489.0,
              "ml_upper": 3110.18,
              "auto_lower": 2551.075,
              "auto_upper": 3110.175,
              "refseq_lower": 2493.65,
              "refseq_upper": 2882.025
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.59,
              "ml_upper": 100.0,
              "auto_lower": 98.59225,
              "auto_upper": 100.0,
              "refseq_lower": 99.08049999999999,
              "refseq_upper": 99.9
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.02,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 2.61,
              "auto_lower": 0.02,
              "auto_upper": 2.61,
              "refseq_lower": 0.07150000000000001,
              "refseq_upper": 0.8709999999999998
            },
            {
              "metric": "N50",
              "lower": 62000.0,
              "upper": null,
              "final_lower": 62000.0,
              "final_upper": null,
              "warn_lower": 73000.0,
              "warn_upper": 190542.52,
              "source": "computed",
              "ml_lower": 62982.3,
              "ml_upper": 190542.52,
              "auto_lower": 62982.3,
              "auto_upper": 190542.525,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 290.0,
              "final_lower": null,
              "final_upper": 290.0,
              "warn_lower": 89.48,
              "warn_upper": 270.0,
              "source": "computed",
              "ml_lower": 89.48,
              "ml_upper": 288.18,
              "auto_lower": 89.475,
              "auto_upper": 288.175,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 161773.62,
              "warn_upper": 408120.13,
              "source": "computed",
              "ml_lower": 161773.62,
              "ml_upper": 408120.13,
              "auto_lower": 161773.625,
              "auto_upper": 408120.1250000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 366,
            "refseq_count": 6,
            "final_count": 366,
            "filtered_out_count": 0,
            "pass_count": 335,
            "warn_count": 38,
            "fail_count": 26
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Corynebacterium_ulcerans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 2700000.0,
              "final_lower": 2400000.0,
              "final_upper": 2700000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2422103.8,
              "ml_upper": 2640733.12,
              "auto_lower": 2422103.8,
              "auto_upper": 2640733.12,
              "refseq_lower": 2434916.23,
              "refseq_upper": 2602839.82
            },
            {
              "metric": "GC_Content",
              "lower": 53.2,
              "upper": 53.46,
              "final_lower": 53.2,
              "final_upper": 53.46,
              "warn_lower": 53.25,
              "warn_upper": 53.45,
              "source": "computed",
              "ml_lower": 53.2032,
              "ml_upper": 53.4568,
              "auto_lower": 53.232791999999996,
              "auto_upper": 53.456808,
              "refseq_lower": 53.205514,
              "refseq_upper": 53.419275
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 2500.0,
              "final_lower": 2100.0,
              "final_upper": 2500.0,
              "warn_lower": 2100.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 2181.76,
              "ml_upper": 2481.48,
              "auto_lower": 2181.76,
              "auto_upper": 2481.48,
              "refseq_lower": 2194.04,
              "refseq_upper": 2406.76
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 93.87,
              "ml_upper": 99.99,
              "auto_lower": 99.98,
              "auto_upper": 99.99,
              "refseq_lower": 93.8934,
              "refseq_upper": 98.2509
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.23,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.23,
              "ml_upper": 0.92,
              "auto_lower": 0.2336,
              "auto_upper": 0.9239999999999986,
              "refseq_lower": 0.26,
              "refseq_upper": 0.84
            },
            {
              "metric": "N50",
              "lower": 139000.0,
              "upper": null,
              "final_lower": 139000.0,
              "final_upper": null,
              "warn_lower": 155000.0,
              "warn_upper": 578404.92,
              "source": "computed",
              "ml_lower": 139324.88,
              "ml_upper": 578404.92,
              "auto_lower": 139324.88,
              "auto_upper": 578404.9199999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 40.0,
              "final_lower": null,
              "final_upper": 40.0,
              "warn_lower": 8.68,
              "warn_upper": 40.0,
              "source": "computed",
              "ml_lower": 8.68,
              "ml_upper": 39.8,
              "auto_lower": 8.68,
              "auto_upper": 39.7999999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 269070.88,
              "warn_upper": 866970.96,
              "source": "computed",
              "ml_lower": 269070.88,
              "ml_upper": 866970.96,
              "auto_lower": 269070.88,
              "auto_upper": 866970.96,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 137,
            "refseq_count": 27,
            "final_count": 137,
            "filtered_out_count": 0,
            "pass_count": 132,
            "warn_count": 10,
            "fail_count": 19
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Cronobacter_sakazakii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 5000000.0,
              "final_lower": 4200000.0,
              "final_upper": 5000000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 4700000.0,
              "source": "computed",
              "ml_lower": 4268675.0,
              "ml_upper": 4908057.0,
              "auto_lower": 4316019.725,
              "auto_upper": 4775052.12,
              "refseq_lower": 4275214.12,
              "refseq_upper": 4901935.08
            },
            {
              "metric": "GC_Content",
              "lower": 56.29,
              "upper": 57.13,
              "final_lower": 56.29,
              "final_upper": 57.13,
              "warn_lower": 56.53,
              "warn_upper": 57.07,
              "source": "computed",
              "ml_lower": 56.2956,
              "ml_upper": 57.1227,
              "auto_lower": 56.4602115,
              "auto_upper": 57.1227,
              "refseq_lower": 56.321836,
              "refseq_upper": 57.097165999999994
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4800.0,
              "final_lower": 3900.0,
              "final_upper": 4800.0,
              "warn_lower": 3900.0,
              "warn_upper": 4500.0,
              "source": "computed",
              "ml_lower": 3926.27,
              "ml_upper": 4714.0,
              "auto_lower": 3926.27,
              "auto_upper": 4463.0,
              "refseq_lower": 4032.84,
              "refseq_upper": 4712.18
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.92,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.9676,
              "refseq_upper": 99.03659999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.3,
              "auto_lower": 0.0,
              "auto_upper": 0.69,
              "refseq_lower": 0.1476,
              "refseq_upper": 3.2523999999999997
            },
            {
              "metric": "N50",
              "lower": 92000.0,
              "upper": null,
              "final_lower": 92000.0,
              "final_upper": null,
              "warn_lower": 102000.0,
              "warn_upper": 1056424.0,
              "source": "computed",
              "ml_lower": 92807.72,
              "ml_upper": 1056424.0,
              "auto_lower": 92807.715,
              "auto_upper": 1056424.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 140.0,
              "final_lower": null,
              "final_upper": 140.0,
              "warn_lower": 25.0,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 25.0,
              "ml_upper": 138.36,
              "auto_lower": 25.0,
              "auto_upper": 138.365,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 271581.79,
              "warn_upper": 2094942.44,
              "source": "computed",
              "ml_lower": 271581.79,
              "ml_upper": 2094942.44,
              "auto_lower": 271581.79,
              "auto_upper": 2094942.4350000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1528,
            "refseq_count": 29,
            "final_count": 1528,
            "filtered_out_count": 0,
            "pass_count": 1466,
            "warn_count": 214,
            "fail_count": 38
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Cronobacter_turicensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 4900000.0,
              "final_lower": 4300000.0,
              "final_upper": 4900000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 4800000.0,
              "source": "computed",
              "ml_lower": 4392205.48,
              "ml_upper": 4808084.73,
              "auto_lower": 4392205.48,
              "auto_upper": 4808084.73,
              "refseq_lower": 4498051.14,
              "refseq_upper": 4669280.22
            },
            {
              "metric": "GC_Content",
              "lower": 56.95,
              "upper": 57.66,
              "final_lower": 56.95,
              "final_upper": 57.66,
              "warn_lower": 57.01,
              "warn_upper": 57.66,
              "source": "computed",
              "ml_lower": 56.9576,
              "ml_upper": 57.6562,
              "auto_lower": 56.957569,
              "auto_upper": 57.656249,
              "refseq_lower": 57.144960000000005,
              "refseq_upper": 57.581744
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4500.0,
              "final_lower": 3900.0,
              "final_upper": 4500.0,
              "warn_lower": 3900.0,
              "warn_upper": 4500.0,
              "source": "computed",
              "ml_lower": 3975.51,
              "ml_upper": 4462.45,
              "auto_lower": 3975.51,
              "auto_upper": 4462.45,
              "refseq_lower": 4197.68,
              "refseq_upper": 4435.7
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.33,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.3308,
              "refseq_upper": 99.00760000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.48,
              "auto_lower": 0.0,
              "auto_upper": 0.5822999999999986,
              "refseq_lower": 0.273,
              "refseq_upper": 1.4782
            },
            {
              "metric": "N50",
              "lower": 194000.0,
              "upper": null,
              "final_lower": 194000.0,
              "final_upper": null,
              "warn_lower": 217000.0,
              "warn_upper": 1126184.92,
              "source": "computed",
              "ml_lower": 194054.35,
              "ml_upper": 1126184.92,
              "auto_lower": 194054.35,
              "auto_upper": 1126184.9199999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 18.51,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 18.51,
              "ml_upper": 102.43,
              "auto_lower": 18.51,
              "auto_upper": 102.42999999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 477272.07,
              "warn_upper": 1920476.22,
              "source": "computed",
              "ml_lower": 477272.07,
              "ml_upper": 1920476.22,
              "auto_lower": 477272.07,
              "auto_upper": 1920476.2199999997,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 103,
            "refseq_count": 5,
            "final_count": 103,
            "filtered_out_count": 0,
            "pass_count": 100,
            "warn_count": 8,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Curtobacterium_flaccumfaciens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4000000.0,
              "final_lower": 3600000.0,
              "final_upper": 4000000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 3800000.0,
              "source": "computed",
              "ml_lower": 3602627.62,
              "ml_upper": 3970624.0,
              "auto_lower": 3602627.62,
              "auto_upper": 3851579.62,
              "refseq_lower": 3674466.12,
              "refseq_upper": 3967477.2399999998
            },
            {
              "metric": "GC_Content",
              "lower": 70.36,
              "upper": 71.17,
              "final_lower": 70.36,
              "final_upper": 71.17,
              "warn_lower": 70.86,
              "warn_upper": 71.09,
              "source": "computed",
              "ml_lower": 70.3678,
              "ml_upper": 71.1668,
              "auto_lower": 70.803969,
              "auto_upper": 71.16683499999999,
              "refseq_lower": 70.392628,
              "refseq_upper": 71.07432
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 3900.0,
              "final_lower": 3400.0,
              "final_upper": 3900.0,
              "warn_lower": 3400.0,
              "warn_upper": 3700.0,
              "source": "computed",
              "ml_lower": 3404.22,
              "ml_upper": 3815.0,
              "auto_lower": 3404.22,
              "auto_upper": 3685.34,
              "refseq_lower": 3512.56,
              "refseq_upper": 3810.8
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.8,
              "ml_upper": 100.0,
              "auto_lower": 99.9,
              "auto_upper": 100.0,
              "refseq_lower": 89.8108,
              "refseq_upper": 93.97160000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.04,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 9.47,
              "auto_lower": 0.0444,
              "auto_upper": 0.899,
              "refseq_lower": 5.204,
              "refseq_upper": 9.3896
            },
            {
              "metric": "N50",
              "lower": 38000.0,
              "upper": null,
              "final_lower": 38000.0,
              "final_upper": null,
              "warn_lower": 56000.0,
              "warn_upper": 479035.39,
              "source": "computed",
              "ml_lower": 38483.9,
              "ml_upper": 479035.39,
              "auto_lower": 38483.9,
              "auto_upper": 479035.39,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 19.83,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 19.83,
              "ml_upper": 202.24,
              "auto_lower": 19.83,
              "auto_upper": 202.24,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 159190.4,
              "warn_upper": 921923.74,
              "source": "computed",
              "ml_lower": 159190.4,
              "ml_upper": 921923.74,
              "auto_lower": 159190.4,
              "auto_upper": 921923.74,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 123,
            "refseq_count": 25,
            "final_count": 123,
            "filtered_out_count": 0,
            "pass_count": 117,
            "warn_count": 9,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Cutibacterium_acnes": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 2700000.0,
              "final_lower": 2400000.0,
              "final_upper": 2700000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2600000.0,
              "source": "computed",
              "ml_lower": 2454010.9,
              "ml_upper": 2661991.57,
              "auto_lower": 2454010.9,
              "auto_upper": 2661991.5749999997,
              "refseq_lower": 2488860.295,
              "refseq_upper": 2560886.32
            },
            {
              "metric": "GC_Content",
              "lower": 59.95,
              "upper": 60.24,
              "final_lower": 59.95,
              "final_upper": 60.24,
              "warn_lower": 59.99,
              "warn_upper": 60.24,
              "source": "computed",
              "ml_lower": 59.9556,
              "ml_upper": 60.2358,
              "auto_lower": 59.955575,
              "auto_upper": 60.235785,
              "refseq_lower": 59.991440499999996,
              "refseq_upper": 60.1609595
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2200.0,
              "upper": 2600.0,
              "final_lower": 2200.0,
              "final_upper": 2600.0,
              "warn_lower": 2300.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 2296.3,
              "ml_upper": 2578.7,
              "auto_lower": 2296.3,
              "auto_upper": 2578.7,
              "refseq_lower": 2406.175,
              "refseq_upper": 2522.59
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.37,
              "ml_upper": 100.0,
              "auto_lower": 98.518,
              "auto_upper": 100.0,
              "refseq_lower": 95.66845,
              "refseq_upper": 97.83765
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.79,
              "auto_lower": 0.01,
              "auto_upper": 1.7862499999999886,
              "refseq_lower": 0.37,
              "refseq_upper": 1.0212500000000002
            },
            {
              "metric": "N50",
              "lower": 19000.0,
              "upper": null,
              "final_lower": 19000.0,
              "final_upper": null,
              "warn_lower": 40000.0,
              "warn_upper": 893449.12,
              "source": "computed",
              "ml_lower": 19709.58,
              "ml_upper": 893449.12,
              "auto_lower": 19709.575,
              "auto_upper": 893449.125,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 240.0,
              "final_lower": null,
              "final_upper": 240.0,
              "warn_lower": 8.0,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 8.0,
              "ml_upper": 231.22,
              "auto_lower": 8.0,
              "auto_upper": 231.22499999999923,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 87156.42,
              "warn_upper": 1009260.08,
              "source": "computed",
              "ml_lower": 87156.42,
              "ml_upper": 1009260.08,
              "auto_lower": 87156.425,
              "auto_upper": 1009260.075,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 916,
            "refseq_count": 48,
            "final_count": 916,
            "filtered_out_count": 0,
            "pass_count": 853,
            "warn_count": 53,
            "fail_count": 71
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Deinococcus_radiodurans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3100000.0,
              "upper": 3400000.0,
              "final_lower": 3100000.0,
              "final_upper": 3400000.0,
              "warn_lower": 3200000.0,
              "warn_upper": 3300000.0,
              "source": "computed",
              "ml_lower": 3193850.0,
              "ml_upper": 3344765.0,
              "auto_lower": 3201471.08,
              "auto_upper": 3266530.52,
              "refseq_lower": 3194259.76,
              "refseq_upper": 3340884.89
            },
            {
              "metric": "GC_Content",
              "lower": 66.48,
              "upper": 66.89,
              "final_lower": 66.48,
              "final_upper": 66.89,
              "warn_lower": 66.53,
              "warn_upper": 66.8,
              "source": "computed",
              "ml_lower": 66.4844,
              "ml_upper": 66.8867,
              "auto_lower": 66.484412,
              "auto_upper": 66.886684,
              "refseq_lower": 66.592147,
              "refseq_upper": 66.6681935
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3000.0,
              "upper": 3500.0,
              "final_lower": 3000.0,
              "final_upper": 3500.0,
              "warn_lower": 3100.0,
              "warn_upper": 3500.0,
              "source": "computed",
              "ml_lower": 3092.44,
              "ml_upper": 3491.32,
              "auto_lower": 3092.44,
              "auto_upper": 3491.32,
              "refseq_lower": 3134.39,
              "refseq_upper": 3302.83
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 95.0,
              "warn_upper": 99.97,
              "source": "computed",
              "ml_lower": 91.55,
              "ml_upper": 99.97,
              "auto_lower": 91.5468,
              "auto_upper": 99.97,
              "refseq_lower": 93.6417,
              "refseq_upper": 98.96895
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.12,
              "auto_lower": 0.007600000000000001,
              "auto_upper": 0.08,
              "refseq_lower": 0.1613,
              "refseq_upper": 1.1050500000000003
            },
            {
              "metric": "N50",
              "lower": 14000.0,
              "upper": null,
              "final_lower": 14000.0,
              "final_upper": null,
              "warn_lower": 15000.0,
              "warn_upper": 155709.0,
              "source": "computed",
              "ml_lower": 14399.88,
              "ml_upper": 155709.0,
              "auto_lower": 14399.88,
              "auto_upper": 155709.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 470.0,
              "final_lower": null,
              "final_upper": 470.0,
              "warn_lower": 61.0,
              "warn_upper": 420.0,
              "source": "computed",
              "ml_lower": 61.0,
              "ml_upper": 465.16,
              "auto_lower": 61.0,
              "auto_upper": 465.1600000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 52916.12,
              "warn_upper": 384750.64,
              "source": "computed",
              "ml_lower": 52916.12,
              "ml_upper": 384750.64,
              "auto_lower": 52916.12,
              "auto_upper": 384750.64,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 153,
            "refseq_count": 14,
            "final_count": 153,
            "filtered_out_count": 0,
            "pass_count": 145,
            "warn_count": 8,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Dichelobacter_nodosus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1200000.0,
              "upper": 1500000.0,
              "final_lower": 1200000.0,
              "final_upper": 1500000.0,
              "warn_lower": 1200000.0,
              "warn_upper": 1500000.0,
              "source": "computed",
              "ml_lower": 1296774.03,
              "ml_upper": 1466660.0,
              "auto_lower": 1296774.035,
              "auto_upper": 1458286.375,
              "refseq_lower": 1317681.08,
              "refseq_upper": 1463332.16
            },
            {
              "metric": "GC_Content",
              "lower": 43.82,
              "upper": 44.42,
              "final_lower": 43.82,
              "final_upper": 44.42,
              "warn_lower": 43.86,
              "warn_upper": 44.4,
              "source": "computed",
              "ml_lower": 43.8275,
              "ml_upper": 44.4118,
              "auto_lower": 43.827453999999996,
              "auto_upper": 44.411792999999996,
              "refseq_lower": 43.967363999999996,
              "refseq_upper": 44.388176
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1200.0,
              "upper": 1500.0,
              "final_lower": 1200.0,
              "final_upper": 1500.0,
              "warn_lower": 1200.0,
              "warn_upper": 1400.0,
              "source": "computed",
              "ml_lower": 1203.49,
              "ml_upper": 1422.0,
              "auto_lower": 1203.49,
              "auto_upper": 1406.7649999999999,
              "refseq_lower": 1262.4,
              "refseq_upper": 1418.4
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.09,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.13640000000001,
              "refseq_upper": 99.14760000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.04,
              "auto_lower": 0.0,
              "auto_upper": 4.043199999999997,
              "refseq_lower": 0.2,
              "refseq_upper": 0.49
            },
            {
              "metric": "N50",
              "lower": 61000.0,
              "upper": null,
              "final_lower": 61000.0,
              "final_upper": null,
              "warn_lower": 72000.0,
              "warn_upper": 381367.66,
              "source": "computed",
              "ml_lower": 61387.58,
              "ml_upper": 381367.66,
              "auto_lower": 61387.575,
              "auto_upper": 381367.65499999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 9.74,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 9.74,
              "ml_upper": 94.26,
              "auto_lower": 9.745,
              "auto_upper": 94.255,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 134099.34,
              "warn_upper": 458717.14,
              "source": "computed",
              "ml_lower": 134099.34,
              "ml_upper": 458717.14,
              "auto_lower": 134099.335,
              "auto_upper": 458717.1399999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 150,
            "refseq_count": 17,
            "final_count": 150,
            "filtered_out_count": 0,
            "pass_count": 131,
            "warn_count": 19,
            "fail_count": 19
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Elizabethkingia_anophelis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3800000.0,
              "upper": 4400000.0,
              "final_lower": 3800000.0,
              "final_upper": 4400000.0,
              "warn_lower": 3800000.0,
              "warn_upper": 4300000.0,
              "source": "computed",
              "ml_lower": 3814988.85,
              "ml_upper": 4369828.0,
              "auto_lower": 3814988.85,
              "auto_upper": 4334993.6,
              "refseq_lower": 3861438.13,
              "refseq_upper": 4339238.949999999
            },
            {
              "metric": "GC_Content",
              "lower": 35.37,
              "upper": 35.98,
              "final_lower": 35.37,
              "final_upper": 35.98,
              "warn_lower": 35.43,
              "warn_upper": 35.78,
              "source": "computed",
              "ml_lower": 35.3727,
              "ml_upper": 35.9704,
              "auto_lower": 35.372699999999995,
              "auto_upper": 35.787275,
              "refseq_lower": 35.3788,
              "refseq_upper": 35.957974
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4200.0,
              "final_lower": 3400.0,
              "final_upper": 4200.0,
              "warn_lower": 3500.0,
              "warn_upper": 4100.0,
              "source": "computed",
              "ml_lower": 3491.55,
              "ml_upper": 4128.85,
              "auto_lower": 3491.55,
              "auto_upper": 4128.85,
              "refseq_lower": 3538.96,
              "refseq_upper": 4068.2999999999997
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.63,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 94.6927,
              "refseq_upper": 98.8972
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.72,
              "auto_lower": 0.0,
              "auto_upper": 0.86,
              "refseq_lower": 0.62,
              "refseq_upper": 5.286799999999994
            },
            {
              "metric": "N50",
              "lower": 116000.0,
              "upper": null,
              "final_lower": 116000.0,
              "final_upper": null,
              "warn_lower": 162000.0,
              "warn_upper": 1035131.0,
              "source": "computed",
              "ml_lower": 116025.55,
              "ml_upper": 1035131.0,
              "auto_lower": 116025.55,
              "auto_upper": 1035131.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 9.65,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 9.65,
              "ml_upper": 96.75,
              "auto_lower": 9.65,
              "auto_upper": 96.75000000000011,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 349275.5,
              "warn_upper": 1556302.3,
              "source": "computed",
              "ml_lower": 349275.5,
              "ml_upper": 1556302.3,
              "auto_lower": 349275.5,
              "auto_upper": 1556302.3000000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 531,
            "refseq_count": 115,
            "final_count": 531,
            "filtered_out_count": 0,
            "pass_count": 500,
            "warn_count": 62,
            "fail_count": 30
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterobacter_asburiae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5700000.0,
              "final_lower": 4400000.0,
              "final_upper": 5700000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4462870.38,
              "ml_upper": 5615356.0,
              "auto_lower": 4462870.375,
              "auto_upper": 5493213.75,
              "refseq_lower": 4519334.4,
              "refseq_upper": 5605065.65
            },
            {
              "metric": "GC_Content",
              "lower": 54.89,
              "upper": 56.2,
              "final_lower": 54.89,
              "final_upper": 56.2,
              "warn_lower": 55.02,
              "warn_upper": 56.1,
              "source": "computed",
              "ml_lower": 54.8988,
              "ml_upper": 56.1974,
              "auto_lower": 54.8988125,
              "auto_upper": 56.197425,
              "refseq_lower": 54.94525,
              "refseq_upper": 56.10828
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5700.0,
              "final_lower": 4100.0,
              "final_upper": 5700.0,
              "warn_lower": 4100.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 4114.88,
              "ml_upper": 5644.0,
              "auto_lower": 4114.875,
              "auto_upper": 5340.875,
              "refseq_lower": 4319.15,
              "refseq_upper": 5640.85
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.4,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.58550000000001,
              "refseq_upper": 99.73949999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.97,
              "auto_lower": 0.0,
              "auto_upper": 1.0825,
              "refseq_lower": 0.03,
              "refseq_upper": 4.140500000000014
            },
            {
              "metric": "N50",
              "lower": 29000.0,
              "upper": null,
              "final_lower": 29000.0,
              "final_upper": null,
              "warn_lower": 72000.0,
              "warn_upper": 887571.12,
              "source": "computed",
              "ml_lower": 29418.75,
              "ml_upper": 887571.12,
              "auto_lower": 29418.75,
              "auto_upper": 887571.125,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 470.0,
              "final_lower": null,
              "final_upper": 470.0,
              "warn_lower": 29.0,
              "warn_upper": 270.0,
              "source": "computed",
              "ml_lower": 29.0,
              "ml_upper": 467.12,
              "auto_lower": 29.0,
              "auto_upper": 467.125,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 111212.88,
              "warn_upper": 2232021.62,
              "source": "computed",
              "ml_lower": 111212.88,
              "ml_upper": 2232021.62,
              "auto_lower": 111212.875,
              "auto_upper": 2232021.625,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 376,
            "refseq_count": 71,
            "final_count": 376,
            "filtered_out_count": 0,
            "pass_count": 364,
            "warn_count": 30,
            "fail_count": 23
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterobacter_bugandensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5400000.0,
              "final_lower": 4500000.0,
              "final_upper": 5400000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5300000.0,
              "source": "computed",
              "ml_lower": 4573549.51,
              "ml_upper": 5348661.0,
              "auto_lower": 4573549.51,
              "auto_upper": 5283804.99,
              "refseq_lower": 4644060.68,
              "refseq_upper": 5305124.92
            },
            {
              "metric": "GC_Content",
              "lower": 55.42,
              "upper": 56.23,
              "final_lower": 55.42,
              "final_upper": 56.23,
              "warn_lower": 55.44,
              "warn_upper": 56.17,
              "source": "computed",
              "ml_lower": 55.4285,
              "ml_upper": 56.2243,
              "auto_lower": 55.4284715,
              "auto_upper": 56.224319,
              "refseq_lower": 55.43453,
              "refseq_upper": 56.146314000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4200.0,
              "upper": 5200.0,
              "final_lower": 4200.0,
              "final_upper": 5200.0,
              "warn_lower": 4200.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 4219.58,
              "ml_upper": 5175.0,
              "auto_lower": 4219.585,
              "auto_upper": 5110.0,
              "refseq_lower": 4424.62,
              "refseq_upper": 5128.94
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.15,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.15140000000001,
              "refseq_upper": 99.84219999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.88,
              "auto_lower": 0.0,
              "auto_upper": 0.3753999999999996,
              "refseq_lower": 0.03,
              "refseq_upper": 0.8702
            },
            {
              "metric": "N50",
              "lower": 86000.0,
              "upper": null,
              "final_lower": 86000.0,
              "final_upper": null,
              "warn_lower": 125000.0,
              "warn_upper": 1100734.97,
              "source": "computed",
              "ml_lower": 86890.46,
              "ml_upper": 1100734.97,
              "auto_lower": 86890.465,
              "auto_upper": 1100734.9749999985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 29.1,
              "warn_upper": 150.0,
              "source": "computed",
              "ml_lower": 29.1,
              "ml_upper": 177.6,
              "auto_lower": 29.095,
              "auto_upper": 177.6049999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 266575.06,
              "warn_upper": 2264961.22,
              "source": "computed",
              "ml_lower": 266575.06,
              "ml_upper": 2264961.22,
              "auto_lower": 266575.055,
              "auto_upper": 2264961.215,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 274,
            "refseq_count": 29,
            "final_count": 274,
            "filtered_out_count": 0,
            "pass_count": 273,
            "warn_count": 15,
            "fail_count": 21
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterobacter_cloacae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5800000.0,
              "final_lower": 4500000.0,
              "final_upper": 5800000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4557402.0,
              "ml_upper": 5786228.0,
              "auto_lower": 4662594.595,
              "auto_upper": 5656726.755,
              "refseq_lower": 4610352.375,
              "refseq_upper": 5767640.975
            },
            {
              "metric": "GC_Content",
              "lower": 52.92,
              "upper": 56.95,
              "final_lower": 52.92,
              "final_upper": 56.95,
              "warn_lower": 53.17,
              "warn_upper": 55.82,
              "source": "computed",
              "ml_lower": 52.9257,
              "ml_upper": 56.9467,
              "auto_lower": 52.9256605,
              "auto_upper": 56.140032000000005,
              "refseq_lower": 53.2908075,
              "refseq_upper": 56.5214275
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 5900.0,
              "final_lower": 4300.0,
              "final_upper": 5900.0,
              "warn_lower": 4400.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 4310.0,
              "ml_upper": 5859.0,
              "auto_lower": 4341.855,
              "auto_upper": 5579.905,
              "refseq_lower": 4358.15,
              "refseq_upper": 5802.299999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.4,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 90.652,
              "refseq_upper": 99.3455
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.97,
              "auto_lower": 0.0,
              "auto_upper": 1.2971499999999991,
              "refseq_lower": 0.40125,
              "refseq_upper": 3.94975
            },
            {
              "metric": "N50",
              "lower": 41000.0,
              "upper": null,
              "final_lower": 41000.0,
              "final_upper": null,
              "warn_lower": 65000.0,
              "warn_upper": 870199.09,
              "source": "computed",
              "ml_lower": 41721.52,
              "ml_upper": 870199.09,
              "auto_lower": 41721.52,
              "auto_upper": 870199.09,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 410.0,
              "final_lower": null,
              "final_upper": 410.0,
              "warn_lower": 32.0,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 32.0,
              "ml_upper": 408.24,
              "auto_lower": 32.0,
              "auto_upper": 408.2399999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 132319.76,
              "warn_upper": 2184531.47,
              "source": "computed",
              "ml_lower": 132319.76,
              "ml_upper": 2184531.47,
              "auto_lower": 132319.755,
              "auto_upper": 2184531.474999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1220,
            "refseq_count": 46,
            "final_count": 1220,
            "filtered_out_count": 0,
            "pass_count": 1104,
            "warn_count": 127,
            "fail_count": 57
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterobacter_hormaechei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5700000.0,
              "final_lower": 4500000.0,
              "final_upper": 5700000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4514131.0,
              "ml_upper": 5668552.0,
              "auto_lower": 4521965.65,
              "auto_upper": 5408157.0,
              "refseq_lower": 4550116.5,
              "refseq_upper": 5627315.15
            },
            {
              "metric": "GC_Content",
              "lower": 54.28,
              "upper": 55.77,
              "final_lower": 54.28,
              "final_upper": 55.77,
              "warn_lower": 54.58,
              "warn_upper": 55.63,
              "source": "computed",
              "ml_lower": 54.2885,
              "ml_upper": 55.7652,
              "auto_lower": 54.48115,
              "auto_upper": 55.726725,
              "refseq_lower": 54.3438,
              "refseq_upper": 55.707235
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5700.0,
              "final_lower": 4100.0,
              "final_upper": 5700.0,
              "warn_lower": 4200.0,
              "warn_upper": 5200.0,
              "source": "computed",
              "ml_lower": 4189.95,
              "ml_upper": 5690.0,
              "auto_lower": 4189.95,
              "auto_upper": 5252.35,
              "refseq_lower": 4312.25,
              "refseq_upper": 5564.700000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.18,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.2855,
              "refseq_upper": 99.76050000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.3,
              "auto_lower": 0.0,
              "auto_upper": 1.5635000000000037,
              "refseq_lower": 0.03,
              "refseq_upper": 3.1405000000000007
            },
            {
              "metric": "N50",
              "lower": 68000.0,
              "upper": null,
              "final_lower": 68000.0,
              "final_upper": null,
              "warn_lower": 101000.0,
              "warn_upper": 856531.65,
              "source": "computed",
              "ml_lower": 68788.25,
              "ml_upper": 856531.65,
              "auto_lower": 68788.25,
              "auto_upper": 856531.6500000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 260.0,
              "final_lower": null,
              "final_upper": 260.0,
              "warn_lower": 34.0,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 34.0,
              "ml_upper": 252.35,
              "auto_lower": 34.0,
              "auto_upper": 252.35000000000036,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 211446.35,
              "warn_upper": 1943672.7,
              "source": "computed",
              "ml_lower": 211446.35,
              "ml_upper": 1943672.7,
              "auto_lower": 211446.35,
              "auto_upper": 1943672.7000000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 8331,
            "refseq_count": 531,
            "final_count": 8331,
            "filtered_out_count": 0,
            "pass_count": 7675,
            "warn_count": 946,
            "fail_count": 336
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterobacter_kobei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5900000.0,
              "final_lower": 4600000.0,
              "final_upper": 5900000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4612464.24,
              "ml_upper": 5812923.0,
              "auto_lower": 4612464.24,
              "auto_upper": 5527840.92,
              "refseq_lower": 4664040.96,
              "refseq_upper": 5800779.68
            },
            {
              "metric": "GC_Content",
              "lower": 53.84,
              "upper": 55.44,
              "final_lower": 53.84,
              "final_upper": 55.44,
              "warn_lower": 54.26,
              "warn_upper": 55.11,
              "source": "computed",
              "ml_lower": 53.8408,
              "ml_upper": 55.4359,
              "auto_lower": 54.15482,
              "auto_upper": 55.167272000000004,
              "refseq_lower": 53.897164000000004,
              "refseq_upper": 55.3771
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4200.0,
              "upper": 5800.0,
              "final_lower": 4200.0,
              "final_upper": 5800.0,
              "warn_lower": 4300.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 4254.76,
              "ml_upper": 5794.0,
              "auto_lower": 4254.76,
              "auto_upper": 5458.360000000001,
              "refseq_lower": 4405.48,
              "refseq_upper": 5767.96
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.44,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.58,
              "refseq_upper": 99.9044
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.05,
              "auto_lower": 0.03,
              "auto_upper": 1.24,
              "refseq_lower": 0.03,
              "refseq_upper": 1.9715999999999996
            },
            {
              "metric": "N50",
              "lower": 67000.0,
              "upper": null,
              "final_lower": 67000.0,
              "final_upper": null,
              "warn_lower": 79000.0,
              "warn_upper": 663147.12,
              "source": "computed",
              "ml_lower": 67744.56,
              "ml_upper": 663147.12,
              "auto_lower": 67744.56,
              "auto_upper": 663147.1200000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 33.76,
              "warn_upper": 290.0,
              "source": "computed",
              "ml_lower": 33.76,
              "ml_upper": 327.24,
              "auto_lower": 33.76,
              "auto_upper": 327.24,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 199897.16,
              "warn_upper": 1490538.64,
              "source": "computed",
              "ml_lower": 199897.16,
              "ml_upper": 1490538.64,
              "auto_lower": 199897.16,
              "auto_upper": 1490538.64,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 953,
            "refseq_count": 57,
            "final_count": 953,
            "filtered_out_count": 0,
            "pass_count": 877,
            "warn_count": 131,
            "fail_count": 45
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterobacter_ludwigii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5800000.0,
              "final_lower": 4600000.0,
              "final_upper": 5800000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4607358.28,
              "ml_upper": 5711988.0,
              "auto_lower": 4607358.28,
              "auto_upper": 5630561.82,
              "refseq_lower": 4640693.75,
              "refseq_upper": 5632559.5
            },
            {
              "metric": "GC_Content",
              "lower": 53.79,
              "upper": 54.79,
              "final_lower": 53.79,
              "final_upper": 54.79,
              "warn_lower": 53.95,
              "warn_upper": 54.75,
              "source": "computed",
              "ml_lower": 53.7961,
              "ml_upper": 54.7857,
              "auto_lower": 53.920154000000004,
              "auto_upper": 54.785742,
              "refseq_lower": 53.8585,
              "refseq_upper": 54.778775
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 5700.0,
              "final_lower": 4300.0,
              "final_upper": 5700.0,
              "warn_lower": 4300.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 4305.36,
              "ml_upper": 5690.0,
              "auto_lower": 4305.36,
              "auto_upper": 5518.58,
              "refseq_lower": 4428.0,
              "refseq_upper": 5598.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.57,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.78,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.08,
              "auto_lower": 0.0,
              "auto_upper": 0.7121999999999986,
              "refseq_lower": 0.03,
              "refseq_upper": 1.045
            },
            {
              "metric": "N50",
              "lower": 80000.0,
              "upper": null,
              "final_lower": 80000.0,
              "final_upper": null,
              "warn_lower": 150000.0,
              "warn_upper": 1034745.3,
              "source": "computed",
              "ml_lower": 80737.34,
              "ml_upper": 1034745.3,
              "auto_lower": 80737.34,
              "auto_upper": 1034745.2999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 22.0,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 22.0,
              "ml_upper": 195.32,
              "auto_lower": 22.0,
              "auto_upper": 195.31999999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 251924.9,
              "warn_upper": 2395735.32,
              "source": "computed",
              "ml_lower": 251924.9,
              "ml_upper": 2395735.32,
              "auto_lower": 251924.9,
              "auto_upper": 2395735.32,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 285,
            "refseq_count": 51,
            "final_count": 285,
            "filtered_out_count": 0,
            "pass_count": 294,
            "warn_count": 16,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterobacter_roggenkampii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5700000.0,
              "final_lower": 4500000.0,
              "final_upper": 5700000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4578829.54,
              "ml_upper": 5689850.0,
              "auto_lower": 4578829.54,
              "auto_upper": 5622804.09,
              "refseq_lower": 4643075.055,
              "refseq_upper": 5616174.020000001
            },
            {
              "metric": "GC_Content",
              "lower": 55.07,
              "upper": 56.23,
              "final_lower": 55.07,
              "final_upper": 56.23,
              "warn_lower": 55.19,
              "warn_upper": 56.16,
              "source": "computed",
              "ml_lower": 55.0741,
              "ml_upper": 56.2274,
              "auto_lower": 55.074121000000005,
              "auto_upper": 56.227442,
              "refseq_lower": 55.237643,
              "refseq_upper": 56.139258999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5700.0,
              "final_lower": 4100.0,
              "final_upper": 5700.0,
              "warn_lower": 4200.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 4195.01,
              "ml_upper": 5620.0,
              "auto_lower": 4195.01,
              "auto_upper": 5443.84,
              "refseq_lower": 4376.535,
              "refseq_upper": 5547.000000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.78,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.32385,
              "refseq_upper": 99.88
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.39,
              "auto_lower": 0.0,
              "auto_upper": 1.2392000000000007,
              "refseq_lower": 0.03,
              "refseq_upper": 2.3827000000000003
            },
            {
              "metric": "N50",
              "lower": 46000.0,
              "upper": null,
              "final_lower": 46000.0,
              "final_upper": null,
              "warn_lower": 54000.0,
              "warn_upper": 844819.18,
              "source": "computed",
              "ml_lower": 46555.75,
              "ml_upper": 844819.18,
              "auto_lower": 46555.75,
              "auto_upper": 844819.1800000014,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 490.0,
              "final_lower": null,
              "final_upper": 490.0,
              "warn_lower": 34.0,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 34.0,
              "ml_upper": 489.23,
              "auto_lower": 34.0,
              "auto_upper": 489.23000000000184,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 145017.22,
              "warn_upper": 2137495.06,
              "source": "computed",
              "ml_lower": 145017.22,
              "ml_upper": 2137495.06,
              "auto_lower": 145017.22,
              "auto_upper": 2137495.060000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 755,
            "refseq_count": 74,
            "final_count": 755,
            "filtered_out_count": 0,
            "pass_count": 695,
            "warn_count": 93,
            "fail_count": 32
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_avium": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3700000.0,
              "upper": 4900000.0,
              "final_lower": 3700000.0,
              "final_upper": 4900000.0,
              "warn_lower": 4100000.0,
              "warn_upper": 4700000.0,
              "source": "computed",
              "ml_lower": 3723378.0,
              "ml_upper": 4882096.0,
              "auto_lower": 4124917.82,
              "auto_upper": 4610300.81,
              "refseq_lower": 3733851.945,
              "refseq_upper": 4877631.625
            },
            {
              "metric": "GC_Content",
              "lower": 38.52,
              "upper": 39.27,
              "final_lower": 38.52,
              "final_upper": 39.27,
              "warn_lower": 38.78,
              "warn_upper": 39.26,
              "source": "computed",
              "ml_lower": 38.5274,
              "ml_upper": 39.2616,
              "auto_lower": 38.787223,
              "auto_upper": 39.26162,
              "refseq_lower": 38.5332395,
              "refseq_upper": 39.0666125
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3700.0,
              "upper": 4900.0,
              "final_lower": 3700.0,
              "final_upper": 4900.0,
              "warn_lower": 4100.0,
              "warn_upper": 4700.0,
              "source": "computed",
              "ml_lower": 3729.0,
              "ml_upper": 4887.0,
              "auto_lower": 4113.8,
              "auto_upper": 4631.06,
              "refseq_lower": 3738.93,
              "refseq_upper": 4881.24
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.73,
              "ml_upper": 100.0,
              "auto_lower": 99.8249,
              "auto_upper": 100.0,
              "refseq_lower": 93.79375,
              "refseq_upper": 98.37
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 11.0,
              "final_lower": null,
              "final_upper": 11.0,
              "warn_lower": 1.04,
              "warn_upper": 4.0,
              "source": "computed",
              "ml_lower": 1.04,
              "ml_upper": 10.2,
              "auto_lower": 1.0396,
              "auto_upper": 3.6483000000000017,
              "refseq_lower": 7.61495,
              "refseq_upper": 10.1997
            },
            {
              "metric": "N50",
              "lower": 24000.0,
              "upper": null,
              "final_lower": 24000.0,
              "final_upper": null,
              "warn_lower": 30000.0,
              "warn_upper": 115100.5,
              "source": "computed",
              "ml_lower": 24812.4,
              "ml_upper": 115100.5,
              "auto_lower": 24812.4,
              "auto_upper": 115100.50000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 390.0,
              "final_lower": null,
              "final_upper": 390.0,
              "warn_lower": 111.96,
              "warn_upper": 340.0,
              "source": "computed",
              "ml_lower": 111.96,
              "ml_upper": 384.34,
              "auto_lower": 111.96,
              "auto_upper": 384.34000000000015,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90666.19,
              "warn_upper": 324579.51,
              "source": "computed",
              "ml_lower": 90666.19,
              "ml_upper": 324579.51,
              "auto_lower": 90666.19,
              "auto_upper": 324579.51,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 99,
            "refseq_count": 4,
            "final_count": 99,
            "filtered_out_count": 0,
            "pass_count": 94,
            "warn_count": 10,
            "fail_count": 4
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_casseliflavus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3300000.0,
              "upper": 3900000.0,
              "final_lower": 3300000.0,
              "final_upper": 3900000.0,
              "warn_lower": 3300000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3319918.07,
              "ml_upper": 3864310.92,
              "auto_lower": 3319918.07,
              "auto_upper": 3864310.92,
              "refseq_lower": 3342977.05,
              "refseq_upper": 3777978.1
            },
            {
              "metric": "GC_Content",
              "lower": 41.97,
              "upper": 42.92,
              "final_lower": 41.97,
              "final_upper": 42.92,
              "warn_lower": 42.08,
              "warn_upper": 42.89,
              "source": "computed",
              "ml_lower": 41.9797,
              "ml_upper": 42.9153,
              "auto_lower": 42.058172,
              "auto_upper": 42.91535,
              "refseq_lower": 42.000392500000004,
              "refseq_upper": 42.8677325
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3100.0,
              "upper": 3800.0,
              "final_lower": 3100.0,
              "final_upper": 3800.0,
              "warn_lower": 3200.0,
              "warn_upper": 3700.0,
              "source": "computed",
              "ml_lower": 3138.0,
              "ml_upper": 3750.0,
              "auto_lower": 3138.0,
              "auto_upper": 3712.73,
              "refseq_lower": 3189.6,
              "refseq_upper": 3737.925
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.52,
              "ml_upper": 100.0,
              "auto_lower": 99.9606,
              "auto_upper": 100.0,
              "refseq_lower": 95.52225,
              "refseq_upper": 98.756
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 12.0,
              "final_lower": null,
              "final_upper": 12.0,
              "warn_lower": 0.09,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.09,
              "ml_upper": 11.22,
              "auto_lower": 0.09,
              "auto_upper": 1.307,
              "refseq_lower": 1.7855,
              "refseq_upper": 11.077500000000002
            },
            {
              "metric": "N50",
              "lower": 82000.0,
              "upper": null,
              "final_lower": 82000.0,
              "final_upper": null,
              "warn_lower": 91000.0,
              "warn_upper": 560527.11,
              "source": "computed",
              "ml_lower": 82899.68,
              "ml_upper": 560527.11,
              "auto_lower": 82899.68,
              "auto_upper": 560527.11,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 25.65,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 25.65,
              "ml_upper": 142.35,
              "auto_lower": 25.65,
              "auto_upper": 142.35,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 206778.52,
              "warn_upper": 955554.76,
              "source": "computed",
              "ml_lower": 206778.52,
              "ml_upper": 955554.76,
              "auto_lower": 206778.52,
              "auto_upper": 955554.76,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 107,
            "refseq_count": 16,
            "final_count": 107,
            "filtered_out_count": 0,
            "pass_count": 101,
            "warn_count": 12,
            "fail_count": 5
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_cecorum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2800000.0,
              "final_lower": 2000000.0,
              "final_upper": 2800000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2047231.42,
              "ml_upper": 2799887.0,
              "auto_lower": 2047231.42,
              "auto_upper": 2733715.975,
              "refseq_lower": 2243489.55,
              "refseq_upper": 2793545.3000000003
            },
            {
              "metric": "GC_Content",
              "lower": 36.04,
              "upper": 36.77,
              "final_lower": 36.04,
              "final_upper": 36.77,
              "warn_lower": 36.09,
              "warn_upper": 36.68,
              "source": "computed",
              "ml_lower": 36.0436,
              "ml_upper": 36.765,
              "auto_lower": 36.04365,
              "auto_upper": 36.7649565,
              "refseq_lower": 36.168752500000004,
              "refseq_upper": 36.6887275
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2900.0,
              "final_lower": 1900.0,
              "final_upper": 2900.0,
              "warn_lower": 2000.0,
              "warn_upper": 2700.0,
              "source": "computed",
              "ml_lower": 1976.32,
              "ml_upper": 2818.0,
              "auto_lower": 1976.32,
              "auto_upper": 2787.4500000000007,
              "refseq_lower": 2232.7,
              "refseq_upper": 2812.975
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.66,
              "ml_upper": 100.0,
              "auto_lower": 98.86,
              "auto_upper": 99.99835,
              "refseq_lower": 93.678,
              "refseq_upper": 95.85
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.62,
              "auto_lower": 0.0,
              "auto_upper": 0.52,
              "refseq_lower": 0.5637500000000001,
              "refseq_upper": 1.6080000000000003
            },
            {
              "metric": "N50",
              "lower": 49000.0,
              "upper": null,
              "final_lower": 49000.0,
              "final_upper": null,
              "warn_lower": 50000.0,
              "warn_upper": 193590.5,
              "source": "computed",
              "ml_lower": 49283.37,
              "ml_upper": 193590.5,
              "auto_lower": 49283.37,
              "auto_upper": 193590.49500000008,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 38.66,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 38.66,
              "ml_upper": 201.67,
              "auto_lower": 38.66,
              "auto_upper": 201.67000000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 133771.84,
              "warn_upper": 611723.14,
              "source": "computed",
              "ml_lower": 133771.84,
              "ml_upper": 611723.14,
              "auto_lower": 133771.84,
              "auto_upper": 611723.1400000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 234,
            "refseq_count": 16,
            "final_count": 234,
            "filtered_out_count": 0,
            "pass_count": 210,
            "warn_count": 29,
            "fail_count": 25
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_durans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2700000.0,
              "upper": 3300000.0,
              "final_lower": 2700000.0,
              "final_upper": 3300000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3200000.0,
              "source": "computed",
              "ml_lower": 2761224.3,
              "ml_upper": 3213220.65,
              "auto_lower": 2761224.3,
              "auto_upper": 3213220.65,
              "refseq_lower": 2963536.165,
              "refseq_upper": 3136548.525
            },
            {
              "metric": "GC_Content",
              "lower": 37.29,
              "upper": 38.05,
              "final_lower": 37.29,
              "final_upper": 38.05,
              "warn_lower": 37.33,
              "warn_upper": 37.91,
              "source": "computed",
              "ml_lower": 37.299,
              "ml_upper": 38.0401,
              "auto_lower": 37.299005,
              "auto_upper": 37.94248,
              "refseq_lower": 37.879624,
              "refseq_upper": 38.0380045
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 3200.0,
              "final_lower": 2600.0,
              "final_upper": 3200.0,
              "warn_lower": 2600.0,
              "warn_upper": 3000.0,
              "source": "computed",
              "ml_lower": 2623.7,
              "ml_upper": 3101.2,
              "auto_lower": 2623.7,
              "auto_upper": 3101.199999999999,
              "refseq_lower": 2792.495,
              "refseq_upper": 3085.82
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.98,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.98165,
              "refseq_upper": 98.83285000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.02,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 1.39,
              "auto_lower": 0.02,
              "auto_upper": 1.3869999999999958,
              "refseq_lower": 0.17,
              "refseq_upper": 0.36
            },
            {
              "metric": "N50",
              "lower": 34000.0,
              "upper": null,
              "final_lower": 34000.0,
              "final_upper": null,
              "warn_lower": 37000.0,
              "warn_upper": 230403.9,
              "source": "computed",
              "ml_lower": 34926.7,
              "ml_upper": 230403.9,
              "auto_lower": 34926.7,
              "auto_upper": 230403.89999999982,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 40.35,
              "warn_upper": 220.0,
              "source": "computed",
              "ml_lower": 40.35,
              "ml_upper": 222.95,
              "auto_lower": 40.35,
              "auto_upper": 222.94999999999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 92926.65,
              "warn_upper": 514273.35,
              "source": "computed",
              "ml_lower": 92926.65,
              "ml_upper": 514273.35,
              "auto_lower": 92926.65,
              "auto_upper": 514273.3499999985,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 271,
            "refseq_count": 12,
            "final_count": 271,
            "filtered_out_count": 0,
            "pass_count": 258,
            "warn_count": 21,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_faecalis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 3600000.0,
              "final_lower": 2600000.0,
              "final_upper": 3600000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3400000.0,
              "source": "computed",
              "ml_lower": 2642626.0,
              "ml_upper": 3505610.0,
              "auto_lower": 2665433.07,
              "auto_upper": 3394937.0100000002,
              "refseq_lower": 2672915.78,
              "refseq_upper": 3456312.5900000003
            },
            {
              "metric": "GC_Content",
              "lower": 36.89,
              "upper": 37.81,
              "final_lower": 36.89,
              "final_upper": 37.81,
              "warn_lower": 36.98,
              "warn_upper": 37.69,
              "source": "computed",
              "ml_lower": 36.896,
              "ml_upper": 37.8014,
              "auto_lower": 36.896042,
              "auto_upper": 37.7156975,
              "refseq_lower": 37.041826,
              "refseq_upper": 37.782872
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2400.0,
              "upper": 3600.0,
              "final_lower": 2400.0,
              "final_upper": 3600.0,
              "warn_lower": 2500.0,
              "warn_upper": 3400.0,
              "source": "computed",
              "ml_lower": 2468.0,
              "ml_upper": 3586.0,
              "auto_lower": 2468.0,
              "auto_upper": 3457.0,
              "refseq_lower": 2540.35,
              "refseq_upper": 3506.9600000000005
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.95,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 96.15,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.21,
              "auto_lower": 0.03,
              "auto_upper": 0.9139500000000044,
              "refseq_lower": 0.05,
              "refseq_upper": 1.4584000000000004
            },
            {
              "metric": "N50",
              "lower": 51000.0,
              "upper": null,
              "final_lower": 51000.0,
              "final_upper": null,
              "warn_lower": 75000.0,
              "warn_upper": 646124.1,
              "source": "computed",
              "ml_lower": 51907.51,
              "ml_upper": 646124.1,
              "auto_lower": 51907.51,
              "auto_upper": 646124.095,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 220.0,
              "final_lower": null,
              "final_upper": 220.0,
              "warn_lower": 17.0,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 17.0,
              "ml_upper": 211.0,
              "auto_lower": 17.0,
              "auto_upper": 211.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 149303.17,
              "warn_upper": 1217080.84,
              "source": "computed",
              "ml_lower": 149303.17,
              "ml_upper": 1217080.84,
              "auto_lower": 149303.17,
              "auto_upper": 1217080.8400000045,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 9122,
            "refseq_count": 379,
            "final_count": 9122,
            "filtered_out_count": 0,
            "pass_count": 8477,
            "warn_count": 892,
            "fail_count": 316
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_faecium": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 3500000.0,
              "final_lower": 2400000.0,
              "final_upper": 3500000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3200000.0,
              "source": "computed",
              "ml_lower": 2432228.0,
              "ml_upper": 3440588.0,
              "auto_lower": 2621129.915,
              "auto_upper": 3237774.9850000003,
              "refseq_lower": 2490081.43,
              "refseq_upper": 3404576.4499999997
            },
            {
              "metric": "GC_Content",
              "lower": 37.39,
              "upper": 38.56,
              "final_lower": 37.39,
              "final_upper": 38.56,
              "warn_lower": 37.47,
              "warn_upper": 38.0,
              "source": "computed",
              "ml_lower": 37.3948,
              "ml_upper": 38.5528,
              "auto_lower": 37.394830500000005,
              "auto_upper": 38.0911565,
              "refseq_lower": 37.513311,
              "refseq_upper": 38.435784
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2300.0,
              "upper": 3600.0,
              "final_lower": 2300.0,
              "final_upper": 3600.0,
              "warn_lower": 2600.0,
              "warn_upper": 3300.0,
              "source": "computed",
              "ml_lower": 2353.0,
              "ml_upper": 3512.0,
              "auto_lower": 2550.0,
              "auto_upper": 3288.0,
              "refseq_lower": 2409.62,
              "refseq_upper": 3443.31
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.85,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 96.1879,
              "refseq_upper": 99.61
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.13,
              "warn_upper": 5.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 4.46,
              "auto_lower": 0.22,
              "auto_upper": 4.46,
              "refseq_lower": 0.13,
              "refseq_upper": 1.5450000000000126
            },
            {
              "metric": "N50",
              "lower": 18000.0,
              "upper": null,
              "final_lower": 18000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 72032.0,
              "source": "computed",
              "ml_lower": 18366.78,
              "ml_upper": 72032.0,
              "auto_lower": 18366.785,
              "auto_upper": 72032.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 540.0,
              "final_lower": null,
              "final_upper": 540.0,
              "warn_lower": 135.0,
              "warn_upper": 410.0,
              "source": "computed",
              "ml_lower": 135.0,
              "ml_upper": 533.0,
              "auto_lower": 135.0,
              "auto_upper": 533.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 68565.4,
              "warn_upper": 243203.0,
              "source": "computed",
              "ml_lower": 68565.4,
              "ml_upper": 243203.0,
              "auto_lower": 68565.395,
              "auto_upper": 243203.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 33288,
            "refseq_count": 387,
            "final_count": 33288,
            "filtered_out_count": 0,
            "pass_count": 29908,
            "warn_count": 5320,
            "fail_count": 1275
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_gallinarum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3100000.0,
              "upper": 3800000.0,
              "final_lower": 3100000.0,
              "final_upper": 3800000.0,
              "warn_lower": 3100000.0,
              "warn_upper": 3700000.0,
              "source": "computed",
              "ml_lower": 3119693.7,
              "ml_upper": 3792603.0,
              "auto_lower": 3119693.695,
              "auto_upper": 3672241.2800000003,
              "refseq_lower": 3151534.715,
              "refseq_upper": 3792124.245
            },
            {
              "metric": "GC_Content",
              "lower": 39.87,
              "upper": 40.84,
              "final_lower": 39.87,
              "final_upper": 40.84,
              "warn_lower": 40.12,
              "warn_upper": 40.63,
              "source": "computed",
              "ml_lower": 39.871,
              "ml_upper": 40.8364,
              "auto_lower": 40.123005,
              "auto_upper": 40.698984,
              "refseq_lower": 39.8719315,
              "refseq_upper": 40.8295555
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2900.0,
              "upper": 3800.0,
              "final_lower": 2900.0,
              "final_upper": 3800.0,
              "warn_lower": 3000.0,
              "warn_upper": 3500.0,
              "source": "computed",
              "ml_lower": 2970.71,
              "ml_upper": 3713.0,
              "auto_lower": 2970.71,
              "auto_upper": 3487.2950000000005,
              "refseq_lower": 3021.665,
              "refseq_upper": 3710.57
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.54,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 90.58590000000001,
              "refseq_upper": 94.63095000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 12.0,
              "final_lower": null,
              "final_upper": 12.0,
              "warn_lower": 0.1,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.1,
              "ml_upper": 11.72,
              "auto_lower": 0.1,
              "auto_upper": 0.6933000000000004,
              "refseq_lower": 0.5136000000000001,
              "refseq_upper": 11.653400000000001
            },
            {
              "metric": "N50",
              "lower": 76000.0,
              "upper": null,
              "final_lower": 76000.0,
              "final_upper": null,
              "warn_lower": 88000.0,
              "warn_upper": 337489.11,
              "source": "computed",
              "ml_lower": 76601.63,
              "ml_upper": 337489.11,
              "auto_lower": 76601.63,
              "auto_upper": 337489.11000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 35.34,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 35.34,
              "ml_upper": 174.0,
              "auto_lower": 35.335,
              "auto_upper": 174.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 207133.72,
              "warn_upper": 842200.09,
              "source": "computed",
              "ml_lower": 207133.72,
              "ml_upper": 842200.09,
              "auto_lower": 207133.72,
              "auto_upper": 842200.0900000004,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 268,
            "refseq_count": 10,
            "final_count": 268,
            "filtered_out_count": 0,
            "pass_count": 270,
            "warn_count": 19,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Enterococcus_hirae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 3300000.0,
              "final_lower": 2600000.0,
              "final_upper": 3300000.0,
              "warn_lower": 2600000.0,
              "warn_upper": 3200000.0,
              "source": "computed",
              "ml_lower": 2669761.72,
              "ml_upper": 3233855.0,
              "auto_lower": 2669761.72,
              "auto_upper": 3206737.0399999996,
              "refseq_lower": 2672586.55,
              "refseq_upper": 3214185.35
            },
            {
              "metric": "GC_Content",
              "lower": 36.38,
              "upper": 37.16,
              "final_lower": 36.38,
              "final_upper": 37.16,
              "warn_lower": 36.49,
              "warn_upper": 36.96,
              "source": "computed",
              "ml_lower": 36.3839,
              "ml_upper": 37.1576,
              "auto_lower": 36.383912,
              "auto_upper": 37.038968,
              "refseq_lower": 36.513274,
              "refseq_upper": 37.154877500000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2400.0,
              "upper": 3200.0,
              "final_lower": 2400.0,
              "final_upper": 3200.0,
              "warn_lower": 2500.0,
              "warn_upper": 3000.0,
              "source": "computed",
              "ml_lower": 2469.12,
              "ml_upper": 3128.0,
              "auto_lower": 2469.12,
              "auto_upper": 3066.0,
              "refseq_lower": 2528.495,
              "refseq_upper": 3108.2000000000003
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.62,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 93.45490000000001,
              "refseq_upper": 98.84
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.65,
              "auto_lower": 0.01,
              "auto_upper": 1.6543999999999994,
              "refseq_lower": 0.08,
              "refseq_upper": 1.1956
            },
            {
              "metric": "N50",
              "lower": 38000.0,
              "upper": null,
              "final_lower": 38000.0,
              "final_upper": null,
              "warn_lower": 49000.0,
              "warn_upper": 327556.96,
              "source": "computed",
              "ml_lower": 38090.76,
              "ml_upper": 327556.96,
              "auto_lower": 38090.76,
              "auto_upper": 327556.9599999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 28.0,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 28.0,
              "ml_upper": 209.44,
              "auto_lower": 28.0,
              "auto_upper": 209.43999999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 108299.32,
              "warn_upper": 850437.68,
              "source": "computed",
              "ml_lower": 108299.32,
              "ml_upper": 850437.68,
              "auto_lower": 108299.32,
              "auto_upper": 850437.6799999943,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 913,
            "refseq_count": 34,
            "final_count": 913,
            "filtered_out_count": 0,
            "pass_count": 850,
            "warn_count": 96,
            "fail_count": 50
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Enterococcus_lactis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2500000.0,
              "upper": 3100000.0,
              "final_lower": 2500000.0,
              "final_upper": 3100000.0,
              "warn_lower": 2500000.0,
              "warn_upper": 3000000.0,
              "source": "computed",
              "ml_lower": 2533136.65,
              "ml_upper": 3073413.0,
              "auto_lower": 2533136.65,
              "auto_upper": 2994763.7499999995,
              "refseq_lower": 2590833.135,
              "refseq_upper": 3047793.9149999996
            },
            {
              "metric": "GC_Content",
              "lower": 37.9,
              "upper": 38.48,
              "final_lower": 37.9,
              "final_upper": 38.48,
              "warn_lower": 37.95,
              "warn_upper": 38.35,
              "source": "computed",
              "ml_lower": 37.9049,
              "ml_upper": 38.4702,
              "auto_lower": 37.904885,
              "auto_upper": 38.40384,
              "refseq_lower": 38.0488305,
              "refseq_upper": 38.4701595
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2400.0,
              "upper": 3100.0,
              "final_lower": 2400.0,
              "final_upper": 3100.0,
              "warn_lower": 2400.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2430.0,
              "ml_upper": 3078.0,
              "auto_lower": 2430.0,
              "auto_upper": 2940.25,
              "refseq_lower": 2506.0,
              "refseq_upper": 3051.1349999999998
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.4145,
              "refseq_upper": 99.42
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.03,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 1.52,
              "auto_lower": 0.03,
              "auto_upper": 1.5204999999999995,
              "refseq_lower": 0.08,
              "refseq_upper": 1.2254499999999995
            },
            {
              "metric": "N50",
              "lower": 36000.0,
              "upper": null,
              "final_lower": 36000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 298926.5,
              "source": "computed",
              "ml_lower": 36092.65,
              "ml_upper": 298926.5,
              "auto_lower": 36092.65,
              "auto_upper": 298926.4999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 27.0,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 27.0,
              "ml_upper": 222.0,
              "auto_lower": 27.0,
              "auto_upper": 222.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 114417.6,
              "warn_upper": 892660.25,
              "source": "computed",
              "ml_lower": 114417.6,
              "ml_upper": 892660.25,
              "auto_lower": 114417.6,
              "auto_upper": 892660.2499999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1191,
            "refseq_count": 28,
            "final_count": 1191,
            "filtered_out_count": 0,
            "pass_count": 1113,
            "warn_count": 122,
            "fail_count": 57
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Erwinia_amylovora": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3700000.0,
              "upper": 4000000.0,
              "final_lower": 3700000.0,
              "final_upper": 4000000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3745555.7,
              "ml_upper": 3905604.0,
              "auto_lower": 3745555.695,
              "auto_upper": 3898385.065,
              "refseq_lower": 3799973.08,
              "refseq_upper": 3903123.52
            },
            {
              "metric": "GC_Content",
              "lower": 53.35,
              "upper": 53.73,
              "final_lower": 53.35,
              "final_upper": 53.73,
              "warn_lower": 53.4,
              "warn_upper": 53.59,
              "source": "computed",
              "ml_lower": 53.3554,
              "ml_upper": 53.7283,
              "auto_lower": 53.355408000000004,
              "auto_upper": 53.622416,
              "refseq_lower": 53.576512,
              "refseq_upper": 53.710364
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 3600.0,
              "final_lower": 3400.0,
              "final_upper": 3600.0,
              "warn_lower": 3400.0,
              "warn_upper": 3600.0,
              "source": "computed",
              "ml_lower": 3417.6,
              "ml_upper": 3586.0,
              "auto_lower": 3417.595,
              "auto_upper": 3573.7200000000003,
              "refseq_lower": 3464.8,
              "refseq_upper": 3582.16
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.4,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.47840000000001,
              "refseq_upper": 98.23
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.12,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.12,
              "ml_upper": 0.89,
              "auto_lower": 0.12,
              "auto_upper": 0.5410000000000003,
              "refseq_lower": 0.1832,
              "refseq_upper": 0.8692
            },
            {
              "metric": "N50",
              "lower": 45000.0,
              "upper": null,
              "final_lower": 45000.0,
              "final_upper": null,
              "warn_lower": 129000.0,
              "warn_upper": 435581.72,
              "source": "computed",
              "ml_lower": 45923.22,
              "ml_upper": 435581.72,
              "auto_lower": 45923.225,
              "auto_upper": 435581.72,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 50.98,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 50.98,
              "ml_upper": 192.0,
              "auto_lower": 50.975,
              "auto_upper": 191.9950000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 128920.14,
              "warn_upper": 990376.37,
              "source": "computed",
              "ml_lower": 128920.14,
              "ml_upper": 990376.37,
              "auto_lower": 128920.135,
              "auto_upper": 990376.3650000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 120,
            "refseq_count": 33,
            "final_count": 120,
            "filtered_out_count": 0,
            "pass_count": 113,
            "warn_count": 6,
            "fail_count": 17
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Erysipelothrix_rhusiopathiae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2000000.0,
              "final_lower": 1700000.0,
              "final_upper": 2000000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 1900000.0,
              "source": "computed",
              "ml_lower": 1705705.24,
              "ml_upper": 1945689.0,
              "auto_lower": 1705705.24,
              "auto_upper": 1899476.1,
              "refseq_lower": 1754835.11,
              "refseq_upper": 1944131.18
            },
            {
              "metric": "GC_Content",
              "lower": 36.15,
              "upper": 36.64,
              "final_lower": 36.15,
              "final_upper": 36.64,
              "warn_lower": 36.19,
              "warn_upper": 36.49,
              "source": "computed",
              "ml_lower": 36.1538,
              "ml_upper": 36.6356,
              "auto_lower": 36.153786,
              "auto_upper": 36.503678,
              "refseq_lower": 36.274553,
              "refseq_upper": 36.635413
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2000.0,
              "final_lower": 1600.0,
              "final_upper": 2000.0,
              "warn_lower": 1600.0,
              "warn_upper": 1800.0,
              "source": "computed",
              "ml_lower": 1618.32,
              "ml_upper": 1919.0,
              "auto_lower": 1618.32,
              "auto_upper": 1819.68,
              "refseq_lower": 1708.66,
              "refseq_upper": 1916.3600000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.71,
              "ml_upper": 100.0,
              "auto_lower": 99.89,
              "auto_upper": 100.0,
              "refseq_lower": 89.9498,
              "refseq_upper": 96.99
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.72,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.72,
              "ml_upper": 3.63,
              "auto_lower": 0.8766,
              "auto_upper": 1.76,
              "refseq_lower": 0.7546499999999999,
              "refseq_upper": 3.5858999999999996
            },
            {
              "metric": "N50",
              "lower": 22000.0,
              "upper": null,
              "final_lower": 22000.0,
              "final_upper": null,
              "warn_lower": 34000.0,
              "warn_upper": 311976.76,
              "source": "computed",
              "ml_lower": 22351.22,
              "ml_upper": 311976.76,
              "auto_lower": 22351.22,
              "auto_upper": 311976.76,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 140.0,
              "final_lower": null,
              "final_upper": 140.0,
              "warn_lower": 18.66,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 18.66,
              "ml_upper": 137.74,
              "auto_lower": 18.66,
              "auto_upper": 137.74000000000035,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 72074.8,
              "warn_upper": 587570.6,
              "source": "computed",
              "ml_lower": 72074.8,
              "ml_upper": 587570.6,
              "auto_lower": 72074.8,
              "auto_upper": 587570.6000000006,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 533,
            "refseq_count": 23,
            "final_count": 533,
            "filtered_out_count": 0,
            "pass_count": 502,
            "warn_count": 48,
            "fail_count": 35
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Escherichia_albertii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5400000.0,
              "final_lower": 4400000.0,
              "final_upper": 5400000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4400527.36,
              "ml_upper": 5366623.12,
              "auto_lower": 4400527.36,
              "auto_upper": 5366623.12,
              "refseq_lower": 4572867.0,
              "refseq_upper": 5342690.2
            },
            {
              "metric": "GC_Content",
              "lower": 49.3,
              "upper": 50.17,
              "final_lower": 49.3,
              "final_upper": 50.17,
              "warn_lower": 49.37,
              "warn_upper": 49.92,
              "source": "computed",
              "ml_lower": 49.3089,
              "ml_upper": 50.1667,
              "auto_lower": 49.308895,
              "auto_upper": 49.9595465,
              "refseq_lower": 49.428979999999996,
              "refseq_upper": 50.10722
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5500.0,
              "final_lower": 4100.0,
              "final_upper": 5500.0,
              "warn_lower": 4200.0,
              "warn_upper": 5400.0,
              "source": "computed",
              "ml_lower": 4178.92,
              "ml_upper": 5461.66,
              "auto_lower": 4178.92,
              "auto_upper": 5461.665,
              "refseq_lower": 4403.4,
              "refseq_upper": 5353.4
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.42,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.428,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 1.49,
              "auto_lower": 0.05,
              "auto_upper": 1.4901999999999997,
              "refseq_lower": 0.26,
              "refseq_upper": 1.3399999999999994
            },
            {
              "metric": "N50",
              "lower": 27000.0,
              "upper": null,
              "final_lower": 27000.0,
              "final_upper": null,
              "warn_lower": 33000.0,
              "warn_upper": 439536.62,
              "source": "computed",
              "ml_lower": 27733.76,
              "ml_upper": 439536.62,
              "auto_lower": 27733.76,
              "auto_upper": 439536.62,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 470.0,
              "final_lower": null,
              "final_upper": 470.0,
              "warn_lower": 53.47,
              "warn_upper": 410.0,
              "source": "computed",
              "ml_lower": 53.47,
              "ml_upper": 467.04,
              "auto_lower": 53.47,
              "auto_upper": 467.03999999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 111016.63,
              "warn_upper": 744038.88,
              "source": "computed",
              "ml_lower": 111016.63,
              "ml_upper": 744038.88,
              "auto_lower": 111016.63,
              "auto_upper": 744038.875,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 650,
            "refseq_count": 81,
            "final_count": 650,
            "filtered_out_count": 0,
            "pass_count": 594,
            "warn_count": 65,
            "fail_count": 33
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Escherichia_coli": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4100000.0,
              "upper": 6300000.0,
              "final_lower": 4100000.0,
              "final_upper": 6300000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4165587.0,
              "ml_upper": 6250413.0,
              "auto_lower": 4343917.55,
              "auto_upper": 5735294.76,
              "refseq_lower": 4524299.92,
              "refseq_upper": 6007186.36
            },
            {
              "metric": "GC_Content",
              "lower": 50.09,
              "upper": 51.13,
              "final_lower": 50.09,
              "final_upper": 51.13,
              "warn_lower": 50.25,
              "warn_upper": 50.88,
              "source": "computed",
              "ml_lower": 50.0941,
              "ml_upper": 51.1241,
              "auto_lower": 50.1916,
              "auto_upper": 50.958186999999995,
              "refseq_lower": 50.24376,
              "refseq_upper": 50.995488
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 6500.0,
              "final_lower": 3900.0,
              "final_upper": 6500.0,
              "warn_lower": 4200.0,
              "warn_upper": 5800.0,
              "source": "computed",
              "ml_lower": 3998.0,
              "ml_upper": 6496.0,
              "auto_lower": 4190.0,
              "auto_upper": 5967.0,
              "refseq_lower": 4409.155,
              "refseq_upper": 6159.535000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.93,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.3,
              "refseq_upper": 99.56
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 16.0,
              "final_lower": null,
              "final_upper": 16.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 15.57,
              "auto_lower": 0.0,
              "auto_upper": 1.68,
              "refseq_lower": 0.15,
              "refseq_upper": 3.4
            },
            {
              "metric": "N50",
              "lower": 20000.0,
              "upper": null,
              "final_lower": 20000.0,
              "final_upper": null,
              "warn_lower": 23000.0,
              "warn_upper": 370002.96,
              "source": "computed",
              "ml_lower": 20626.0,
              "ml_upper": 370002.96,
              "auto_lower": 20626.0,
              "auto_upper": 370002.95999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 670.0,
              "final_lower": null,
              "final_upper": 670.0,
              "warn_lower": 68.0,
              "warn_upper": 600.0,
              "source": "computed",
              "ml_lower": 68.0,
              "ml_upper": 669.0,
              "auto_lower": 68.0,
              "auto_upper": 669.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 76416.13,
              "warn_upper": 842642.61,
              "source": "computed",
              "ml_lower": 76416.13,
              "ml_upper": 842642.61,
              "auto_lower": 76416.13,
              "auto_upper": 842642.61,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 371627,
            "refseq_count": 5033,
            "final_count": 371627,
            "filtered_out_count": 0,
            "pass_count": 342400,
            "warn_count": 44328,
            "fail_count": 10619
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Escherichia_fergusonii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 5300000.0,
              "final_lower": 4300000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 5200000.0,
              "source": "computed",
              "ml_lower": 4373190.17,
              "ml_upper": 5228048.0,
              "auto_lower": 4373190.17,
              "auto_upper": 5166035.715,
              "refseq_lower": 4457616.0,
              "refseq_upper": 5211839.36
            },
            {
              "metric": "GC_Content",
              "lower": 49.49,
              "upper": 50.13,
              "final_lower": 49.49,
              "final_upper": 50.13,
              "warn_lower": 49.6,
              "warn_upper": 50.07,
              "source": "computed",
              "ml_lower": 49.497,
              "ml_upper": 50.1238,
              "auto_lower": 49.49696,
              "auto_upper": 50.0949715,
              "refseq_lower": 49.614462,
              "refseq_upper": 50.1238
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4000.0,
              "upper": 5200.0,
              "final_lower": 4000.0,
              "final_upper": 5200.0,
              "warn_lower": 4100.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 4098.76,
              "ml_upper": 5130.0,
              "auto_lower": 4098.76,
              "auto_upper": 5021.24,
              "refseq_lower": 4289.335,
              "refseq_upper": 5128.66
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.94,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 90.1879,
              "refseq_upper": 98.49
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 8.29,
              "auto_lower": 0.0519,
              "auto_upper": 0.92905,
              "refseq_lower": 1.2669,
              "refseq_upper": 7.70710000000001
            },
            {
              "metric": "N50",
              "lower": 70000.0,
              "upper": null,
              "final_lower": 70000.0,
              "final_upper": null,
              "warn_lower": 102000.0,
              "warn_upper": 1107179.86,
              "source": "computed",
              "ml_lower": 70614.57,
              "ml_upper": 1107179.86,
              "auto_lower": 70614.56999999999,
              "auto_upper": 1107179.86,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 27.38,
              "warn_upper": 190.0,
              "source": "computed",
              "ml_lower": 27.38,
              "ml_upper": 209.1,
              "auto_lower": 27.38,
              "auto_upper": 209.10000000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 230908.78,
              "warn_upper": 1528193.87,
              "source": "computed",
              "ml_lower": 230908.78,
              "ml_upper": 1528193.87,
              "auto_lower": 230908.78,
              "auto_upper": 1528193.87,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 220,
            "refseq_count": 68,
            "final_count": 220,
            "filtered_out_count": 0,
            "pass_count": 206,
            "warn_count": 21,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Escherichia_marmotae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5300000.0,
              "final_lower": 4400000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 5300000.0,
              "source": "computed",
              "ml_lower": 4417623.6,
              "ml_upper": 5271453.55,
              "auto_lower": 4417623.6,
              "auto_upper": 5271453.55,
              "refseq_lower": 4463446.18,
              "refseq_upper": 5192770.52
            },
            {
              "metric": "GC_Content",
              "lower": 50.16,
              "upper": 50.58,
              "final_lower": 50.16,
              "final_upper": 50.58,
              "warn_lower": 50.2,
              "warn_upper": 50.53,
              "source": "computed",
              "ml_lower": 50.1694,
              "ml_upper": 50.5778,
              "auto_lower": 50.18219,
              "auto_upper": 50.556278999999996,
              "refseq_lower": 50.173691000000005,
              "refseq_upper": 50.575357000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4000.0,
              "upper": 5200.0,
              "final_lower": 4000.0,
              "final_upper": 5200.0,
              "warn_lower": 4100.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 4073.75,
              "ml_upper": 5159.07,
              "auto_lower": 4073.75,
              "auto_upper": 5159.07,
              "refseq_lower": 4289.09,
              "refseq_upper": 5128.07
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.07,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.1113,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 1.72,
              "auto_lower": 0.03,
              "auto_upper": 0.9758999999999998,
              "refseq_lower": 0.1926,
              "refseq_upper": 1.6905999999999999
            },
            {
              "metric": "N50",
              "lower": 54000.0,
              "upper": null,
              "final_lower": 54000.0,
              "final_upper": null,
              "warn_lower": 68000.0,
              "warn_upper": 313940.87,
              "source": "computed",
              "ml_lower": 54729.0,
              "ml_upper": 313940.87,
              "auto_lower": 54729.0,
              "auto_upper": 313940.87,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 340.0,
              "final_lower": null,
              "final_upper": 340.0,
              "warn_lower": 58.86,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 58.86,
              "ml_upper": 334.59,
              "auto_lower": 58.86,
              "auto_upper": 334.59,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 167076.0,
              "warn_upper": 706094.41,
              "source": "computed",
              "ml_lower": 167076.0,
              "ml_upper": 706094.41,
              "auto_lower": 167076.0,
              "auto_upper": 706094.41,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 463,
            "refseq_count": 15,
            "final_count": 463,
            "filtered_out_count": 0,
            "pass_count": 426,
            "warn_count": 59,
            "fail_count": 38
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Escherichia_ruysiae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 5100000.0,
              "final_lower": 4300000.0,
              "final_upper": 5100000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 4900000.0,
              "source": "computed",
              "ml_lower": 4356238.0,
              "ml_upper": 5005625.0,
              "auto_lower": 4356238.0,
              "auto_upper": 5005625.000000001,
              "refseq_lower": 4501754.0,
              "refseq_upper": 4501754.0
            },
            {
              "metric": "GC_Content",
              "lower": 50.36,
              "upper": 50.85,
              "final_lower": 50.36,
              "final_upper": 50.85,
              "warn_lower": 50.39,
              "warn_upper": 50.79,
              "source": "computed",
              "ml_lower": 50.3657,
              "ml_upper": 50.8474,
              "auto_lower": 50.36566,
              "auto_upper": 50.847359999999995,
              "refseq_lower": 50.6989,
              "refseq_upper": 50.6989
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4000.0,
              "upper": 5000.0,
              "final_lower": 4000.0,
              "final_upper": 5000.0,
              "warn_lower": 4000.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 4000.4,
              "ml_upper": 4925.4,
              "auto_lower": 4000.4,
              "auto_upper": 4925.400000000001,
              "refseq_lower": 4313.0,
              "refseq_upper": 4313.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.53,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.53,
              "refseq_upper": 99.53
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.06,
              "auto_lower": 0.006,
              "auto_upper": 1.0580000000000007,
              "refseq_lower": 0.21,
              "refseq_upper": 0.21
            },
            {
              "metric": "N50",
              "lower": 60000.0,
              "upper": null,
              "final_lower": 60000.0,
              "final_upper": null,
              "warn_lower": 84000.0,
              "warn_upper": 899627.0,
              "source": "computed",
              "ml_lower": 60489.6,
              "ml_upper": 899627.0,
              "auto_lower": 60489.6,
              "auto_upper": 899627.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 240.0,
              "final_lower": null,
              "final_upper": 240.0,
              "warn_lower": 33.6,
              "warn_upper": 220.0,
              "source": "computed",
              "ml_lower": 33.6,
              "ml_upper": 236.6,
              "auto_lower": 33.6,
              "auto_upper": 236.60000000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 165870.2,
              "warn_upper": 1475265.6,
              "source": "computed",
              "ml_lower": 165870.2,
              "ml_upper": 1475265.6,
              "auto_lower": 165870.2,
              "auto_upper": 1475265.6000000008,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 121,
            "refseq_count": 1,
            "final_count": 121,
            "filtered_out_count": 0,
            "pass_count": 110,
            "warn_count": 9,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Flavobacterium_psychrophilum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 3300000.0,
              "final_lower": 2600000.0,
              "final_upper": 3300000.0,
              "warn_lower": 2600000.0,
              "warn_upper": 3000000.0,
              "source": "computed",
              "ml_lower": 2663246.8,
              "ml_upper": 3208574.0,
              "auto_lower": 2663246.795,
              "auto_upper": 2950444.885,
              "refseq_lower": 2687272.0,
              "refseq_upper": 3147484.7999999993
            },
            {
              "metric": "GC_Content",
              "lower": 32.32,
              "upper": 32.82,
              "final_lower": 32.32,
              "final_upper": 32.82,
              "warn_lower": 32.33,
              "warn_upper": 32.57,
              "source": "computed",
              "ml_lower": 32.3272,
              "ml_upper": 32.8182,
              "auto_lower": 32.3272065,
              "auto_upper": 32.582571,
              "refseq_lower": 32.35448,
              "refseq_upper": 32.81078
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2300.0,
              "upper": 2900.0,
              "final_lower": 2300.0,
              "final_upper": 2900.0,
              "warn_lower": 2400.0,
              "warn_upper": 2800.0,
              "source": "computed",
              "ml_lower": 2388.06,
              "ml_upper": 2890.0,
              "auto_lower": 2388.06,
              "auto_upper": 2799.5249999999996,
              "refseq_lower": 2403.2,
              "refseq_upper": 2833.999999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.33,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 92.522,
              "refseq_upper": 99.53
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.62,
              "auto_lower": 0.0,
              "auto_upper": 0.07469999999999971,
              "refseq_lower": 0.16,
              "refseq_upper": 0.5899999999999995
            },
            {
              "metric": "N50",
              "lower": 49000.0,
              "upper": null,
              "final_lower": 49000.0,
              "final_upper": null,
              "warn_lower": 58000.0,
              "warn_upper": 191764.44,
              "source": "computed",
              "ml_lower": 49501.76,
              "ml_upper": 191764.44,
              "auto_lower": 49501.765,
              "auto_upper": 191764.44499999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 460.0,
              "final_lower": null,
              "final_upper": 460.0,
              "warn_lower": 83.82,
              "warn_upper": 340.0,
              "source": "computed",
              "ml_lower": 83.82,
              "ml_upper": 457.41,
              "auto_lower": 83.825,
              "auto_upper": 457.4099999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 152912.1,
              "warn_upper": 488644.5,
              "source": "computed",
              "ml_lower": 152912.1,
              "ml_upper": 488644.5,
              "auto_lower": 152912.1,
              "auto_upper": 488644.505,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 154,
            "refseq_count": 41,
            "final_count": 154,
            "filtered_out_count": 0,
            "pass_count": 140,
            "warn_count": 19,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Francisella_tularensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2100000.0,
              "final_lower": 1700000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 1900000.0,
              "source": "computed",
              "ml_lower": 1766601.94,
              "ml_upper": 2047033.0,
              "auto_lower": 1766601.94,
              "auto_upper": 1813799.56,
              "refseq_lower": 1858000.505,
              "refseq_upper": 2032245.01
            },
            {
              "metric": "GC_Content",
              "lower": 32.14,
              "upper": 32.54,
              "final_lower": 32.14,
              "final_upper": 32.54,
              "warn_lower": 32.16,
              "warn_upper": 32.32,
              "source": "computed",
              "ml_lower": 32.1465,
              "ml_upper": 32.5368,
              "auto_lower": 32.159022,
              "auto_upper": 32.345589999999994,
              "refseq_lower": 32.1474765,
              "refseq_upper": 32.5183725
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2100.0,
              "final_lower": 1800.0,
              "final_upper": 2100.0,
              "warn_lower": 1900.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1814.0,
              "ml_upper": 2043.0,
              "auto_lower": 1894.06,
              "auto_upper": 2029.98,
              "refseq_lower": 1822.505,
              "refseq_upper": 2032.92
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.53,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 92.59615,
              "refseq_upper": 99.5081
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.08,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.08,
              "ml_upper": 3.77,
              "auto_lower": 0.46,
              "auto_upper": 1.0498000000000003,
              "refseq_lower": 0.08,
              "refseq_upper": 3.7073000000000005
            },
            {
              "metric": "N50",
              "lower": 20000.0,
              "upper": null,
              "final_lower": 20000.0,
              "final_upper": null,
              "warn_lower": 22000.0,
              "warn_upper": 38285.0,
              "source": "computed",
              "ml_lower": 20615.42,
              "ml_upper": 38285.0,
              "auto_lower": 20615.42,
              "auto_upper": 38285.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 170.0,
              "final_lower": null,
              "final_upper": 170.0,
              "warn_lower": 69.0,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 69.0,
              "ml_upper": 160.94,
              "auto_lower": 69.0,
              "auto_upper": 160.94000000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 56126.0,
              "warn_upper": 148635.1,
              "source": "computed",
              "ml_lower": 56126.0,
              "ml_upper": 148635.1,
              "auto_lower": 56126.0,
              "auto_upper": 148635.1000000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1005,
            "refseq_count": 64,
            "final_count": 1005,
            "filtered_out_count": 0,
            "pass_count": 940,
            "warn_count": 90,
            "fail_count": 63
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Fusobacterium_necrophorum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2400000.0,
              "final_lower": 1900000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 1980036.11,
              "ml_upper": 2369897.28,
              "auto_lower": 1980036.11,
              "auto_upper": 2369897.275,
              "refseq_lower": 2136270.1,
              "refseq_upper": 2288418.45
            },
            {
              "metric": "GC_Content",
              "lower": 34.51,
              "upper": 35.53,
              "final_lower": 34.51,
              "final_upper": 35.53,
              "warn_lower": 34.66,
              "warn_upper": 35.35,
              "source": "computed",
              "ml_lower": 34.5189,
              "ml_upper": 35.5222,
              "auto_lower": 34.5189485,
              "auto_upper": 35.4248165,
              "refseq_lower": 34.6816575,
              "refseq_upper": 35.517385
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2500.0,
              "final_lower": 1800.0,
              "final_upper": 2500.0,
              "warn_lower": 1800.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 1844.9,
              "ml_upper": 2415.59,
              "auto_lower": 1844.9,
              "auto_upper": 2415.59,
              "refseq_lower": 2021.525,
              "refseq_upper": 2310.025
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.5,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 91.51975,
              "refseq_upper": 98.553
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 4.13,
              "auto_lower": 0.024900000000000002,
              "auto_upper": 0.5025499999999999,
              "refseq_lower": 0.206,
              "refseq_upper": 4.1
            },
            {
              "metric": "N50",
              "lower": 38000.0,
              "upper": null,
              "final_lower": 38000.0,
              "final_upper": null,
              "warn_lower": 47000.0,
              "warn_upper": 305700.7,
              "source": "computed",
              "ml_lower": 38824.54,
              "ml_upper": 305700.7,
              "auto_lower": 38824.545,
              "auto_upper": 305700.70499999955,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 34.24,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 34.24,
              "ml_upper": 143.53,
              "auto_lower": 34.235,
              "auto_upper": 143.52999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 114092.82,
              "warn_upper": 731596.5,
              "source": "computed",
              "ml_lower": 114092.82,
              "ml_upper": 731596.5,
              "auto_lower": 114092.815,
              "auto_upper": 731596.495,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 350,
            "refseq_count": 6,
            "final_count": 350,
            "filtered_out_count": 0,
            "pass_count": 329,
            "warn_count": 32,
            "fail_count": 19
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Glaesserella_parasuis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2600000.0,
              "final_lower": 2100000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2142500.4,
              "ml_upper": 2570730.0,
              "auto_lower": 2142500.4,
              "auto_upper": 2423398.645,
              "refseq_lower": 2252205.24,
              "refseq_upper": 2570725.6
            },
            {
              "metric": "GC_Content",
              "lower": 39.49,
              "upper": 40.13,
              "final_lower": 39.49,
              "final_upper": 40.13,
              "warn_lower": 39.56,
              "warn_upper": 40.08,
              "source": "computed",
              "ml_lower": 39.4984,
              "ml_upper": 40.1218,
              "auto_lower": 39.4984185,
              "auto_upper": 40.121777,
              "refseq_lower": 39.5543,
              "refseq_upper": 40.071752000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2600.0,
              "final_lower": 2000.0,
              "final_upper": 2600.0,
              "warn_lower": 2100.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 2079.74,
              "ml_upper": 2579.0,
              "auto_lower": 2079.735,
              "auto_upper": 2494.1899999999996,
              "refseq_lower": 2225.32,
              "refseq_upper": 2574.6
            },
            {
              "metric": "Completeness_Specific",
              "lower": 85.0,
              "upper": null,
              "final_lower": 85.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 85.06,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 85.8806,
              "refseq_upper": 97.77
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 6.93,
              "auto_lower": 0.01,
              "auto_upper": 1.5433999999999992,
              "refseq_lower": 1.7766,
              "refseq_upper": 6.853
            },
            {
              "metric": "N50",
              "lower": 16000.0,
              "upper": null,
              "final_lower": 16000.0,
              "final_upper": null,
              "warn_lower": 21000.0,
              "warn_upper": 71324.15,
              "source": "computed",
              "ml_lower": 16770.25,
              "ml_upper": 71324.15,
              "auto_lower": 16770.25,
              "auto_upper": 71324.14999999992,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 136.42,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 136.42,
              "ml_upper": 327.75,
              "auto_lower": 136.415,
              "auto_upper": 327.75499999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 59703.48,
              "warn_upper": 254296.62,
              "source": "computed",
              "ml_lower": 59703.48,
              "ml_upper": 254296.62,
              "auto_lower": 59703.48,
              "auto_upper": 254296.61999999994,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 484,
            "refseq_count": 45,
            "final_count": 484,
            "filtered_out_count": 0,
            "pass_count": 454,
            "warn_count": 50,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Haemophilus_haemolyticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2100000.0,
              "final_lower": 1800000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2100000.0,
              "source": "computed",
              "ml_lower": 1804755.31,
              "ml_upper": 2048873.41,
              "auto_lower": 1804755.31,
              "auto_upper": 2048873.4099999997,
              "refseq_lower": 1824387.525,
              "refseq_upper": 1972100.575
            },
            {
              "metric": "GC_Content",
              "lower": 38.28,
              "upper": 38.74,
              "final_lower": 38.28,
              "final_upper": 38.74,
              "warn_lower": 38.3,
              "warn_upper": 38.63,
              "source": "computed",
              "ml_lower": 38.289,
              "ml_upper": 38.7312,
              "auto_lower": 38.289038999999995,
              "auto_upper": 38.731187999999996,
              "refseq_lower": 38.490015,
              "refseq_upper": 38.591719999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2000.0,
              "final_lower": 1700.0,
              "final_upper": 2000.0,
              "warn_lower": 1700.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1701.13,
              "ml_upper": 1989.93,
              "auto_lower": 1701.13,
              "auto_upper": 1989.9299999999998,
              "refseq_lower": 1767.1,
              "refseq_upper": 1905.075
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.18,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.18775000000001,
              "refseq_upper": 97.298
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.62,
              "auto_lower": 0.0,
              "auto_upper": 0.33739999999999953,
              "refseq_lower": 0.4235,
              "refseq_upper": 1.6187500000000001
            },
            {
              "metric": "N50",
              "lower": 46000.0,
              "upper": null,
              "final_lower": 46000.0,
              "final_upper": null,
              "warn_lower": 50000.0,
              "warn_upper": 377348.44,
              "source": "computed",
              "ml_lower": 46476.36,
              "ml_upper": 377348.44,
              "auto_lower": 46476.36,
              "auto_upper": 377348.44,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 18.71,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 18.71,
              "ml_upper": 100.22,
              "auto_lower": 18.71,
              "auto_upper": 100.21999999999986,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 114925.07,
              "warn_upper": 603463.62,
              "source": "computed",
              "ml_lower": 114925.07,
              "ml_upper": 603463.62,
              "auto_lower": 114925.07,
              "auto_upper": 603463.6199999996,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 143,
            "refseq_count": 6,
            "final_count": 143,
            "filtered_out_count": 0,
            "pass_count": 134,
            "warn_count": 11,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 1750000.0,
              "final_lower": 1800000.0,
              "final_upper": 1750000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 1750000.0,
              "source": "pinned",
              "ml_lower": 1804755.31,
              "ml_upper": 2048873.41,
              "auto_lower": 1804755.31,
              "auto_upper": 2048873.4099999997,
              "refseq_lower": 1824387.525,
              "refseq_upper": 1972100.575
            },
            {
              "metric": "GC_Content",
              "lower": 38.28,
              "upper": 38.74,
              "final_lower": 38.28,
              "final_upper": 38.74,
              "warn_lower": 38.3,
              "warn_upper": 38.63,
              "source": "computed",
              "ml_lower": 38.289,
              "ml_upper": 38.7312,
              "auto_lower": 38.289038999999995,
              "auto_upper": 38.731187999999996,
              "refseq_lower": 38.490015,
              "refseq_upper": 38.591719999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2000.0,
              "final_lower": 1700.0,
              "final_upper": 2000.0,
              "warn_lower": 1700.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1701.13,
              "ml_upper": 1989.93,
              "auto_lower": 1701.13,
              "auto_upper": 1989.9299999999998,
              "refseq_lower": 1767.1,
              "refseq_upper": 1905.075
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.18,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.18775000000001,
              "refseq_upper": 97.298
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.62,
              "auto_lower": 0.0,
              "auto_upper": 0.33739999999999953,
              "refseq_lower": 0.4235,
              "refseq_upper": 1.6187500000000001
            },
            {
              "metric": "N50",
              "lower": 46000.0,
              "upper": null,
              "final_lower": 46000.0,
              "final_upper": null,
              "warn_lower": 50000.0,
              "warn_upper": 377348.44,
              "source": "computed",
              "ml_lower": 46476.36,
              "ml_upper": 377348.44,
              "auto_lower": 46476.36,
              "auto_upper": 377348.44,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 18.71,
              "warn_upper": 100.0,
              "source": "pinned",
              "ml_lower": 18.71,
              "ml_upper": 100.22,
              "auto_lower": 18.71,
              "auto_upper": 100.21999999999986,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 114925.07,
              "warn_upper": 603463.62,
              "source": "computed",
              "ml_lower": 114925.07,
              "ml_upper": 603463.62,
              "auto_lower": 114925.07,
              "auto_upper": 603463.6199999996,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 143,
            "refseq_count": 6,
            "final_count": 143,
            "filtered_out_count": 0,
            "pass_count": 134,
            "warn_count": 11,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Haemophilus_influenzae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2200000.0,
              "final_lower": 1700000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1753596.0,
              "ml_upper": 2103303.0,
              "auto_lower": 1760698.48,
              "auto_upper": 1988387.1199999994,
              "refseq_lower": 1786223.33,
              "refseq_upper": 2102044.64
            },
            {
              "metric": "GC_Content",
              "lower": 37.77,
              "upper": 38.47,
              "final_lower": 37.77,
              "final_upper": 38.47,
              "warn_lower": 37.81,
              "warn_upper": 38.21,
              "source": "computed",
              "ml_lower": 37.7719,
              "ml_upper": 38.4638,
              "auto_lower": 37.77188,
              "auto_upper": 38.282948,
              "refseq_lower": 37.863326,
              "refseq_upper": 38.446119
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2200.0,
              "final_lower": 1600.0,
              "final_upper": 2200.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1669.0,
              "ml_upper": 2157.0,
              "auto_lower": 1669.0,
              "auto_upper": 1997.0,
              "refseq_lower": 1746.45,
              "refseq_upper": 2132.3399999999997
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.62,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 94.4194,
              "refseq_upper": 99.7651
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.13,
              "auto_lower": 0.0,
              "auto_upper": 1.3827999999999883,
              "refseq_lower": 0.02,
              "refseq_upper": 4.508
            },
            {
              "metric": "N50",
              "lower": 30000.0,
              "upper": null,
              "final_lower": 30000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 1150431.76,
              "source": "computed",
              "ml_lower": 30065.36,
              "ml_upper": 1150431.76,
              "auto_lower": 30065.36,
              "auto_upper": 1150431.76,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 140.0,
              "final_lower": null,
              "final_upper": 140.0,
              "warn_lower": 16.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 16.0,
              "ml_upper": 132.0,
              "auto_lower": 16.0,
              "auto_upper": 132.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90974.0,
              "warn_upper": 1150431.76,
              "source": "computed",
              "ml_lower": 90974.0,
              "ml_upper": 1150431.76,
              "auto_lower": 90974.0,
              "auto_upper": 1150431.76,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 11473,
            "refseq_count": 299,
            "final_count": 11473,
            "filtered_out_count": 0,
            "pass_count": 10503,
            "warn_count": 1422,
            "fail_count": 575
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2000000.0,
              "final_lower": 1700000.0,
              "final_upper": 2000000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2000000.0,
              "source": "pinned",
              "ml_lower": 1753596.0,
              "ml_upper": 2103303.0,
              "auto_lower": 1760698.48,
              "auto_upper": 1988387.1199999994,
              "refseq_lower": 1786223.33,
              "refseq_upper": 2102044.64
            },
            {
              "metric": "GC_Content",
              "lower": 37.77,
              "upper": 38.47,
              "final_lower": 37.77,
              "final_upper": 38.47,
              "warn_lower": 37.81,
              "warn_upper": 38.21,
              "source": "computed",
              "ml_lower": 37.7719,
              "ml_upper": 38.4638,
              "auto_lower": 37.77188,
              "auto_upper": 38.282948,
              "refseq_lower": 37.863326,
              "refseq_upper": 38.446119
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2200.0,
              "final_lower": 1600.0,
              "final_upper": 2200.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1669.0,
              "ml_upper": 2157.0,
              "auto_lower": 1669.0,
              "auto_upper": 1997.0,
              "refseq_lower": 1746.45,
              "refseq_upper": 2132.3399999999997
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.62,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 94.4194,
              "refseq_upper": 99.7651
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.13,
              "auto_lower": 0.0,
              "auto_upper": 1.3827999999999883,
              "refseq_lower": 0.02,
              "refseq_upper": 4.508
            },
            {
              "metric": "N50",
              "lower": 30000.0,
              "upper": null,
              "final_lower": 30000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 1150431.76,
              "source": "computed",
              "ml_lower": 30065.36,
              "ml_upper": 1150431.76,
              "auto_lower": 30065.36,
              "auto_upper": 1150431.76,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 16.0,
              "warn_upper": 100.0,
              "source": "pinned",
              "ml_lower": 16.0,
              "ml_upper": 132.0,
              "auto_lower": 16.0,
              "auto_upper": 132.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 90974.0,
              "warn_upper": 1150431.76,
              "source": "computed",
              "ml_lower": 90974.0,
              "ml_upper": 1150431.76,
              "auto_lower": 90974.0,
              "auto_upper": 1150431.76,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 11473,
            "refseq_count": 299,
            "final_count": 11473,
            "filtered_out_count": 0,
            "pass_count": 10503,
            "warn_count": 1422,
            "fail_count": 575
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Haemophilus_parainfluenzae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2300000.0,
              "final_lower": 1800000.0,
              "final_upper": 2300000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1855648.03,
              "ml_upper": 2228071.0,
              "auto_lower": 1855648.03,
              "auto_upper": 2212501.55,
              "refseq_lower": 1911576.5,
              "refseq_upper": 2222969.3
            },
            {
              "metric": "GC_Content",
              "lower": 39.1,
              "upper": 39.83,
              "final_lower": 39.1,
              "final_upper": 39.83,
              "warn_lower": 39.2,
              "warn_upper": 39.66,
              "source": "computed",
              "ml_lower": 39.108,
              "ml_upper": 39.821,
              "auto_lower": 39.108039,
              "auto_upper": 39.821041,
              "refseq_lower": 39.3072,
              "refseq_upper": 39.706160000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2300.0,
              "final_lower": 1700.0,
              "final_upper": 2300.0,
              "warn_lower": 1800.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1791.67,
              "ml_upper": 2244.0,
              "auto_lower": 1791.67,
              "auto_upper": 2204.79,
              "refseq_lower": 1856.0,
              "refseq_upper": 2236.1
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.23,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.254,
              "refseq_upper": 99.726
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.5,
              "auto_lower": 0.0,
              "auto_upper": 1.4986000000000002,
              "refseq_lower": 0.19,
              "refseq_upper": 1.3867500000000004
            },
            {
              "metric": "N50",
              "lower": 11000.0,
              "upper": null,
              "final_lower": 11000.0,
              "final_upper": null,
              "warn_lower": 12000.0,
              "warn_upper": 441357.23,
              "source": "computed",
              "ml_lower": 11078.4,
              "ml_upper": 441357.23,
              "auto_lower": 11078.4,
              "auto_upper": 441357.23000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 19.38,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 19.38,
              "ml_upper": 323.03,
              "auto_lower": 19.38,
              "auto_upper": 323.03000000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 32857.55,
              "warn_upper": 590376.7,
              "source": "computed",
              "ml_lower": 32857.55,
              "ml_upper": 590376.7,
              "auto_lower": 32857.55,
              "auto_upper": 590376.7000000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 139,
            "refseq_count": 21,
            "final_count": 139,
            "filtered_out_count": 0,
            "pass_count": 130,
            "warn_count": 15,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Hafnia_paralvei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5100000.0,
              "final_lower": 4400000.0,
              "final_upper": 5100000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4470800.24,
              "ml_upper": 5057347.9,
              "auto_lower": 4470800.24,
              "auto_upper": 5057347.8950000005,
              "refseq_lower": 4520871.12,
              "refseq_upper": 4969870.96
            },
            {
              "metric": "GC_Content",
              "lower": 47.87,
              "upper": 48.37,
              "final_lower": 47.87,
              "final_upper": 48.37,
              "warn_lower": 47.92,
              "warn_upper": 48.31,
              "source": "computed",
              "ml_lower": 47.8761,
              "ml_upper": 48.3636,
              "auto_lower": 47.876118,
              "auto_upper": 48.3316685,
              "refseq_lower": 47.988792000000004,
              "refseq_upper": 48.357195999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4800.0,
              "final_lower": 3900.0,
              "final_upper": 4800.0,
              "warn_lower": 4000.0,
              "warn_upper": 4700.0,
              "source": "computed",
              "ml_lower": 3979.38,
              "ml_upper": 4742.69,
              "auto_lower": 3979.375,
              "auto_upper": 4742.685,
              "refseq_lower": 4103.08,
              "refseq_upper": 4604.68
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.59,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.59,
              "refseq_upper": 99.59
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 0.92,
              "auto_lower": 0.02,
              "auto_upper": 0.9186500000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 79000.0,
              "upper": null,
              "final_lower": 79000.0,
              "final_upper": null,
              "warn_lower": 115000.0,
              "warn_upper": 946699.28,
              "source": "computed",
              "ml_lower": 79747.98,
              "ml_upper": 946699.28,
              "auto_lower": 79747.985,
              "auto_upper": 946699.275,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 37.0,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 37.0,
              "ml_upper": 170.78,
              "auto_lower": 37.0,
              "auto_upper": 170.77500000000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 272350.58,
              "warn_upper": 2244623.23,
              "source": "computed",
              "ml_lower": 272350.58,
              "ml_upper": 2244623.23,
              "auto_lower": 272350.58,
              "auto_upper": 2244623.23,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 210,
            "refseq_count": 9,
            "final_count": 210,
            "filtered_out_count": 0,
            "pass_count": 193,
            "warn_count": 23,
            "fail_count": 17
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Helicobacter_pylori": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1500000.0,
              "upper": 1800000.0,
              "final_lower": 1500000.0,
              "final_upper": 1800000.0,
              "warn_lower": 1500000.0,
              "warn_upper": 1700000.0,
              "source": "computed",
              "ml_lower": 1507930.0,
              "ml_upper": 1745797.0,
              "auto_lower": 1540143.38,
              "auto_upper": 1692593.07,
              "refseq_lower": 1514160.25,
              "refseq_upper": 1729143.5
            },
            {
              "metric": "GC_Content",
              "lower": 38.42,
              "upper": 39.31,
              "final_lower": 38.42,
              "final_upper": 39.31,
              "warn_lower": 38.65,
              "warn_upper": 39.2,
              "source": "computed",
              "ml_lower": 38.4248,
              "ml_upper": 39.3011,
              "auto_lower": 38.536024,
              "auto_upper": 39.268856,
              "refseq_lower": 38.539812500000004,
              "refseq_upper": 39.259462500000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1400.0,
              "upper": 1700.0,
              "final_lower": 1400.0,
              "final_upper": 1700.0,
              "warn_lower": 1400.0,
              "warn_upper": 1700.0,
              "source": "computed",
              "ml_lower": 1456.0,
              "ml_upper": 1677.0,
              "auto_lower": 1477.0,
              "auto_upper": 1658.69,
              "refseq_lower": 1474.625,
              "refseq_upper": 1670.375
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.98,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 96.16,
              "refseq_upper": 99.5425
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.06,
              "auto_lower": 0.0,
              "auto_upper": 1.0597000000000072,
              "refseq_lower": 0.04,
              "refseq_upper": 0.7510000000000001
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 39000.0,
              "warn_upper": 193268.07,
              "source": "computed",
              "ml_lower": 31379.83,
              "ml_upper": 193268.07,
              "auto_lower": 31379.83,
              "auto_upper": 193268.07000000012,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 140.0,
              "final_lower": null,
              "final_upper": 140.0,
              "warn_lower": 22.0,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 22.0,
              "ml_upper": 132.38,
              "auto_lower": 22.0,
              "auto_upper": 132.3800000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 84234.86,
              "warn_upper": 501880.69,
              "source": "computed",
              "ml_lower": 84234.86,
              "ml_upper": 501880.69,
              "auto_lower": 84234.86,
              "auto_upper": 501880.69,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1863,
            "refseq_count": 376,
            "final_count": 1863,
            "filtered_out_count": 0,
            "pass_count": 1762,
            "warn_count": 171,
            "fail_count": 95
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Hungateiclostridium_thermocellum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3400000.0,
              "upper": 4000000.0,
              "final_lower": 3400000.0,
              "final_upper": 4000000.0,
              "warn_lower": 3400000.0,
              "warn_upper": 3600000.0,
              "source": "computed",
              "ml_lower": 3465419.78,
              "ml_upper": 3971483.0,
              "auto_lower": 3465419.78,
              "auto_upper": 3502850.025,
              "refseq_lower": 3555023.125,
              "refseq_upper": 3968278.45
            },
            {
              "metric": "GC_Content",
              "lower": 38.89,
              "upper": 39.18,
              "final_lower": 38.89,
              "final_upper": 39.18,
              "warn_lower": 39.07,
              "warn_upper": 39.11,
              "source": "computed",
              "ml_lower": 38.8963,
              "ml_upper": 39.1703,
              "auto_lower": 39.0721455,
              "auto_upper": 39.114103,
              "refseq_lower": 38.898557499999995,
              "refseq_upper": 39.169797499999994
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3000.0,
              "upper": 3500.0,
              "final_lower": 3000.0,
              "final_upper": 3500.0,
              "warn_lower": 3000.0,
              "warn_upper": 3200.0,
              "source": "computed",
              "ml_lower": 3034.48,
              "ml_upper": 3495.0,
              "auto_lower": 3034.485,
              "auto_upper": 3129.515,
              "refseq_lower": 3102.175,
              "refseq_upper": 3492.75
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.48,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 97.48725,
              "refseq_upper": 98.75475
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.34,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.34,
              "ml_upper": 3.06,
              "auto_lower": 0.34485,
              "auto_upper": 0.6363499999999987,
              "refseq_lower": 0.969,
              "refseq_upper": 3.0197499999999993
            },
            {
              "metric": "N50",
              "lower": 77000.0,
              "upper": null,
              "final_lower": 77000.0,
              "final_upper": null,
              "warn_lower": 80000.0,
              "warn_upper": 127100.0,
              "source": "computed",
              "ml_lower": 77884.24,
              "ml_upper": 127100.0,
              "auto_lower": 77884.245,
              "auto_upper": 127100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 116.97,
              "warn_upper": 210.0,
              "source": "computed",
              "ml_lower": 116.97,
              "ml_upper": 208.54,
              "auto_lower": 116.97,
              "auto_upper": 208.54499999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 206414.14,
              "warn_upper": 347109.25,
              "source": "computed",
              "ml_lower": 206414.14,
              "ml_upper": 347109.25,
              "auto_lower": 206414.145,
              "auto_upper": 347109.2499999996,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 298,
            "refseq_count": 6,
            "final_count": 298,
            "filtered_out_count": 0,
            "pass_count": 290,
            "warn_count": 14,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Janthinobacterium_lividum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6000000.0,
              "upper": 6800000.0,
              "final_lower": 6000000.0,
              "final_upper": 6800000.0,
              "warn_lower": 6000000.0,
              "warn_upper": 6600000.0,
              "source": "computed",
              "ml_lower": 6042276.6,
              "ml_upper": 6762807.0,
              "auto_lower": 6042276.6,
              "auto_upper": 6671668.46,
              "refseq_lower": 6374807.6,
              "refseq_upper": 6762641.6
            },
            {
              "metric": "GC_Content",
              "lower": 62.36,
              "upper": 62.85,
              "final_lower": 62.36,
              "final_upper": 62.85,
              "warn_lower": 62.45,
              "warn_upper": 62.8,
              "source": "computed",
              "ml_lower": 62.3616,
              "ml_upper": 62.8441,
              "auto_lower": 62.3616,
              "auto_upper": 62.844128,
              "refseq_lower": 62.3837725,
              "refseq_upper": 62.733700000000006
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6100.0,
              "final_lower": 5300.0,
              "final_upper": 6100.0,
              "warn_lower": 5300.0,
              "warn_upper": 6000.0,
              "source": "computed",
              "ml_lower": 5348.78,
              "ml_upper": 6077.0,
              "auto_lower": 5348.785,
              "auto_upper": 6038.06,
              "refseq_lower": 5706.1,
              "refseq_upper": 6075.6
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.03,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.037,
              "refseq_upper": 99.59275
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 8.14,
              "auto_lower": 0.011899999999999999,
              "auto_upper": 0.41860000000000014,
              "refseq_lower": 6.85725,
              "refseq_upper": 8.1305
            },
            {
              "metric": "N50",
              "lower": 14000.0,
              "upper": null,
              "final_lower": 14000.0,
              "final_upper": null,
              "warn_lower": 18000.0,
              "warn_upper": 808657.81,
              "source": "computed",
              "ml_lower": 14631.13,
              "ml_upper": 808657.81,
              "auto_lower": 14631.13,
              "auto_upper": 808657.8050000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 860.0,
              "final_lower": null,
              "final_upper": 860.0,
              "warn_lower": 51.6,
              "warn_upper": 730.0,
              "source": "computed",
              "ml_lower": 51.6,
              "ml_upper": 850.32,
              "auto_lower": 51.595,
              "auto_upper": 850.325,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 70230.15,
              "warn_upper": 1542324.52,
              "source": "computed",
              "ml_lower": 70230.15,
              "ml_upper": 1542324.52,
              "auto_lower": 70230.15,
              "auto_upper": 1542324.5200000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 120,
            "refseq_count": 6,
            "final_count": 120,
            "filtered_out_count": 0,
            "pass_count": 116,
            "warn_count": 10,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Klebsiella_aerogenes": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6000000.0,
              "final_lower": 4900000.0,
              "final_upper": 6000000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5600000.0,
              "source": "computed",
              "ml_lower": 4959710.18,
              "ml_upper": 5977734.0,
              "auto_lower": 4959710.175,
              "auto_upper": 5621231.75,
              "refseq_lower": 5027366.225,
              "refseq_upper": 5924745.8100000005
            },
            {
              "metric": "GC_Content",
              "lower": 54.23,
              "upper": 55.25,
              "final_lower": 54.23,
              "final_upper": 55.25,
              "warn_lower": 54.6,
              "warn_upper": 55.21,
              "source": "computed",
              "ml_lower": 54.2393,
              "ml_upper": 55.2455,
              "auto_lower": 54.468305,
              "auto_upper": 55.24554,
              "refseq_lower": 54.279264,
              "refseq_upper": 55.1949315
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 6000.0,
              "final_lower": 4500.0,
              "final_upper": 6000.0,
              "warn_lower": 4600.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 4597.73,
              "ml_upper": 5906.0,
              "auto_lower": 4597.725,
              "auto_upper": 5334.25,
              "refseq_lower": 4777.76,
              "refseq_upper": 5826.945
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.9,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 92.43260000000001,
              "refseq_upper": 98.02
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 9.34,
              "auto_lower": 0.05,
              "auto_upper": 2.1369999999999982,
              "refseq_lower": 0.56335,
              "refseq_upper": 8.394250000000001
            },
            {
              "metric": "N50",
              "lower": 78000.0,
              "upper": null,
              "final_lower": 78000.0,
              "final_upper": null,
              "warn_lower": 132000.0,
              "warn_upper": 1120751.72,
              "source": "computed",
              "ml_lower": 78974.95,
              "ml_upper": 1120751.72,
              "auto_lower": 78974.95,
              "auto_upper": 1120751.7249999987,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 31.58,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 31.58,
              "ml_upper": 191.85,
              "auto_lower": 31.575,
              "auto_upper": 191.8499999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 234374.02,
              "warn_upper": 2322445.62,
              "source": "computed",
              "ml_lower": 234374.02,
              "ml_upper": 2322445.62,
              "auto_lower": 234374.025,
              "auto_upper": 2322445.624999997,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1516,
            "refseq_count": 98,
            "final_count": 1516,
            "filtered_out_count": 0,
            "pass_count": 1386,
            "warn_count": 157,
            "fail_count": 79
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_africana": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 5400000.0,
              "final_lower": 5200000.0,
              "final_upper": 5400000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 5217793.0,
              "ml_upper": 5398309.0,
              "auto_lower": 5217793.0,
              "auto_upper": 5398309.0,
              "refseq_lower": 5268423.0,
              "refseq_upper": 5443802.0
            },
            {
              "metric": "GC_Content",
              "lower": 56.72,
              "upper": 57.24,
              "final_lower": 56.72,
              "final_upper": 57.24,
              "warn_lower": 56.72,
              "warn_upper": 57.24,
              "source": "computed",
              "ml_lower": 56.7216,
              "ml_upper": 57.2322,
              "auto_lower": 56.72157707163484,
              "auto_upper": 57.23218609860529,
              "refseq_lower": 56.697,
              "refseq_upper": 57.2147
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4800.0,
              "upper": 5100.0,
              "final_lower": 4800.0,
              "final_upper": 5100.0,
              "warn_lower": 4800.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 4821.0,
              "ml_upper": 5018.0,
              "auto_lower": 4821.0,
              "auto_upper": 5018.0,
              "refseq_lower": 5025.625,
              "refseq_upper": 5250.775
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.77,
              "refseq_upper": 99.06
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.04,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 0.09,
              "auto_lower": 0.04,
              "auto_upper": 0.09,
              "refseq_lower": 0.68,
              "refseq_upper": 1.02
            },
            {
              "metric": "N50",
              "lower": 281000.0,
              "upper": null,
              "final_lower": 281000.0,
              "final_upper": null,
              "warn_lower": 281000.0,
              "warn_upper": 291469.0,
              "source": "computed",
              "ml_lower": 281432.0,
              "ml_upper": 291469.0,
              "auto_lower": 281432.0,
              "auto_upper": 291469.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 60.0,
              "final_lower": null,
              "final_upper": 60.0,
              "warn_lower": 44.0,
              "warn_upper": 60.0,
              "source": "computed",
              "ml_lower": 44.0,
              "ml_upper": 58.0,
              "auto_lower": 44.0,
              "auto_upper": 58.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 551773.0,
              "warn_upper": 903172.0,
              "source": "computed",
              "ml_lower": 551773.0,
              "ml_upper": 903172.0,
              "auto_lower": 551773.0,
              "auto_upper": 903172.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 6,
            "refseq_count": 6,
            "final_count": 6,
            "filtered_out_count": 0,
            "pass_count": 0,
            "warn_count": 0,
            "fail_count": 99
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_grimontii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5500000.0,
              "upper": 6800000.0,
              "final_lower": 5500000.0,
              "final_upper": 6800000.0,
              "warn_lower": 5600000.0,
              "warn_upper": 6600000.0,
              "source": "computed",
              "ml_lower": 5592035.0,
              "ml_upper": 6778239.0,
              "auto_lower": 5615495.905,
              "auto_upper": 6667353.895,
              "refseq_lower": 5592035.34,
              "refseq_upper": 6767861.86
            },
            {
              "metric": "GC_Content",
              "lower": 54.77,
              "upper": 56.13,
              "final_lower": 54.77,
              "final_upper": 56.13,
              "warn_lower": 55.04,
              "warn_upper": 56.06,
              "source": "computed",
              "ml_lower": 54.7721,
              "ml_upper": 56.1297,
              "auto_lower": 54.7720815,
              "auto_upper": 56.129667000000005,
              "refseq_lower": 55.087338,
              "refseq_upper": 56.053509
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5100.0,
              "upper": 6700.0,
              "final_lower": 5100.0,
              "final_upper": 6700.0,
              "warn_lower": 5200.0,
              "warn_upper": 6400.0,
              "source": "computed",
              "ml_lower": 5138.92,
              "ml_upper": 6621.0,
              "auto_lower": 5138.925,
              "auto_upper": 6443.1,
              "refseq_lower": 5263.17,
              "refseq_upper": 6616.41
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.99,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.00189999999999,
              "refseq_upper": 99.64
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.06,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 1.77,
              "auto_lower": 0.06,
              "auto_upper": 1.58005,
              "refseq_lower": 0.4219,
              "refseq_upper": 1.7172999999999994
            },
            {
              "metric": "N50",
              "lower": 93000.0,
              "upper": null,
              "final_lower": 93000.0,
              "final_upper": null,
              "warn_lower": 110000.0,
              "warn_upper": 934424.98,
              "source": "computed",
              "ml_lower": 93108.73,
              "ml_upper": 934424.98,
              "auto_lower": 93108.73,
              "auto_upper": 934424.98,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 320.0,
              "final_lower": null,
              "final_upper": 320.0,
              "warn_lower": 39.0,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 39.0,
              "ml_upper": 312.02,
              "auto_lower": 39.0,
              "auto_upper": 312.015,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 289854.5,
              "warn_upper": 2395092.32,
              "source": "computed",
              "ml_lower": 289854.5,
              "ml_upper": 2395092.32,
              "auto_lower": 289854.505,
              "auto_upper": 2395092.319999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 600,
            "refseq_count": 35,
            "final_count": 600,
            "filtered_out_count": 0,
            "pass_count": 548,
            "warn_count": 66,
            "fail_count": 35
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [
              "The K. grimontii reference dataset has been flagged as potentially containing misclassified K. pasteurii genomes (Klebsiella oxytoca complex group, Nov 2025 feedback survey). Thresholds will be revised once the dataset has been re-curated."
            ],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_huaxiensis": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6200000.0,
              "upper": 6400000.0,
              "final_lower": 6200000.0,
              "final_upper": 6400000.0,
              "warn_lower": 6200000.0,
              "warn_upper": 6400000.0,
              "source": "computed",
              "ml_lower": 6230971.0,
              "ml_upper": 6316409.0,
              "auto_lower": 6230971.3,
              "auto_upper": 6316407.98,
              "refseq_lower": 6300829.0,
              "refseq_upper": 6361207.0
            },
            {
              "metric": "GC_Content",
              "lower": 53.26,
              "upper": 53.34,
              "final_lower": 53.26,
              "final_upper": 53.34,
              "warn_lower": 53.26,
              "warn_upper": 53.34,
              "source": "computed",
              "ml_lower": 53.2651,
              "ml_upper": 53.3355,
              "auto_lower": 53.26513420146541,
              "auto_upper": 53.33546527934018,
              "refseq_lower": 53.2789,
              "refseq_upper": 53.3318
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5700.0,
              "upper": 6000.0,
              "final_lower": 5700.0,
              "final_upper": 6000.0,
              "warn_lower": 5700.0,
              "warn_upper": 6000.0,
              "source": "computed",
              "ml_lower": 5780.0,
              "ml_upper": 5947.0,
              "auto_lower": 5780.015,
              "auto_upper": 5947.0,
              "refseq_lower": 5951.47,
              "refseq_upper": 6069.85
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.2,
              "refseq_upper": 98.25
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.89,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.89,
              "ml_upper": 1.67,
              "auto_lower": 0.89,
              "auto_upper": 1.67,
              "refseq_lower": 2.61,
              "refseq_upper": 2.96
            },
            {
              "metric": "N50",
              "lower": 176000.0,
              "upper": null,
              "final_lower": 176000.0,
              "final_upper": null,
              "warn_lower": 176000.0,
              "warn_upper": 434410.0,
              "source": "computed",
              "ml_lower": 176185.0,
              "ml_upper": 434410.0,
              "auto_lower": 176185.0,
              "auto_upper": 434410.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 80.0,
              "final_lower": null,
              "final_upper": 80.0,
              "warn_lower": 33.0,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 33.0,
              "ml_upper": 77.0,
              "auto_lower": 33.015,
              "auto_upper": 77.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 461578.0,
              "warn_upper": 812983.0,
              "source": "computed",
              "ml_lower": 461578.0,
              "ml_upper": 812983.0,
              "auto_lower": 461578.0,
              "auto_upper": 812983.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 4,
            "refseq_count": 4,
            "final_count": 4,
            "filtered_out_count": 0,
            "pass_count": 1,
            "warn_count": 0,
            "fail_count": 26
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_michiganensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5700000.0,
              "upper": 7000000.0,
              "final_lower": 5700000.0,
              "final_upper": 7000000.0,
              "warn_lower": 5800000.0,
              "warn_upper": 6700000.0,
              "source": "computed",
              "ml_lower": 5770975.34,
              "ml_upper": 6977354.0,
              "auto_lower": 5770975.34,
              "auto_upper": 6847666.500000001,
              "refseq_lower": 5822436.38,
              "refseq_upper": 6947778.9799999995
            },
            {
              "metric": "GC_Content",
              "lower": 55.04,
              "upper": 56.19,
              "final_lower": 55.04,
              "final_upper": 56.19,
              "warn_lower": 55.21,
              "warn_upper": 56.08,
              "source": "computed",
              "ml_lower": 55.04,
              "ml_upper": 56.183,
              "auto_lower": 55.060531999999995,
              "auto_upper": 56.1396,
              "refseq_lower": 55.078817,
              "refseq_upper": 56.148002
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6900.0,
              "final_lower": 5300.0,
              "final_upper": 6900.0,
              "warn_lower": 5400.0,
              "warn_upper": 6500.0,
              "source": "computed",
              "ml_lower": 5333.58,
              "ml_upper": 6827.0,
              "auto_lower": 5333.58,
              "auto_upper": 6613.620000000001,
              "refseq_lower": 5503.98,
              "refseq_upper": 6779.119999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.74,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.0991,
              "refseq_upper": 99.80189999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.06,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 3.41,
              "auto_lower": 0.1058,
              "auto_upper": 3.41,
              "refseq_lower": 0.11130000000000001,
              "refseq_upper": 2.136299999999997
            },
            {
              "metric": "N50",
              "lower": 53000.0,
              "upper": null,
              "final_lower": 53000.0,
              "final_upper": null,
              "warn_lower": 72000.0,
              "warn_upper": 421915.0,
              "source": "computed",
              "ml_lower": 53190.12,
              "ml_upper": 421915.0,
              "auto_lower": 53190.12,
              "auto_upper": 421915.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 380.0,
              "final_lower": null,
              "final_upper": 380.0,
              "warn_lower": 61.0,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 61.0,
              "ml_upper": 374.42,
              "auto_lower": 61.0,
              "auto_upper": 374.4200000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 192116.04,
              "warn_upper": 1164230.0,
              "source": "computed",
              "ml_lower": 192116.04,
              "ml_upper": 1164230.0,
              "auto_lower": 192116.04,
              "auto_upper": 1164230.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1717,
            "refseq_count": 115,
            "final_count": 1717,
            "filtered_out_count": 0,
            "pass_count": 1526,
            "warn_count": 255,
            "fail_count": 100
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_ornithinolytica": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5300000.0,
              "upper": 6700000.0,
              "final_lower": 5300000.0,
              "final_upper": 6700000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6300000.0,
              "source": "computed",
              "ml_lower": 5337752.7,
              "ml_upper": 6679661.0,
              "auto_lower": 5337752.7,
              "auto_upper": 6434289.6,
              "refseq_lower": 5398190.93,
              "refseq_upper": 6632193.8
            },
            {
              "metric": "GC_Content",
              "lower": 54.71,
              "upper": 57.47,
              "final_lower": 54.71,
              "final_upper": 57.47,
              "warn_lower": 54.92,
              "warn_upper": 55.94,
              "source": "computed",
              "ml_lower": 54.713,
              "ml_upper": 57.4667,
              "auto_lower": 54.713005,
              "auto_upper": 55.98642,
              "refseq_lower": 54.771186,
              "refseq_upper": 56.950646000000006
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4800.0,
              "upper": 6600.0,
              "final_lower": 4800.0,
              "final_upper": 6600.0,
              "warn_lower": 4900.0,
              "warn_upper": 6200.0,
              "source": "computed",
              "ml_lower": 4874.8,
              "ml_upper": 6562.0,
              "auto_lower": 4874.8,
              "auto_upper": 6262.05,
              "refseq_lower": 5068.97,
              "refseq_upper": 6470.26
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.94,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.2304,
              "refseq_upper": 99.51
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.06,
              "warn_upper": 4.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 3.75,
              "auto_lower": 0.6375000000000001,
              "auto_upper": 3.7459999999999947,
              "refseq_lower": 0.0765,
              "refseq_upper": 2.0667
            },
            {
              "metric": "N50",
              "lower": 84000.0,
              "upper": null,
              "final_lower": 84000.0,
              "final_upper": null,
              "warn_lower": 107000.0,
              "warn_upper": 822604.75,
              "source": "computed",
              "ml_lower": 84892.6,
              "ml_upper": 822604.75,
              "auto_lower": 84892.6,
              "auto_upper": 822604.7499999983,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 41.8,
              "warn_upper": 290.0,
              "source": "computed",
              "ml_lower": 41.8,
              "ml_upper": 324.6,
              "auto_lower": 41.8,
              "auto_upper": 324.59999999999945,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 249535.95,
              "warn_upper": 2147008.6,
              "source": "computed",
              "ml_lower": 249535.95,
              "ml_upper": 2147008.6,
              "auto_lower": 249535.95,
              "auto_upper": 2147008.5999999964,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 591,
            "refseq_count": 67,
            "final_count": 591,
            "filtered_out_count": 0,
            "pass_count": 558,
            "warn_count": 57,
            "fail_count": 41
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_oxytoca": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5300000.0,
              "upper": 6800000.0,
              "final_lower": 5300000.0,
              "final_upper": 6800000.0,
              "warn_lower": 5700000.0,
              "warn_upper": 6600000.0,
              "source": "computed",
              "ml_lower": 5394761.0,
              "ml_upper": 6736859.0,
              "auto_lower": 5663940.375,
              "auto_upper": 6600876.225000001,
              "refseq_lower": 5503816.01,
              "refseq_upper": 6718055.11
            },
            {
              "metric": "GC_Content",
              "lower": 54.11,
              "upper": 55.33,
              "final_lower": 54.11,
              "final_upper": 55.33,
              "warn_lower": 54.57,
              "warn_upper": 55.29,
              "source": "computed",
              "ml_lower": 54.115,
              "ml_upper": 55.3252,
              "auto_lower": 54.4535025,
              "auto_upper": 55.3252,
              "refseq_lower": 54.128216,
              "refseq_upper": 55.256861
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5000.0,
              "upper": 6600.0,
              "final_lower": 5000.0,
              "final_upper": 6600.0,
              "warn_lower": 5200.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 5071.0,
              "ml_upper": 6504.0,
              "auto_lower": 5180.275,
              "auto_upper": 6312.3,
              "refseq_lower": 5159.5,
              "refseq_upper": 6491.61
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.13,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.2421,
              "refseq_upper": 99.5823
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.15,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.15,
              "ml_upper": 7.61,
              "auto_lower": 0.1485,
              "auto_upper": 2.4,
              "refseq_lower": 0.3377,
              "refseq_upper": 6.376899999999994
            },
            {
              "metric": "N50",
              "lower": 64000.0,
              "upper": null,
              "final_lower": 64000.0,
              "final_upper": null,
              "warn_lower": 106000.0,
              "warn_upper": 597994.33,
              "source": "computed",
              "ml_lower": 64912.3,
              "ml_upper": 597994.33,
              "auto_lower": 64912.299999999996,
              "auto_upper": 597994.3250000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 360.0,
              "final_lower": null,
              "final_upper": 360.0,
              "warn_lower": 53.85,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 53.85,
              "ml_upper": 350.28,
              "auto_lower": 53.85,
              "auto_upper": 350.2750000000017,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 184914.05,
              "warn_upper": 1703932.78,
              "source": "computed",
              "ml_lower": 184914.05,
              "ml_upper": 1703932.78,
              "auto_lower": 184914.05,
              "auto_upper": 1703932.775000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1086,
            "refseq_count": 60,
            "final_count": 1086,
            "filtered_out_count": 0,
            "pass_count": 980,
            "warn_count": 150,
            "fail_count": 49
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_pasteurii": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5800000.0,
              "upper": 6500000.0,
              "final_lower": 5800000.0,
              "final_upper": 6500000.0,
              "warn_lower": 5800000.0,
              "warn_upper": 6500000.0,
              "source": "computed",
              "ml_lower": 5845210.0,
              "ml_upper": 6497593.0,
              "auto_lower": 5845210.0,
              "auto_upper": 6497593.0,
              "refseq_lower": 5897538.0,
              "refseq_upper": 6650500.0
            },
            {
              "metric": "GC_Content",
              "lower": 54.95,
              "upper": 55.46,
              "final_lower": 54.95,
              "final_upper": 55.46,
              "warn_lower": 54.95,
              "warn_upper": 55.46,
              "source": "computed",
              "ml_lower": 54.9505,
              "ml_upper": 55.4514,
              "auto_lower": 54.95051783021805,
              "auto_upper": 55.45136958295767,
              "refseq_lower": 54.9089,
              "refseq_upper": 55.44
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6200.0,
              "final_lower": 5300.0,
              "final_upper": 6200.0,
              "warn_lower": 5300.0,
              "warn_upper": 6200.0,
              "source": "computed",
              "ml_lower": 5388.0,
              "ml_upper": 6196.0,
              "auto_lower": 5388.0,
              "auto_upper": 6195.915,
              "refseq_lower": 5521.36,
              "refseq_upper": 6509.575
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.52,
              "refseq_upper": 99.99
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.23,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.23,
              "ml_upper": 1.85,
              "auto_lower": 0.23,
              "auto_upper": 1.85,
              "refseq_lower": 0.42,
              "refseq_upper": 0.93
            },
            {
              "metric": "N50",
              "lower": 216000.0,
              "upper": null,
              "final_lower": 216000.0,
              "final_upper": null,
              "warn_lower": 216000.0,
              "warn_upper": 489082.0,
              "source": "computed",
              "ml_lower": 216678.0,
              "ml_upper": 489082.0,
              "auto_lower": 216678.0,
              "auto_upper": 489082.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 42.0,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 42.0,
              "ml_upper": 109.0,
              "auto_lower": 42.0,
              "auto_upper": 109.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 474932.0,
              "warn_upper": 1456430.0,
              "source": "computed",
              "ml_lower": 474932.0,
              "ml_upper": 1456430.0,
              "auto_lower": 474932.0,
              "auto_upper": 1456430.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 18,
            "refseq_count": 18,
            "final_count": 18,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_planticola": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 6800000.0,
              "final_lower": 5200000.0,
              "final_upper": 6800000.0,
              "warn_lower": 5400000.0,
              "warn_upper": 6400000.0,
              "source": "computed",
              "ml_lower": 5229639.0,
              "ml_upper": 6745406.0,
              "auto_lower": 5410183.05,
              "auto_upper": 6398601.625,
              "refseq_lower": 5270331.34,
              "refseq_upper": 6703338.5200000005
            },
            {
              "metric": "GC_Content",
              "lower": 54.77,
              "upper": 55.94,
              "final_lower": 54.77,
              "final_upper": 55.94,
              "warn_lower": 54.98,
              "warn_upper": 55.92,
              "source": "computed",
              "ml_lower": 54.7763,
              "ml_upper": 55.9323,
              "auto_lower": 54.91819,
              "auto_upper": 55.93226,
              "refseq_lower": 54.798985,
              "refseq_upper": 55.873971
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 6700.0,
              "final_lower": 4900.0,
              "final_upper": 6700.0,
              "warn_lower": 4900.0,
              "warn_upper": 6200.0,
              "source": "computed",
              "ml_lower": 4921.0,
              "ml_upper": 6628.0,
              "auto_lower": 4958.5,
              "auto_upper": 6274.5,
              "refseq_lower": 4961.95,
              "refseq_upper": 6574.05
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.77,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.8779,
              "refseq_upper": 99.6314
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.22,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.22,
              "ml_upper": 3.01,
              "auto_lower": 0.2185,
              "auto_upper": 2.7504999999999984,
              "refseq_lower": 1.0529,
              "refseq_upper": 2.9619
            },
            {
              "metric": "N50",
              "lower": 70000.0,
              "upper": null,
              "final_lower": 70000.0,
              "final_upper": null,
              "warn_lower": 93000.0,
              "warn_upper": 618195.7,
              "source": "computed",
              "ml_lower": 70996.48,
              "ml_upper": 618195.7,
              "auto_lower": 70996.475,
              "auto_upper": 618195.6999999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 410.0,
              "final_lower": null,
              "final_upper": 410.0,
              "warn_lower": 45.7,
              "warn_upper": 330.0,
              "source": "computed",
              "ml_lower": 45.7,
              "ml_upper": 401.22,
              "auto_lower": 45.7,
              "auto_upper": 401.22499999999974,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 225949.92,
              "warn_upper": 1871269.65,
              "source": "computed",
              "ml_lower": 225949.92,
              "ml_upper": 1871269.65,
              "auto_lower": 225949.925,
              "auto_upper": 1871269.649999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 286,
            "refseq_count": 27,
            "final_count": 286,
            "filtered_out_count": 0,
            "pass_count": 268,
            "warn_count": 29,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_pneumoniae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6400000.0,
              "final_lower": 4900000.0,
              "final_upper": 6400000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 6000000.0,
              "source": "computed",
              "ml_lower": 4996433.0,
              "ml_upper": 6374553.0,
              "auto_lower": 5166485.825,
              "auto_upper": 5997932.225,
              "refseq_lower": 5184714.85,
              "refseq_upper": 6178907.99
            },
            {
              "metric": "GC_Content",
              "lower": 55.89,
              "upper": 58.02,
              "final_lower": 55.89,
              "final_upper": 58.02,
              "warn_lower": 56.6,
              "warn_upper": 57.52,
              "source": "computed",
              "ml_lower": 55.8906,
              "ml_upper": 58.0198,
              "auto_lower": 56.520692499999996,
              "auto_upper": 57.6170225,
              "refseq_lower": 56.247400999999996,
              "refseq_upper": 57.6260475
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4800.0,
              "upper": 6500.0,
              "final_lower": 4800.0,
              "final_upper": 6500.0,
              "warn_lower": 4800.0,
              "warn_upper": 5700.0,
              "source": "computed",
              "ml_lower": 4801.0,
              "ml_upper": 6490.0,
              "auto_lower": 4801.0,
              "auto_upper": 5780.0,
              "refseq_lower": 5035.785,
              "refseq_upper": 6215.13
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.57,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.37435,
              "refseq_upper": 99.08
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.02,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 4.14,
              "auto_lower": 0.02,
              "auto_upper": 1.830749999999971,
              "refseq_lower": 0.19,
              "refseq_upper": 2.6256500000000007
            },
            {
              "metric": "N50",
              "lower": 58000.0,
              "upper": null,
              "final_lower": 58000.0,
              "final_upper": null,
              "warn_lower": 97000.0,
              "warn_upper": 550083.8,
              "source": "computed",
              "ml_lower": 58735.08,
              "ml_upper": 550083.8,
              "auto_lower": 58735.075,
              "auto_upper": 550083.799999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 350.0,
              "final_lower": null,
              "final_upper": 350.0,
              "warn_lower": 53.0,
              "warn_upper": 270.0,
              "source": "computed",
              "ml_lower": 53.0,
              "ml_upper": 349.0,
              "auto_lower": 53.0,
              "auto_upper": 349.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 195153.1,
              "warn_upper": 1526463.2,
              "source": "computed",
              "ml_lower": 195153.1,
              "ml_upper": 1526463.2,
              "auto_lower": 195153.1,
              "auto_upper": 1526463.1999999979,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 67586,
            "refseq_count": 3288,
            "final_count": 67586,
            "filtered_out_count": 0,
            "pass_count": 62061,
            "warn_count": 7710,
            "fail_count": 2920
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_quasipneumoniae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 6300000.0,
              "final_lower": 4500000.0,
              "final_upper": 6300000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 6000000.0,
              "source": "computed",
              "ml_lower": 4579303.0,
              "ml_upper": 6212153.0,
              "auto_lower": 5029523.96,
              "auto_upper": 6039108.88,
              "refseq_lower": 5021842.125,
              "refseq_upper": 6209976.0
            },
            {
              "metric": "GC_Content",
              "lower": 56.49,
              "upper": 58.64,
              "final_lower": 56.49,
              "final_upper": 58.64,
              "warn_lower": 57.0,
              "warn_upper": 58.26,
              "source": "computed",
              "ml_lower": 56.4969,
              "ml_upper": 58.6333,
              "auto_lower": 56.874576,
              "auto_upper": 58.385304,
              "refseq_lower": 56.5900875,
              "refseq_upper": 58.2783125
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 6300.0,
              "final_lower": 4400.0,
              "final_upper": 6300.0,
              "warn_lower": 4600.0,
              "warn_upper": 5700.0,
              "source": "computed",
              "ml_lower": 4470.0,
              "ml_upper": 6246.0,
              "auto_lower": 4644.96,
              "auto_upper": 5828.0,
              "refseq_lower": 4831.05,
              "refseq_upper": 6200.76
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.07,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.14874999999999,
              "refseq_upper": 99.37625
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.94,
              "auto_lower": 0.0,
              "auto_upper": 1.17,
              "refseq_lower": 0.31,
              "refseq_upper": 2.3975
            },
            {
              "metric": "N50",
              "lower": 51000.0,
              "upper": null,
              "final_lower": 51000.0,
              "final_upper": null,
              "warn_lower": 92000.0,
              "warn_upper": 1234605.68,
              "source": "computed",
              "ml_lower": 51385.72,
              "ml_upper": 1234605.68,
              "auto_lower": 51385.72,
              "auto_upper": 1234605.68,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 390.0,
              "final_lower": null,
              "final_upper": 390.0,
              "warn_lower": 35.0,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 35.0,
              "ml_upper": 380.56,
              "auto_lower": 35.0,
              "auto_upper": 380.5599999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 180468.0,
              "warn_upper": 2515582.4,
              "source": "computed",
              "ml_lower": 180468.0,
              "ml_upper": 2515582.4,
              "auto_lower": 180468.0,
              "auto_upper": 2515582.4,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 3393,
            "refseq_count": 176,
            "final_count": 3393,
            "filtered_out_count": 0,
            "pass_count": 3096,
            "warn_count": 435,
            "fail_count": 124
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 6300000.0,
              "final_lower": 4500000.0,
              "final_upper": 6300000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 6000000.0,
              "source": "computed",
              "ml_lower": 4579303.0,
              "ml_upper": 6212153.0,
              "auto_lower": 5035959.595,
              "auto_upper": 6048719.31,
              "refseq_lower": 5021842.125,
              "refseq_upper": 6209976.0
            },
            {
              "metric": "GC_Content",
              "lower": 56.49,
              "upper": 58.64,
              "final_lower": 56.49,
              "final_upper": 58.64,
              "warn_lower": 56.98,
              "warn_upper": 58.25,
              "source": "computed",
              "ml_lower": 56.4969,
              "ml_upper": 58.6333,
              "auto_lower": 56.8116605,
              "auto_upper": 58.3161105,
              "refseq_lower": 56.5900875,
              "refseq_upper": 58.2783125
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 6300.0,
              "final_lower": 4400.0,
              "final_upper": 6300.0,
              "warn_lower": 4700.0,
              "warn_upper": 5700.0,
              "source": "computed",
              "ml_lower": 4470.0,
              "ml_upper": 6246.0,
              "auto_lower": 4664.895,
              "auto_upper": 5779.47,
              "refseq_lower": 4833.125,
              "refseq_upper": 6200.5
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.07,
              "ml_upper": 100.0,
              "auto_lower": 99.98895,
              "auto_upper": 100.0,
              "refseq_lower": 97.14874999999999,
              "refseq_upper": 99.37625
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.94,
              "auto_lower": 0.0,
              "auto_upper": 1.5421000000000005,
              "refseq_lower": 0.31,
              "refseq_upper": 2.3975
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 60000.0,
              "warn_upper": 1231691.2,
              "source": "computed",
              "ml_lower": 33680.0,
              "ml_upper": 1231691.2,
              "auto_lower": 33680.0,
              "auto_upper": 1231691.205,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 390.0,
              "final_lower": null,
              "final_upper": 390.0,
              "warn_lower": 18.0,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 18.0,
              "ml_upper": 387.32,
              "auto_lower": 18.0,
              "auto_upper": 387.31500000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 117364.58,
              "warn_upper": 2443736.94,
              "source": "computed",
              "ml_lower": 117364.58,
              "ml_upper": 2443736.94,
              "auto_lower": 117364.58,
              "auto_upper": 2443736.9400000004,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1980,
            "refseq_count": 176,
            "final_count": 1980,
            "filtered_out_count": 0,
            "pass_count": 1790,
            "warn_count": 228,
            "fail_count": 74
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_quasivariicola": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5700000.0,
              "upper": 5800000.0,
              "final_lower": 5700000.0,
              "final_upper": 5800000.0,
              "warn_lower": 5700000.0,
              "warn_upper": 5800000.0,
              "source": "computed",
              "ml_lower": 5751340.0,
              "ml_upper": 5794997.0,
              "auto_lower": 5751340.0,
              "auto_upper": 5794993.67,
              "refseq_lower": 5876846.0,
              "refseq_upper": 5946706.0
            },
            {
              "metric": "GC_Content",
              "lower": 56.68,
              "upper": 56.7,
              "final_lower": 56.68,
              "final_upper": 56.7,
              "warn_lower": 56.68,
              "warn_upper": 56.7,
              "source": "computed",
              "ml_lower": 56.6841,
              "ml_upper": 56.6921,
              "auto_lower": 56.684139656830155,
              "auto_upper": 56.692057850866064,
              "refseq_lower": 56.6582,
              "refseq_upper": 56.6776
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5400.0,
              "upper": 5600.0,
              "final_lower": 5400.0,
              "final_upper": 5600.0,
              "warn_lower": 5400.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 5444.0,
              "ml_upper": 5560.0,
              "auto_lower": 5444.0,
              "auto_upper": 5559.97,
              "refseq_lower": 5760.12,
              "refseq_upper": 6061.855
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.92,
              "refseq_upper": 98.67
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.31,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.31,
              "ml_upper": 0.39,
              "auto_lower": 0.31,
              "auto_upper": 0.39,
              "refseq_lower": 0.97,
              "refseq_upper": 1.4
            },
            {
              "metric": "N50",
              "lower": 152000.0,
              "upper": null,
              "final_lower": 152000.0,
              "final_upper": null,
              "warn_lower": 152000.0,
              "warn_upper": 157050.0,
              "source": "computed",
              "ml_lower": 152835.0,
              "ml_upper": 157050.0,
              "auto_lower": 152835.0,
              "auto_upper": 157050.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 106.0,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 106.0,
              "ml_upper": 118.0,
              "auto_lower": 106.03,
              "auto_upper": 118.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 413438.0,
              "warn_upper": 514832.0,
              "source": "computed",
              "ml_lower": 413438.0,
              "ml_upper": 514832.0,
              "auto_lower": 413438.0,
              "auto_upper": 514832.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 4,
            "refseq_count": 4,
            "final_count": 4,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_spallanzanii": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5800000.0,
              "upper": 6300000.0,
              "final_lower": 5800000.0,
              "final_upper": 6300000.0,
              "warn_lower": 5800000.0,
              "warn_upper": 6300000.0,
              "source": "computed",
              "ml_lower": 5831599.0,
              "ml_upper": 6238369.0,
              "auto_lower": 5837254.6,
              "auto_upper": 6238018.3,
              "refseq_lower": 5837254.6,
              "refseq_upper": 6238018.3
            },
            {
              "metric": "GC_Content",
              "lower": 53.19,
              "upper": 53.53,
              "final_lower": 53.19,
              "final_upper": 53.53,
              "warn_lower": 53.2,
              "warn_upper": 53.52,
              "source": "computed",
              "ml_lower": 53.1908,
              "ml_upper": 53.5278,
              "auto_lower": 53.19405176180906,
              "auto_upper": 53.52562233946744,
              "refseq_lower": 53.194073,
              "refseq_upper": 53.52561
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5500.0,
              "upper": 5900.0,
              "final_lower": 5500.0,
              "final_upper": 5900.0,
              "warn_lower": 5500.0,
              "warn_upper": 5900.0,
              "source": "computed",
              "ml_lower": 5549.0,
              "ml_upper": 5900.0,
              "auto_lower": 5552.24,
              "auto_upper": 5897.69,
              "refseq_lower": 5681.22,
              "refseq_upper": 6025.38
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.121,
              "refseq_upper": 98.16
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 1.37,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 1.37,
              "ml_upper": 2.47,
              "auto_lower": 1.3712000000000002,
              "auto_upper": 2.4538,
              "refseq_lower": 1.7021,
              "refseq_upper": 2.1496999999999997
            },
            {
              "metric": "N50",
              "lower": 103000.0,
              "upper": null,
              "final_lower": 103000.0,
              "final_upper": null,
              "warn_lower": 110000.0,
              "warn_upper": 541680.0,
              "source": "computed",
              "ml_lower": 103978.0,
              "ml_upper": 541680.0,
              "auto_lower": 105320.17,
              "auto_upper": 537537.99,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 170.0,
              "final_lower": null,
              "final_upper": 170.0,
              "warn_lower": 40.0,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 40.0,
              "ml_upper": 168.0,
              "auto_lower": 40.21,
              "auto_upper": 166.14,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 325022.0,
              "warn_upper": 1223321.0,
              "source": "computed",
              "ml_lower": 325022.0,
              "ml_upper": 1223321.0,
              "auto_lower": 326578.34,
              "auto_upper": 1211897.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 7,
            "refseq_count": 7,
            "final_count": 7,
            "filtered_out_count": 0,
            "pass_count": 15,
            "warn_count": 1,
            "fail_count": 4
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Klebsiella_variicola": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 6500000.0,
              "final_lower": 5200000.0,
              "final_upper": 6500000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6200000.0,
              "source": "computed",
              "ml_lower": 5279245.0,
              "ml_upper": 6498364.0,
              "auto_lower": 5335982.815,
              "auto_upper": 6171778.45,
              "refseq_lower": 5279256.28,
              "refseq_upper": 6235354.82
            },
            {
              "metric": "GC_Content",
              "lower": 55.5,
              "upper": 58.0,
              "final_lower": 55.5,
              "final_upper": 58.0,
              "warn_lower": 56.59,
              "warn_upper": 57.62,
              "source": "pinned",
              "ml_lower": 56.26,
              "ml_upper": 57.6735,
              "auto_lower": 56.447317500000004,
              "auto_upper": 57.673462,
              "refseq_lower": 56.40053,
              "refseq_upper": 57.636946
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 6500.0,
              "final_lower": 4900.0,
              "final_upper": 6500.0,
              "warn_lower": 4900.0,
              "warn_upper": 6000.0,
              "source": "computed",
              "ml_lower": 4951.0,
              "ml_upper": 6440.0,
              "auto_lower": 4951.0,
              "auto_upper": 5981.66,
              "refseq_lower": 5097.0,
              "refseq_upper": 6226.620000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.06,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.201,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.64,
              "auto_lower": 0.03,
              "auto_upper": 1.6565999999999985,
              "refseq_lower": 0.298,
              "refseq_upper": 2.1418000000000013
            },
            {
              "metric": "N50",
              "lower": 62000.0,
              "upper": null,
              "final_lower": 62000.0,
              "final_upper": null,
              "warn_lower": 98000.0,
              "warn_upper": 855291.87,
              "source": "computed",
              "ml_lower": 62956.54,
              "ml_upper": 855291.87,
              "auto_lower": 62956.545,
              "auto_upper": 855291.8699999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 350.0,
              "final_lower": null,
              "final_upper": 350.0,
              "warn_lower": 39.0,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 39.0,
              "ml_upper": 349.16,
              "auto_lower": 39.0,
              "auto_upper": 349.16499999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 205087.28,
              "warn_upper": 2217914.25,
              "source": "computed",
              "ml_lower": 205087.28,
              "ml_upper": 2217914.25,
              "auto_lower": 205087.285,
              "auto_upper": 2217914.2499999995,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2768,
            "refseq_count": 189,
            "final_count": 2768,
            "filtered_out_count": 0,
            "pass_count": 2574,
            "warn_count": 310,
            "fail_count": 111
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 6500000.0,
              "final_lower": 5200000.0,
              "final_upper": 6500000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6200000.0,
              "source": "computed",
              "ml_lower": 5279245.0,
              "ml_upper": 6498364.0,
              "auto_lower": 5318016.495,
              "auto_upper": 6257647.184999996,
              "refseq_lower": 5279256.28,
              "refseq_upper": 6235354.82
            },
            {
              "metric": "GC_Content",
              "lower": 55.5,
              "upper": 58.0,
              "final_lower": 55.5,
              "final_upper": 58.0,
              "warn_lower": 56.45,
              "warn_upper": 57.62,
              "source": "pinned",
              "ml_lower": 56.26,
              "ml_upper": 57.6812,
              "auto_lower": 56.418499499999996,
              "auto_upper": 57.6811715,
              "refseq_lower": 56.40053,
              "refseq_upper": 57.636946
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 6500.0,
              "final_lower": 4900.0,
              "final_upper": 6500.0,
              "warn_lower": 4900.0,
              "warn_upper": 6000.0,
              "source": "computed",
              "ml_lower": 4948.02,
              "ml_upper": 6440.0,
              "auto_lower": 4948.02,
              "auto_upper": 6053.49,
              "refseq_lower": 5097.0,
              "refseq_upper": 6226.620000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.06,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 98.201,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.64,
              "auto_lower": 0.03,
              "auto_upper": 2.14,
              "refseq_lower": 0.298,
              "refseq_upper": 2.1418000000000013
            },
            {
              "metric": "N50",
              "lower": 35000.0,
              "upper": null,
              "final_lower": 35000.0,
              "final_upper": null,
              "warn_lower": 68000.0,
              "warn_upper": 996645.68,
              "source": "computed",
              "ml_lower": 35683.48,
              "ml_upper": 996645.68,
              "auto_lower": 35683.485,
              "auto_upper": 996645.6849999989,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 320.0,
              "final_lower": null,
              "final_upper": 320.0,
              "warn_lower": 17.0,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 17.0,
              "ml_upper": 315.49,
              "auto_lower": 17.0,
              "auto_upper": 315.4899999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 133650.12,
              "warn_upper": 2627437.49,
              "source": "computed",
              "ml_lower": 133650.12,
              "ml_upper": 2627437.49,
              "auto_lower": 133650.115,
              "auto_upper": 2627437.4899999993,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1952,
            "refseq_count": 189,
            "final_count": 1952,
            "filtered_out_count": 0,
            "pass_count": 1826,
            "warn_count": 146,
            "fail_count": 78
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Lacticaseibacillus_paracasei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 3500000.0,
              "final_lower": 2600000.0,
              "final_upper": 3500000.0,
              "warn_lower": 2600000.0,
              "warn_upper": 3300000.0,
              "source": "computed",
              "ml_lower": 2651542.35,
              "ml_upper": 3434047.0,
              "auto_lower": 2651542.35,
              "auto_upper": 3268537.5000000005,
              "refseq_lower": 2852624.12,
              "refseq_upper": 3364547.87
            },
            {
              "metric": "GC_Content",
              "lower": 45.96,
              "upper": 46.65,
              "final_lower": 45.96,
              "final_upper": 46.65,
              "warn_lower": 46.1,
              "warn_upper": 46.52,
              "source": "computed",
              "ml_lower": 45.9646,
              "ml_upper": 46.6405,
              "auto_lower": 46.055040000000005,
              "auto_upper": 46.568085,
              "refseq_lower": 45.9646,
              "refseq_upper": 46.613416
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2500.0,
              "upper": 3400.0,
              "final_lower": 2500.0,
              "final_upper": 3400.0,
              "warn_lower": 2600.0,
              "warn_upper": 3200.0,
              "source": "computed",
              "ml_lower": 2587.05,
              "ml_upper": 3355.0,
              "auto_lower": 2587.05,
              "auto_upper": 3244.95,
              "refseq_lower": 2774.1,
              "refseq_upper": 3311.08
            },
            {
              "metric": "Completeness_Specific",
              "lower": 85.0,
              "upper": null,
              "final_lower": 85.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 85.06,
              "ml_upper": 100.0,
              "auto_lower": 99.316,
              "auto_upper": 100.0,
              "refseq_lower": 85.1271,
              "refseq_upper": 98.0957
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 14.0,
              "final_lower": null,
              "final_upper": 14.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 13.09,
              "auto_lower": 0.0,
              "auto_upper": 0.95,
              "refseq_lower": 1.7831000000000001,
              "refseq_upper": 13.0656
            },
            {
              "metric": "N50",
              "lower": 29000.0,
              "upper": null,
              "final_lower": 29000.0,
              "final_upper": null,
              "warn_lower": 39000.0,
              "warn_upper": 266150.0,
              "source": "computed",
              "ml_lower": 29856.2,
              "ml_upper": 266150.0,
              "auto_lower": 29856.2,
              "auto_upper": 266150.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 310.0,
              "final_lower": null,
              "final_upper": 310.0,
              "warn_lower": 49.0,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 49.0,
              "ml_upper": 306.2,
              "auto_lower": 49.0,
              "auto_upper": 306.2000000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 94854.1,
              "warn_upper": 640737.75,
              "source": "computed",
              "ml_lower": 94854.1,
              "ml_upper": 640737.75,
              "auto_lower": 94854.1,
              "auto_upper": 640737.7500000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 611,
            "refseq_count": 123,
            "final_count": 611,
            "filtered_out_count": 0,
            "pass_count": 564,
            "warn_count": 80,
            "fail_count": 27
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Lacticaseibacillus_rhamnosus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2800000.0,
              "upper": 3300000.0,
              "final_lower": 2800000.0,
              "final_upper": 3300000.0,
              "warn_lower": 2800000.0,
              "warn_upper": 3100000.0,
              "source": "computed",
              "ml_lower": 2822309.89,
              "ml_upper": 3251532.0,
              "auto_lower": 2822309.89,
              "auto_upper": 3105598.145,
              "refseq_lower": 2875037.12,
              "refseq_upper": 3191444.865
            },
            {
              "metric": "GC_Content",
              "lower": 46.51,
              "upper": 46.9,
              "final_lower": 46.51,
              "final_upper": 46.9,
              "warn_lower": 46.58,
              "warn_upper": 46.75,
              "source": "computed",
              "ml_lower": 46.5197,
              "ml_upper": 46.8913,
              "auto_lower": 46.519658,
              "auto_upper": 46.7506195,
              "refseq_lower": 46.595329,
              "refseq_upper": 46.880193500000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 3100.0,
              "final_lower": 2600.0,
              "final_upper": 3100.0,
              "warn_lower": 2600.0,
              "warn_upper": 3000.0,
              "source": "computed",
              "ml_lower": 2652.7,
              "ml_upper": 3081.0,
              "auto_lower": 2652.7,
              "auto_upper": 3000.18,
              "refseq_lower": 2682.91,
              "refseq_upper": 3031.53
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.44,
              "ml_upper": 100.0,
              "auto_lower": 99.93,
              "auto_upper": 100.0,
              "refseq_lower": 96.51275,
              "refseq_upper": 99.33
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.04,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 2.21,
              "auto_lower": 0.04,
              "auto_upper": 0.9011999999999989,
              "refseq_lower": 0.24,
              "refseq_upper": 2.0208500000000003
            },
            {
              "metric": "N50",
              "lower": 50000.0,
              "upper": null,
              "final_lower": 50000.0,
              "final_upper": null,
              "warn_lower": 67000.0,
              "warn_upper": 722224.0,
              "source": "computed",
              "ml_lower": 50872.7,
              "ml_upper": 722224.0,
              "auto_lower": 50872.7,
              "auto_upper": 722224.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 19.0,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 19.0,
              "ml_upper": 177.13,
              "auto_lower": 19.0,
              "auto_upper": 177.13499999999988,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 166730.3,
              "warn_upper": 1064218.0,
              "source": "computed",
              "ml_lower": 166730.3,
              "ml_upper": 1064218.0,
              "auto_lower": 166730.305,
              "auto_upper": 1064218.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 598,
            "refseq_count": 98,
            "final_count": 598,
            "filtered_out_count": 0,
            "pass_count": 577,
            "warn_count": 40,
            "fail_count": 30
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Lactiplantibacillus_plantarum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2800000.0,
              "upper": 3700000.0,
              "final_lower": 2800000.0,
              "final_upper": 3700000.0,
              "warn_lower": 3000000.0,
              "warn_upper": 3600000.0,
              "source": "computed",
              "ml_lower": 2839103.0,
              "ml_upper": 3697306.0,
              "auto_lower": 2946669.93,
              "auto_upper": 3535010.75,
              "refseq_lower": 2977328.02,
              "refseq_upper": 3656093.504999999
            },
            {
              "metric": "GC_Content",
              "lower": 44.04,
              "upper": 45.13,
              "final_lower": 44.04,
              "final_upper": 45.13,
              "warn_lower": 44.13,
              "warn_upper": 45.06,
              "source": "computed",
              "ml_lower": 44.043,
              "ml_upper": 45.1255,
              "auto_lower": 44.043002,
              "auto_upper": 45.125505000000004,
              "refseq_lower": 44.110666,
              "refseq_upper": 44.942783
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2700.0,
              "upper": 3700.0,
              "final_lower": 2700.0,
              "final_upper": 3700.0,
              "warn_lower": 2900.0,
              "warn_upper": 3500.0,
              "source": "computed",
              "ml_lower": 2707.0,
              "ml_upper": 3619.0,
              "auto_lower": 2797.34,
              "auto_upper": 3495.59,
              "refseq_lower": 2832.195,
              "refseq_upper": 3542.074999999998
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.49,
              "ml_upper": 100.0,
              "auto_lower": 99.2811,
              "auto_upper": 100.0,
              "refseq_lower": 97.56224999999999,
              "refseq_upper": 99.35
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.3,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.3,
              "ml_upper": 3.02,
              "auto_lower": 0.3,
              "auto_upper": 2.0561000000000003,
              "refseq_lower": 1.2216500000000001,
              "refseq_upper": 2.7
            },
            {
              "metric": "N50",
              "lower": 54000.0,
              "upper": null,
              "final_lower": 54000.0,
              "final_upper": null,
              "warn_lower": 77000.0,
              "warn_upper": 549233.71,
              "source": "computed",
              "ml_lower": 54515.25,
              "ml_upper": 549233.71,
              "auto_lower": 54515.25,
              "auto_upper": 549233.71,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 250.0,
              "final_lower": null,
              "final_upper": 250.0,
              "warn_lower": 23.0,
              "warn_upper": 190.0,
              "source": "computed",
              "ml_lower": 23.0,
              "ml_upper": 247.44,
              "auto_lower": 23.0,
              "auto_upper": 247.44000000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 173703.96,
              "warn_upper": 853499.22,
              "source": "computed",
              "ml_lower": 173703.96,
              "ml_upper": 853499.22,
              "auto_lower": 173703.96,
              "auto_upper": 853499.22,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 679,
            "refseq_count": 370,
            "final_count": 679,
            "filtered_out_count": 0,
            "pass_count": 605,
            "warn_count": 64,
            "fail_count": 41
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Lactobacillus_acidophilus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2100000.0,
              "final_lower": 1900000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1954687.35,
              "ml_upper": 2092540.0,
              "auto_lower": 1954687.35,
              "auto_upper": 2015769.75,
              "refseq_lower": 1978857.665,
              "refseq_upper": 2085525.4
            },
            {
              "metric": "GC_Content",
              "lower": 34.57,
              "upper": 34.76,
              "final_lower": 34.57,
              "final_upper": 34.76,
              "warn_lower": 34.57,
              "warn_upper": 34.62,
              "source": "computed",
              "ml_lower": 34.5709,
              "ml_upper": 34.7594,
              "auto_lower": 34.570895,
              "auto_upper": 34.62035,
              "refseq_lower": 34.676593,
              "refseq_upper": 34.759022
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2100.0,
              "final_lower": 1800.0,
              "final_upper": 2100.0,
              "warn_lower": 1800.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1857.0,
              "ml_upper": 2048.0,
              "auto_lower": 1857.0,
              "auto_upper": 1919.0,
              "refseq_lower": 1921.0,
              "refseq_upper": 2037.6049999999998
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 92.64,
              "ml_upper": 99.99,
              "auto_lower": 99.95949999999999,
              "auto_upper": 99.99,
              "refseq_lower": 92.883,
              "refseq_upper": 96.81625
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.24,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.24,
              "ml_upper": 1.51,
              "auto_lower": 0.273,
              "auto_upper": 0.512999999999999,
              "refseq_lower": 0.24,
              "refseq_upper": 1.4100999999999988
            },
            {
              "metric": "N50",
              "lower": 115000.0,
              "upper": null,
              "final_lower": 115000.0,
              "final_upper": null,
              "warn_lower": 121000.0,
              "warn_upper": 237694.4,
              "source": "computed",
              "ml_lower": 115477.8,
              "ml_upper": 237694.4,
              "auto_lower": 115477.8,
              "auto_upper": 237694.39999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 60.0,
              "final_lower": null,
              "final_upper": 60.0,
              "warn_lower": 20.0,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 20.0,
              "ml_upper": 55.7,
              "auto_lower": 20.0,
              "auto_upper": 55.69999999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 203867.55,
              "warn_upper": 718866.0,
              "source": "computed",
              "ml_lower": 203867.55,
              "ml_upper": 718866.0,
              "auto_lower": 203867.55,
              "auto_upper": 718866.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 131,
            "refseq_count": 28,
            "final_count": 131,
            "filtered_out_count": 0,
            "pass_count": 123,
            "warn_count": 16,
            "fail_count": 7
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Lactobacillus_crispatus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2900000.0,
              "final_lower": 1900000.0,
              "final_upper": 2900000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 1918453.88,
              "ml_upper": 2882143.0,
              "auto_lower": 1918453.88,
              "auto_upper": 2581713.695,
              "refseq_lower": 2039435.62,
              "refseq_upper": 2871402.57
            },
            {
              "metric": "GC_Content",
              "lower": 36.39,
              "upper": 37.33,
              "final_lower": 36.39,
              "final_upper": 37.33,
              "warn_lower": 36.44,
              "warn_upper": 37.01,
              "source": "computed",
              "ml_lower": 36.3995,
              "ml_upper": 37.3254,
              "auto_lower": 36.399482,
              "auto_upper": 37.065077,
              "refseq_lower": 36.611382,
              "refseq_upper": 37.322884
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2900.0,
              "final_lower": 1800.0,
              "final_upper": 2900.0,
              "warn_lower": 1900.0,
              "warn_upper": 2700.0,
              "source": "computed",
              "ml_lower": 1898.6,
              "ml_upper": 2868.0,
              "auto_lower": 1898.605,
              "auto_upper": 2749.255,
              "refseq_lower": 2037.0,
              "refseq_upper": 2864.2599999999998
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.05,
              "ml_upper": 100.0,
              "auto_lower": 98.9054,
              "auto_upper": 100.0,
              "refseq_lower": 93.18769999999999,
              "refseq_upper": 98.28259999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.02,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 8.2,
              "auto_lower": 0.01535,
              "auto_upper": 1.3,
              "refseq_lower": 0.28700000000000003,
              "refseq_upper": 7.652599999999994
            },
            {
              "metric": "N50",
              "lower": 10000.0,
              "upper": null,
              "final_lower": 10000.0,
              "final_upper": null,
              "warn_lower": 17000.0,
              "warn_upper": 127151.54,
              "source": "computed",
              "ml_lower": 10152.24,
              "ml_upper": 127151.54,
              "auto_lower": 10152.235,
              "auto_upper": 127151.54000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 450.0,
              "final_lower": null,
              "final_upper": 450.0,
              "warn_lower": 52.14,
              "warn_upper": 430.0,
              "source": "computed",
              "ml_lower": 52.14,
              "ml_upper": 442.23,
              "auto_lower": 52.14,
              "auto_upper": 442.2300000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 49942.3,
              "warn_upper": 375579.0,
              "source": "computed",
              "ml_lower": 49942.3,
              "ml_upper": 375579.0,
              "auto_lower": 49942.3,
              "auto_upper": 375579.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 108,
            "refseq_count": 35,
            "final_count": 108,
            "filtered_out_count": 0,
            "pass_count": 102,
            "warn_count": 10,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Lactobacillus_gasseri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2200000.0,
              "final_lower": 1700000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2100000.0,
              "source": "computed",
              "ml_lower": 1790691.2,
              "ml_upper": 2176460.0,
              "auto_lower": 1790691.2,
              "auto_upper": 2080962.94,
              "refseq_lower": 1815580.04,
              "refseq_upper": 2171280.1
            },
            {
              "metric": "GC_Content",
              "lower": 34.66,
              "upper": 35.34,
              "final_lower": 34.66,
              "final_upper": 35.34,
              "warn_lower": 34.67,
              "warn_upper": 35.14,
              "source": "computed",
              "ml_lower": 34.6639,
              "ml_upper": 35.3332,
              "auto_lower": 34.663907,
              "auto_upper": 35.208967,
              "refseq_lower": 34.685672,
              "refseq_upper": 35.32517
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2300.0,
              "final_lower": 1600.0,
              "final_upper": 2300.0,
              "warn_lower": 1600.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1690.22,
              "ml_upper": 2262.0,
              "auto_lower": 1690.22,
              "auto_upper": 2042.12,
              "refseq_lower": 1771.33,
              "refseq_upper": 2253.64
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 91.0,
              "ml_upper": 99.99,
              "auto_lower": 99.7893,
              "auto_upper": 99.9939,
              "refseq_lower": 91.3553,
              "refseq_upper": 99.6156
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.94,
              "auto_lower": 0.0,
              "auto_upper": 0.47,
              "refseq_lower": 0.27,
              "refseq_upper": 4.8256000000000006
            },
            {
              "metric": "N50",
              "lower": 44000.0,
              "upper": null,
              "final_lower": 44000.0,
              "final_upper": null,
              "warn_lower": 47000.0,
              "warn_upper": 1042476.71,
              "source": "computed",
              "ml_lower": 44632.69,
              "ml_upper": 1042476.71,
              "auto_lower": 44632.69,
              "auto_upper": 1042476.71,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 12.61,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 12.61,
              "ml_upper": 140.78,
              "auto_lower": 12.61,
              "auto_upper": 140.78,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 108224.59,
              "warn_upper": 1042476.71,
              "source": "computed",
              "ml_lower": 108224.59,
              "ml_upper": 1042476.71,
              "auto_lower": 108224.59,
              "auto_upper": 1042476.71,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 123,
            "refseq_count": 23,
            "final_count": 123,
            "filtered_out_count": 0,
            "pass_count": 115,
            "warn_count": 7,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Lactobacillus_johnsonii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2300000.0,
              "final_lower": 1700000.0,
              "final_upper": 2300000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1715385.23,
              "ml_upper": 2215438.0,
              "auto_lower": 1715385.23,
              "auto_upper": 1988377.3649999998,
              "refseq_lower": 1765761.11,
              "refseq_upper": 2213228.52
            },
            {
              "metric": "GC_Content",
              "lower": 34.28,
              "upper": 35.18,
              "final_lower": 34.28,
              "final_upper": 35.18,
              "warn_lower": 34.29,
              "warn_upper": 34.66,
              "source": "computed",
              "ml_lower": 34.2892,
              "ml_upper": 35.1749,
              "auto_lower": 34.28924,
              "auto_upper": 34.655906,
              "refseq_lower": 34.412147999999995,
              "refseq_upper": 35.163837
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2300.0,
              "final_lower": 1700.0,
              "final_upper": 2300.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1725.86,
              "ml_upper": 2265.0,
              "auto_lower": 1725.865,
              "auto_upper": 2054.015,
              "refseq_lower": 1764.56,
              "refseq_upper": 2251.48
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.34,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 90.678,
              "refseq_upper": 97.7031
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.88,
              "auto_lower": 0.0,
              "auto_upper": 0.4802999999999997,
              "refseq_lower": 0.37,
              "refseq_upper": 6.6941000000000015
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 36000.0,
              "warn_upper": 133632.96,
              "source": "computed",
              "ml_lower": 31976.9,
              "ml_upper": 133632.96,
              "auto_lower": 31976.895,
              "auto_upper": 133632.96499999985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 160.0,
              "final_lower": null,
              "final_upper": 160.0,
              "warn_lower": 38.0,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 38.0,
              "ml_upper": 158.36,
              "auto_lower": 38.0,
              "auto_upper": 158.35999999999967,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 70478.0,
              "warn_upper": 335966.28,
              "source": "computed",
              "ml_lower": 70478.0,
              "ml_upper": 335966.28,
              "auto_lower": 70478.0,
              "auto_upper": 335966.284999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 198,
            "refseq_count": 27,
            "final_count": 198,
            "filtered_out_count": 0,
            "pass_count": 211,
            "warn_count": 9,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Lactobacillus_paragasseri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2200000.0,
              "final_lower": 1800000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1862133.42,
              "ml_upper": 2130665.45,
              "auto_lower": 1862133.415,
              "auto_upper": 2130665.45,
              "refseq_lower": 1938527.72,
              "refseq_upper": 2032921.115
            },
            {
              "metric": "GC_Content",
              "lower": 34.55,
              "upper": 35.07,
              "final_lower": 34.55,
              "final_upper": 35.07,
              "warn_lower": 34.61,
              "warn_upper": 34.99,
              "source": "computed",
              "ml_lower": 34.5547,
              "ml_upper": 35.0611,
              "auto_lower": 34.554672499999995,
              "auto_upper": 35.038818,
              "refseq_lower": 34.764627,
              "refseq_upper": 35.059707
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2200.0,
              "final_lower": 1700.0,
              "final_upper": 2200.0,
              "warn_lower": 1700.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1773.66,
              "ml_upper": 2179.32,
              "auto_lower": 1773.66,
              "auto_upper": 2179.324999999999,
              "refseq_lower": 1884.21,
              "refseq_upper": 2043.635
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.9,
              "ml_upper": 100.0,
              "auto_lower": 99.75075,
              "auto_upper": 100.0,
              "refseq_lower": 97.92835000000001,
              "refseq_upper": 99.35
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.78,
              "auto_lower": 0.01,
              "auto_upper": 0.7811499999999961,
              "refseq_lower": 0.16,
              "refseq_upper": 0.16
            },
            {
              "metric": "N50",
              "lower": 41000.0,
              "upper": null,
              "final_lower": 41000.0,
              "final_upper": null,
              "warn_lower": 45000.0,
              "warn_upper": 1131722.48,
              "source": "computed",
              "ml_lower": 41646.13,
              "ml_upper": 1131722.48,
              "auto_lower": 41646.13,
              "auto_upper": 1131722.4849999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 160.0,
              "final_lower": null,
              "final_upper": 160.0,
              "warn_lower": 11.42,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 11.42,
              "ml_upper": 152.4,
              "auto_lower": 11.415,
              "auto_upper": 152.39999999999918,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 119258.84,
              "warn_upper": 1131722.48,
              "source": "computed",
              "ml_lower": 119258.84,
              "ml_upper": 1131722.48,
              "auto_lower": 119258.84,
              "auto_upper": 1131722.4849999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 284,
            "refseq_count": 8,
            "final_count": 284,
            "filtered_out_count": 0,
            "pass_count": 268,
            "warn_count": 12,
            "fail_count": 25
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Lactococcus_lactis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 3000000.0,
              "final_lower": 2200000.0,
              "final_upper": 3000000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2800000.0,
              "source": "computed",
              "ml_lower": 2208218.0,
              "ml_upper": 2987858.0,
              "auto_lower": 2243617.39,
              "auto_upper": 2818029.9000000004,
              "refseq_lower": 2284362.75,
              "refseq_upper": 2903409.9000000004
            },
            {
              "metric": "GC_Content",
              "lower": 34.67,
              "upper": 35.48,
              "final_lower": 34.67,
              "final_upper": 35.48,
              "warn_lower": 34.72,
              "warn_upper": 35.3,
              "source": "computed",
              "ml_lower": 34.6739,
              "ml_upper": 35.4764,
              "auto_lower": 34.673854,
              "auto_upper": 35.385871,
              "refseq_lower": 34.843035,
              "refseq_upper": 35.462869999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 3100.0,
              "final_lower": 2100.0,
              "final_upper": 3100.0,
              "warn_lower": 2200.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2173.0,
              "ml_upper": 3087.0,
              "auto_lower": 2192.455,
              "auto_upper": 2918.03,
              "refseq_lower": 2243.4,
              "refseq_upper": 3012.7500000000005
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.77,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.078,
              "refseq_upper": 99.809
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.08,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.08,
              "ml_upper": 4.76,
              "auto_lower": 0.09,
              "auto_upper": 1.8492000000000008,
              "refseq_lower": 0.08,
              "refseq_upper": 4.171399999999993
            },
            {
              "metric": "N50",
              "lower": 15000.0,
              "upper": null,
              "final_lower": 15000.0,
              "final_upper": null,
              "warn_lower": 42000.0,
              "warn_upper": 432517.0,
              "source": "computed",
              "ml_lower": 15207.88,
              "ml_upper": 432517.0,
              "auto_lower": 15207.885,
              "auto_upper": 432517.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 280.0,
              "final_lower": null,
              "final_upper": 280.0,
              "warn_lower": 21.68,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 21.68,
              "ml_upper": 273.92,
              "auto_lower": 21.675,
              "auto_upper": 273.9200000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 79295.23,
              "warn_upper": 706409.98,
              "source": "computed",
              "ml_lower": 79295.23,
              "ml_upper": 706409.98,
              "auto_lower": 79295.23,
              "auto_upper": 706409.9800000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 228,
            "refseq_count": 111,
            "final_count": 228,
            "filtered_out_count": 0,
            "pass_count": 213,
            "warn_count": 19,
            "fail_count": 16
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Legionella_fraseri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3300000.0,
              "upper": 3900000.0,
              "final_lower": 3300000.0,
              "final_upper": 3900000.0,
              "warn_lower": 3300000.0,
              "warn_upper": 3800000.0,
              "source": "computed",
              "ml_lower": 3339012.78,
              "ml_upper": 3819940.65,
              "auto_lower": 3339012.78,
              "auto_upper": 3819940.65,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 38.07,
              "upper": 38.29,
              "final_lower": 38.07,
              "final_upper": 38.29,
              "warn_lower": 38.13,
              "warn_upper": 38.26,
              "source": "computed",
              "ml_lower": 38.07,
              "ml_upper": 38.29,
              "auto_lower": 38.074633,
              "auto_upper": 38.285225000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2900.0,
              "upper": 3600.0,
              "final_lower": 2900.0,
              "final_upper": 3600.0,
              "warn_lower": 3000.0,
              "warn_upper": 3500.0,
              "source": "computed",
              "ml_lower": 2981.14,
              "ml_upper": 3500.27,
              "auto_lower": 2981.14,
              "auto_upper": 3500.27,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.99,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.1,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.1,
              "ml_upper": 1.09,
              "auto_lower": 0.1,
              "auto_upper": 1.0927,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 46000.0,
              "upper": null,
              "final_lower": 46000.0,
              "final_upper": null,
              "warn_lower": 76000.0,
              "warn_upper": 504526.49,
              "source": "computed",
              "ml_lower": 46178.31,
              "ml_upper": 504526.49,
              "auto_lower": 46178.31,
              "auto_upper": 504526.49,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 190.0,
              "final_lower": null,
              "final_upper": 190.0,
              "warn_lower": 33.0,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 33.0,
              "ml_upper": 181.35,
              "auto_lower": 33.0,
              "auto_upper": 181.3499999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 144728.0,
              "warn_upper": 1040517.37,
              "source": "computed",
              "ml_lower": 144728.0,
              "ml_upper": 1040517.37,
              "auto_lower": 144728.0,
              "auto_upper": 1040517.3699999994,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 547,
            "refseq_count": 0,
            "final_count": 547,
            "filtered_out_count": 0,
            "pass_count": 506,
            "warn_count": 51,
            "fail_count": 40
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Legionella_longbeachae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3900000.0,
              "upper": 4400000.0,
              "final_lower": 3900000.0,
              "final_upper": 4400000.0,
              "warn_lower": 4000000.0,
              "warn_upper": 4300000.0,
              "source": "computed",
              "ml_lower": 3977100.0,
              "ml_upper": 4349858.0,
              "auto_lower": 3977100.0,
              "auto_upper": 4275913.46,
              "refseq_lower": 4079404.33,
              "refseq_upper": 4346896.7
            },
            {
              "metric": "GC_Content",
              "lower": 37.04,
              "upper": 37.21,
              "final_lower": 37.04,
              "final_upper": 37.21,
              "warn_lower": 37.04,
              "warn_upper": 37.17,
              "source": "computed",
              "ml_lower": 37.0437,
              "ml_upper": 37.202,
              "auto_lower": 37.0437,
              "auto_upper": 37.185339,
              "refseq_lower": 37.064117,
              "refseq_upper": 37.201313
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 3900.0,
              "final_lower": 3400.0,
              "final_upper": 3900.0,
              "warn_lower": 3400.0,
              "warn_upper": 3800.0,
              "source": "computed",
              "ml_lower": 3437.0,
              "ml_upper": 3830.0,
              "auto_lower": 3437.0,
              "auto_upper": 3805.195,
              "refseq_lower": 3578.53,
              "refseq_upper": 3827.39
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.49,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.49,
              "refseq_upper": 98.1987
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.12,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.12,
              "ml_upper": 7.69,
              "auto_lower": 0.12,
              "auto_upper": 1.28,
              "refseq_lower": 1.0006,
              "refseq_upper": 7.6003
            },
            {
              "metric": "N50",
              "lower": 32000.0,
              "upper": null,
              "final_lower": 32000.0,
              "final_upper": null,
              "warn_lower": 39000.0,
              "warn_upper": 263288.4,
              "source": "computed",
              "ml_lower": 32482.01,
              "ml_upper": 263288.4,
              "auto_lower": 32482.01,
              "auto_upper": 263288.40499999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 260.0,
              "final_lower": null,
              "final_upper": 260.0,
              "warn_lower": 46.61,
              "warn_upper": 240.0,
              "source": "computed",
              "ml_lower": 46.61,
              "ml_upper": 252.53,
              "auto_lower": 46.61,
              "auto_upper": 252.5349999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 118555.34,
              "warn_upper": 655737.0,
              "source": "computed",
              "ml_lower": 118555.34,
              "ml_upper": 655737.0,
              "auto_lower": 118555.34,
              "auto_upper": 655737.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 162,
            "refseq_count": 7,
            "final_count": 162,
            "filtered_out_count": 0,
            "pass_count": 151,
            "warn_count": 24,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Legionella_pneumophila": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3200000.0,
              "upper": 3800000.0,
              "final_lower": 3200000.0,
              "final_upper": 3800000.0,
              "warn_lower": 3200000.0,
              "warn_upper": 3800000.0,
              "source": "computed",
              "ml_lower": 3226377.97,
              "ml_upper": 3772720.91,
              "auto_lower": 3226377.97,
              "auto_upper": 3772720.909999999,
              "refseq_lower": 3332986.59,
              "refseq_upper": 3711132.48
            },
            {
              "metric": "GC_Content",
              "lower": 38.11,
              "upper": 38.48,
              "final_lower": 38.11,
              "final_upper": 38.48,
              "warn_lower": 38.15,
              "warn_upper": 38.37,
              "source": "computed",
              "ml_lower": 38.1144,
              "ml_upper": 38.4785,
              "auto_lower": 38.1143725,
              "auto_upper": 38.393459500000006,
              "refseq_lower": 38.152905999999994,
              "refseq_upper": 38.461184
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2800.0,
              "upper": 3500.0,
              "final_lower": 2800.0,
              "final_upper": 3500.0,
              "warn_lower": 2900.0,
              "warn_upper": 3400.0,
              "source": "computed",
              "ml_lower": 2878.0,
              "ml_upper": 3450.0,
              "auto_lower": 2878.0,
              "auto_upper": 3450.0,
              "refseq_lower": 2969.51,
              "refseq_upper": 3356.2799999999997
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.32,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.143,
              "refseq_upper": 99.4
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.04,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 2.38,
              "auto_lower": 0.04,
              "auto_upper": 0.9,
              "refseq_lower": 0.25,
              "refseq_upper": 2.3160999999999996
            },
            {
              "metric": "N50",
              "lower": 50000.0,
              "upper": null,
              "final_lower": 50000.0,
              "final_upper": null,
              "warn_lower": 74000.0,
              "warn_upper": 638015.6,
              "source": "computed",
              "ml_lower": 50832.48,
              "ml_upper": 638015.6,
              "auto_lower": 50832.479999999996,
              "auto_upper": 638015.6,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 20.0,
              "warn_upper": 150.0,
              "source": "computed",
              "ml_lower": 20.0,
              "ml_upper": 203.86,
              "auto_lower": 20.0,
              "auto_upper": 203.86499999999978,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 145586.02,
              "warn_upper": 1132601.0,
              "source": "computed",
              "ml_lower": 145586.02,
              "ml_upper": 1132601.0,
              "auto_lower": 145586.015,
              "auto_upper": 1132601.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 6428,
            "refseq_count": 207,
            "final_count": 6428,
            "filtered_out_count": 0,
            "pass_count": 5988,
            "warn_count": 708,
            "fail_count": 326
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Leptospira_borgpetersenii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3700000.0,
              "upper": 4100000.0,
              "final_lower": 3700000.0,
              "final_upper": 4100000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 4000000.0,
              "source": "computed",
              "ml_lower": 3700183.48,
              "ml_upper": 4063410.0,
              "auto_lower": 3700183.48,
              "auto_upper": 3980659.66,
              "refseq_lower": 3868069.18,
              "refseq_upper": 4063371.65
            },
            {
              "metric": "GC_Content",
              "lower": 40.01,
              "upper": 40.32,
              "final_lower": 40.01,
              "final_upper": 40.32,
              "warn_lower": 40.01,
              "warn_upper": 40.3,
              "source": "computed",
              "ml_lower": 40.0101,
              "ml_upper": 40.3126,
              "auto_lower": 40.010102,
              "auto_upper": 40.31258,
              "refseq_lower": 40.018405,
              "refseq_upper": 40.242063
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3300.0,
              "upper": 3700.0,
              "final_lower": 3300.0,
              "final_upper": 3700.0,
              "warn_lower": 3300.0,
              "warn_upper": 3700.0,
              "source": "computed",
              "ml_lower": 3327.16,
              "ml_upper": 3680.0,
              "auto_lower": 3327.16,
              "auto_upper": 3667.24,
              "refseq_lower": 3417.17,
              "refseq_upper": 3675.06
            },
            {
              "metric": "Completeness_Specific",
              "lower": 69.0,
              "upper": null,
              "final_lower": 69.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 69.64,
              "ml_upper": 100.0,
              "auto_lower": 99.9778,
              "auto_upper": 100.0,
              "refseq_lower": 69.6452,
              "refseq_upper": 73.13
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.06,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 8.7,
              "auto_lower": 0.06,
              "auto_upper": 1.0129999999999992,
              "refseq_lower": 3.5546,
              "refseq_upper": 8.5466
            },
            {
              "metric": "N50",
              "lower": 32000.0,
              "upper": null,
              "final_lower": 32000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 184020.42,
              "source": "computed",
              "ml_lower": 32382.96,
              "ml_upper": 184020.42,
              "auto_lower": 32382.96,
              "auto_upper": 184020.41999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 400.0,
              "final_lower": null,
              "final_upper": 400.0,
              "warn_lower": 98.78,
              "warn_upper": 330.0,
              "source": "computed",
              "ml_lower": 98.78,
              "ml_upper": 393.82,
              "auto_lower": 98.78,
              "auto_upper": 393.8199999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 80220.72,
              "warn_upper": 457932.62,
              "source": "computed",
              "ml_lower": 80220.72,
              "ml_upper": 457932.62,
              "auto_lower": 80220.72,
              "auto_upper": 457932.62,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 157,
            "refseq_count": 27,
            "final_count": 157,
            "filtered_out_count": 0,
            "pass_count": 151,
            "warn_count": 7,
            "fail_count": 17
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Leptospira_interrogans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 5600000.0,
              "final_lower": 4300000.0,
              "final_upper": 5600000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4381724.89,
              "ml_upper": 5521455.0,
              "auto_lower": 4381724.89,
              "auto_upper": 5081758.52,
              "refseq_lower": 4603214.635,
              "refseq_upper": 5496641.42
            },
            {
              "metric": "GC_Content",
              "lower": 34.9,
              "upper": 35.6,
              "final_lower": 34.9,
              "final_upper": 35.6,
              "warn_lower": 34.91,
              "warn_upper": 35.26,
              "source": "computed",
              "ml_lower": 34.908,
              "ml_upper": 35.5967,
              "auto_lower": 34.9080285,
              "auto_upper": 35.348587,
              "refseq_lower": 34.985213,
              "refseq_upper": 35.542471
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3600.0,
              "upper": 4800.0,
              "final_lower": 3600.0,
              "final_upper": 4800.0,
              "warn_lower": 3600.0,
              "warn_upper": 4400.0,
              "source": "computed",
              "ml_lower": 3647.0,
              "ml_upper": 4721.0,
              "auto_lower": 3647.0,
              "auto_upper": 4519.339999999999,
              "refseq_lower": 3772.44,
              "refseq_upper": 4707.275
            },
            {
              "metric": "Completeness_Specific",
              "lower": 73.0,
              "upper": null,
              "final_lower": 73.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 73.36,
              "ml_upper": 100.0,
              "auto_lower": 99.07900000000001,
              "auto_upper": 100.0,
              "refseq_lower": 73.3905,
              "refseq_upper": 75.42035
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 13.0,
              "final_lower": null,
              "final_upper": 13.0,
              "warn_lower": 0.04,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 12.19,
              "auto_lower": 0.04,
              "auto_upper": 1.4929999999999837,
              "refseq_lower": 8.4522,
              "refseq_upper": 11.63795
            },
            {
              "metric": "N50",
              "lower": 11000.0,
              "upper": null,
              "final_lower": 11000.0,
              "final_upper": null,
              "warn_lower": 14000.0,
              "warn_upper": 203924.09,
              "source": "computed",
              "ml_lower": 11135.58,
              "ml_upper": 203924.09,
              "auto_lower": 11135.575,
              "auto_upper": 203924.0949999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 830.0,
              "final_lower": null,
              "final_upper": 830.0,
              "warn_lower": 108.0,
              "warn_upper": 680.0,
              "source": "computed",
              "ml_lower": 108.0,
              "ml_upper": 824.57,
              "auto_lower": 108.0,
              "auto_upper": 824.5749999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 48905.12,
              "warn_upper": 525266.12,
              "source": "computed",
              "ml_lower": 48905.12,
              "ml_upper": 525266.12,
              "auto_lower": 48905.115,
              "auto_upper": 525266.115,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 620,
            "refseq_count": 62,
            "final_count": 620,
            "filtered_out_count": 0,
            "pass_count": 574,
            "warn_count": 53,
            "fail_count": 29
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Ligilactobacillus_salivarius": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2400000.0,
              "final_lower": 1700000.0,
              "final_upper": 2400000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1795641.96,
              "ml_upper": 2320461.0,
              "auto_lower": 1795641.955,
              "auto_upper": 2206261.0300000003,
              "refseq_lower": 1876009.58,
              "refseq_upper": 2320032.935
            },
            {
              "metric": "GC_Content",
              "lower": 32.46,
              "upper": 33.21,
              "final_lower": 32.46,
              "final_upper": 33.21,
              "warn_lower": 32.53,
              "warn_upper": 33.05,
              "source": "computed",
              "ml_lower": 32.4634,
              "ml_upper": 33.2063,
              "auto_lower": 32.4633805,
              "auto_upper": 33.118412,
              "refseq_lower": 32.796721500000004,
              "refseq_upper": 33.201054
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2400.0,
              "final_lower": 1700.0,
              "final_upper": 2400.0,
              "warn_lower": 1700.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1738.34,
              "ml_upper": 2346.0,
              "auto_lower": 1738.335,
              "auto_upper": 2279.9900000000002,
              "refseq_lower": 1809.25,
              "refseq_upper": 2342.64
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 92.47,
              "ml_upper": 99.99,
              "auto_lower": 99.3367,
              "auto_upper": 99.99,
              "refseq_lower": 92.57535,
              "refseq_upper": 98.14485
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.24,
              "auto_lower": 0.0,
              "auto_upper": 0.3466000000000008,
              "refseq_lower": 0.8264499999999999,
              "refseq_upper": 3.24
            },
            {
              "metric": "N50",
              "lower": 16000.0,
              "upper": null,
              "final_lower": 16000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 317736.66,
              "source": "computed",
              "ml_lower": 16784.72,
              "ml_upper": 317736.66,
              "auto_lower": 16784.72,
              "auto_upper": 317736.65500000067,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 260.0,
              "final_lower": null,
              "final_upper": 260.0,
              "warn_lower": 31.67,
              "warn_upper": 210.0,
              "source": "computed",
              "ml_lower": 31.67,
              "ml_upper": 251.65,
              "auto_lower": 31.67,
              "auto_upper": 251.64500000000027,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 69351.68,
              "warn_upper": 756515.6,
              "source": "computed",
              "ml_lower": 69351.68,
              "ml_upper": 756515.6,
              "auto_lower": 69351.68,
              "auto_upper": 756515.6000000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 268,
            "refseq_count": 44,
            "final_count": 268,
            "filtered_out_count": 0,
            "pass_count": 252,
            "warn_count": 19,
            "fail_count": 17
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Limosilactobacillus_fermentum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2400000.0,
              "final_lower": 1800000.0,
              "final_upper": 2400000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1883287.18,
              "ml_upper": 2330492.0,
              "auto_lower": 1883287.175,
              "auto_upper": 2192636.3,
              "refseq_lower": 1906061.45,
              "refseq_upper": 2329205.1
            },
            {
              "metric": "GC_Content",
              "lower": 50.48,
              "upper": 52.35,
              "final_lower": 50.48,
              "final_upper": 52.35,
              "warn_lower": 51.23,
              "warn_upper": 52.27,
              "source": "computed",
              "ml_lower": 50.4877,
              "ml_upper": 52.3426,
              "auto_lower": 51.148312499999996,
              "auto_upper": 52.342575000000004,
              "refseq_lower": 50.538104999999995,
              "refseq_upper": 52.295519999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2500.0,
              "final_lower": 1900.0,
              "final_upper": 2500.0,
              "warn_lower": 1900.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1902.55,
              "ml_upper": 2421.0,
              "auto_lower": 1902.55,
              "auto_upper": 2311.0750000000003,
              "refseq_lower": 1921.975,
              "refseq_upper": 2415.475
            },
            {
              "metric": "Completeness_Specific",
              "lower": 85.0,
              "upper": null,
              "final_lower": 85.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 85.17,
              "ml_upper": 100.0,
              "auto_lower": 99.14275,
              "auto_upper": 100.0,
              "refseq_lower": 85.34,
              "refseq_upper": 97.611
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 11.0,
              "final_lower": null,
              "final_upper": 11.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 10.1,
              "auto_lower": 0.0,
              "auto_upper": 1.2272500000000002,
              "refseq_lower": 0.92,
              "refseq_upper": 9.815250000000002
            },
            {
              "metric": "N50",
              "lower": 27000.0,
              "upper": null,
              "final_lower": 27000.0,
              "final_upper": null,
              "warn_lower": 30000.0,
              "warn_upper": 76056.55,
              "source": "computed",
              "ml_lower": 27099.98,
              "ml_upper": 76056.55,
              "auto_lower": 27099.975,
              "auto_upper": 76056.55,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 113.38,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 113.38,
              "ml_upper": 326.53,
              "auto_lower": 113.375,
              "auto_upper": 326.5250000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 78480.77,
              "warn_upper": 255886.48,
              "source": "computed",
              "ml_lower": 78480.77,
              "ml_upper": 255886.48,
              "auto_lower": 78480.775,
              "auto_upper": 255886.47500000062,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 456,
            "refseq_count": 86,
            "final_count": 456,
            "filtered_out_count": 0,
            "pass_count": 415,
            "warn_count": 39,
            "fail_count": 24
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Limosilactobacillus_mucosae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2500000.0,
              "final_lower": 1800000.0,
              "final_upper": 2500000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1883073.35,
              "ml_upper": 2434610.0,
              "auto_lower": 1883073.35,
              "auto_upper": 2318063.7250000006,
              "refseq_lower": 2007834.79,
              "refseq_upper": 2427075.7399999998
            },
            {
              "metric": "GC_Content",
              "lower": 46.1,
              "upper": 46.92,
              "final_lower": 46.1,
              "final_upper": 46.92,
              "warn_lower": 46.34,
              "warn_upper": 46.87,
              "source": "computed",
              "ml_lower": 46.1033,
              "ml_upper": 46.9137,
              "auto_lower": 46.28271,
              "auto_upper": 46.913665,
              "refseq_lower": 46.120354999999996,
              "refseq_upper": 46.834702
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2400.0,
              "final_lower": 1700.0,
              "final_upper": 2400.0,
              "warn_lower": 1700.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1772.0,
              "ml_upper": 2336.0,
              "auto_lower": 1772.0,
              "auto_upper": 2173.8,
              "refseq_lower": 1947.93,
              "refseq_upper": 2331.95
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.66,
              "ml_upper": 100.0,
              "auto_lower": 99.82,
              "auto_upper": 100.0,
              "refseq_lower": 97.6813,
              "refseq_upper": 99.02
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 0.84,
              "auto_lower": 0.03,
              "auto_upper": 0.7320000000000004,
              "refseq_lower": 0.4616,
              "refseq_upper": 0.8361999999999999
            },
            {
              "metric": "N50",
              "lower": 70000.0,
              "upper": null,
              "final_lower": 70000.0,
              "final_upper": null,
              "warn_lower": 75000.0,
              "warn_upper": 299166.83,
              "source": "computed",
              "ml_lower": 70877.55,
              "ml_upper": 299166.83,
              "auto_lower": 70877.55,
              "auto_upper": 299166.82500000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 32.9,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 32.9,
              "ml_upper": 106.05,
              "auto_lower": 32.9,
              "auto_upper": 106.05000000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 184709.3,
              "warn_upper": 550746.05,
              "source": "computed",
              "ml_lower": 184709.3,
              "ml_upper": 550746.05,
              "auto_lower": 184709.3,
              "auto_upper": 550746.0500000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 96,
            "refseq_count": 7,
            "final_count": 96,
            "filtered_out_count": 0,
            "pass_count": 89,
            "warn_count": 10,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Limosilactobacillus_reuteri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2700000.0,
              "final_lower": 1800000.0,
              "final_upper": 2700000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1816608.88,
              "ml_upper": 2695904.0,
              "auto_lower": 1816608.88,
              "auto_upper": 2342170.44,
              "refseq_lower": 1945111.465,
              "refseq_upper": 2644981.0249999994
            },
            {
              "metric": "GC_Content",
              "lower": 38.28,
              "upper": 39.44,
              "final_lower": 38.28,
              "final_upper": 39.44,
              "warn_lower": 38.35,
              "warn_upper": 38.86,
              "source": "computed",
              "ml_lower": 38.2827,
              "ml_upper": 39.4323,
              "auto_lower": 38.282704,
              "auto_upper": 38.909902,
              "refseq_lower": 38.337644000000004,
              "refseq_upper": 39.3403195
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2800.0,
              "final_lower": 1700.0,
              "final_upper": 2800.0,
              "warn_lower": 1800.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 1792.86,
              "ml_upper": 2744.0,
              "auto_lower": 1792.86,
              "auto_upper": 2440.5599999999995,
              "refseq_lower": 1939.71,
              "refseq_upper": 2674.774999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.18,
              "ml_upper": 100.0,
              "auto_lower": 99.8636,
              "auto_upper": 100.0,
              "refseq_lower": 93.5279,
              "refseq_upper": 99.35
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.03,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 1.49,
              "auto_lower": 0.03,
              "auto_upper": 1.2019999999999993,
              "refseq_lower": 0.242,
              "refseq_upper": 1.4579999999999995
            },
            {
              "metric": "N50",
              "lower": 15000.0,
              "upper": null,
              "final_lower": 15000.0,
              "final_upper": null,
              "warn_lower": 17000.0,
              "warn_upper": 120037.32,
              "source": "computed",
              "ml_lower": 15954.0,
              "ml_upper": 120037.32,
              "auto_lower": 15954.0,
              "auto_upper": 120037.31999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 380.0,
              "final_lower": null,
              "final_upper": 380.0,
              "warn_lower": 57.18,
              "warn_upper": 350.0,
              "source": "computed",
              "ml_lower": 57.18,
              "ml_upper": 373.64,
              "auto_lower": 57.18,
              "auto_upper": 373.64,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 54088.98,
              "warn_upper": 407339.88,
              "source": "computed",
              "ml_lower": 54088.98,
              "ml_upper": 407339.88,
              "auto_lower": 54088.98,
              "auto_upper": 407339.87999999983,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 237,
            "refseq_count": 72,
            "final_count": 237,
            "filtered_out_count": 0,
            "pass_count": 231,
            "warn_count": 28,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Listeria_grayi": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2500000.0,
              "upper": 2900000.0,
              "final_lower": 2500000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2600000.0,
              "warn_upper": 2900000.0,
              "source": "computed",
              "ml_lower": 2577124.28,
              "ml_upper": 2860271.13,
              "auto_lower": 2577124.28,
              "auto_upper": 2860271.13,
              "refseq_lower": 2751104.0,
              "refseq_upper": 2751104.0
            },
            {
              "metric": "GC_Content",
              "lower": 41.22,
              "upper": 41.69,
              "final_lower": 41.22,
              "final_upper": 41.69,
              "warn_lower": 41.31,
              "warn_upper": 41.66,
              "source": "computed",
              "ml_lower": 41.2208,
              "ml_upper": 41.6832,
              "auto_lower": 41.220779,
              "auto_upper": 41.683157,
              "refseq_lower": 41.574,
              "refseq_upper": 41.574
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2500.0,
              "upper": 2900.0,
              "final_lower": 2500.0,
              "final_upper": 2900.0,
              "warn_lower": 2500.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2576.65,
              "ml_upper": 2874.88,
              "auto_lower": 2576.65,
              "auto_upper": 2874.88,
              "refseq_lower": 2747.0,
              "refseq_upper": 2747.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 83.0,
              "upper": null,
              "final_lower": 83.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 83.76,
              "ml_upper": 99.99,
              "auto_lower": 99.9353,
              "auto_upper": 99.99,
              "refseq_lower": 83.76,
              "refseq_upper": 83.76
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.25,
              "auto_lower": 0.0,
              "auto_upper": 0.18639999999999987,
              "refseq_lower": 6.25,
              "refseq_upper": 6.25
            },
            {
              "metric": "N50",
              "lower": 144000.0,
              "upper": null,
              "final_lower": 144000.0,
              "final_upper": null,
              "warn_lower": 163000.0,
              "warn_upper": 683667.27,
              "source": "computed",
              "ml_lower": 144956.0,
              "ml_upper": 683667.27,
              "auto_lower": 144956.0,
              "auto_upper": 683667.27,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 22.0,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 22.0,
              "ml_upper": 88.88,
              "auto_lower": 22.0,
              "auto_upper": 88.88,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 262261.0,
              "warn_upper": 1124323.3,
              "source": "computed",
              "ml_lower": 262261.0,
              "ml_upper": 1124323.3,
              "auto_lower": 262261.0,
              "auto_upper": 1124323.3,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 107,
            "refseq_count": 1,
            "final_count": 107,
            "filtered_out_count": 0,
            "pass_count": 99,
            "warn_count": 12,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Listeria_innocua": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2700000.0,
              "upper": 3100000.0,
              "final_lower": 2700000.0,
              "final_upper": 3100000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3100000.0,
              "source": "computed",
              "ml_lower": 2764925.92,
              "ml_upper": 3093113.0,
              "auto_lower": 2764925.92,
              "auto_upper": 3054957.97,
              "refseq_lower": 2796963.9,
              "refseq_upper": 3091158.5
            },
            {
              "metric": "GC_Content",
              "lower": 37.19,
              "upper": 37.57,
              "final_lower": 37.19,
              "final_upper": 37.57,
              "warn_lower": 37.22,
              "warn_upper": 37.48,
              "source": "computed",
              "ml_lower": 37.198,
              "ml_upper": 37.5607,
              "auto_lower": 37.198001999999995,
              "auto_upper": 37.497237,
              "refseq_lower": 37.28253,
              "refseq_upper": 37.55836
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2700.0,
              "upper": 3300.0,
              "final_lower": 2700.0,
              "final_upper": 3300.0,
              "warn_lower": 2700.0,
              "warn_upper": 3100.0,
              "source": "computed",
              "ml_lower": 2723.0,
              "ml_upper": 3219.0,
              "auto_lower": 2723.0,
              "auto_upper": 3102.0,
              "refseq_lower": 2811.4,
              "refseq_upper": 3211.6
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.16,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.432,
              "refseq_upper": 99.4
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.07,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 1.09,
              "auto_lower": 0.2777,
              "auto_upper": 1.091500000000001,
              "refseq_lower": 0.07,
              "refseq_upper": 0.6649999999999998
            },
            {
              "metric": "N50",
              "lower": 48000.0,
              "upper": null,
              "final_lower": 48000.0,
              "final_upper": null,
              "warn_lower": 70000.0,
              "warn_upper": 1502609.8,
              "source": "computed",
              "ml_lower": 48951.61,
              "ml_upper": 1502609.8,
              "auto_lower": 48951.61,
              "auto_upper": 1502609.8,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 12.0,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 12.0,
              "ml_upper": 173.92,
              "auto_lower": 12.0,
              "auto_upper": 173.92000000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 143726.21,
              "warn_upper": 1502609.8,
              "source": "computed",
              "ml_lower": 143726.21,
              "ml_upper": 1502609.8,
              "auto_lower": 143726.21,
              "auto_upper": 1502609.8,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1555,
            "refseq_count": 21,
            "final_count": 1555,
            "filtered_out_count": 0,
            "pass_count": 1467,
            "warn_count": 186,
            "fail_count": 116
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Listeria_monocytogenes": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2800000.0,
              "upper": 3300000.0,
              "final_lower": 2800000.0,
              "final_upper": 3300000.0,
              "warn_lower": 2800000.0,
              "warn_upper": 3200000.0,
              "source": "computed",
              "ml_lower": 2815543.0,
              "ml_upper": 3243301.0,
              "auto_lower": 2841344.605,
              "auto_upper": 3158136.185,
              "refseq_lower": 2839999.15,
              "refseq_upper": 3187386.09
            },
            {
              "metric": "GC_Content",
              "lower": 37.71,
              "upper": 38.3,
              "final_lower": 37.71,
              "final_upper": 38.3,
              "warn_lower": 37.75,
              "warn_upper": 37.97,
              "source": "computed",
              "ml_lower": 37.7151,
              "ml_upper": 38.2939,
              "auto_lower": 37.7151,
              "auto_upper": 38.078637,
              "refseq_lower": 37.790907,
              "refseq_upper": 38.261972
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2700.0,
              "upper": 3400.0,
              "final_lower": 2700.0,
              "final_upper": 3400.0,
              "warn_lower": 2700.0,
              "warn_upper": 3200.0,
              "source": "computed",
              "ml_lower": 2773.0,
              "ml_upper": 3322.0,
              "auto_lower": 2773.0,
              "auto_upper": 3189.0,
              "refseq_lower": 2816.0,
              "refseq_upper": 3290.290000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.29,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 97.174,
              "refseq_upper": 99.27
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.17,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.17,
              "ml_upper": 4.14,
              "auto_lower": 0.49,
              "auto_upper": 1.13,
              "refseq_lower": 0.3082,
              "refseq_upper": 1.0149000000000035
            },
            {
              "metric": "N50",
              "lower": 66000.0,
              "upper": null,
              "final_lower": 66000.0,
              "final_upper": null,
              "warn_lower": 101000.0,
              "warn_upper": 1501621.59,
              "source": "computed",
              "ml_lower": 66076.23,
              "ml_upper": 1501621.59,
              "auto_lower": 66076.225,
              "auto_upper": 1501621.5899999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 14.0,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 14.0,
              "ml_upper": 110.18,
              "auto_lower": 14.0,
              "auto_upper": 110.18499999999767,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 193149.72,
              "warn_upper": 1503531.2,
              "source": "computed",
              "ml_lower": 193149.72,
              "ml_upper": 1503531.2,
              "auto_lower": 193149.72,
              "auto_upper": 1503531.2049999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 59564,
            "refseq_count": 683,
            "final_count": 59564,
            "filtered_out_count": 0,
            "pass_count": 57757,
            "warn_count": 5882,
            "fail_count": 3048
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Listeria_seeligeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2700000.0,
              "upper": 3100000.0,
              "final_lower": 2700000.0,
              "final_upper": 3100000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3000000.0,
              "source": "computed",
              "ml_lower": 2766247.36,
              "ml_upper": 3030698.69,
              "auto_lower": 2766247.355,
              "auto_upper": 3030698.69,
              "refseq_lower": 2798985.36,
              "refseq_upper": 2926986.98
            },
            {
              "metric": "GC_Content",
              "lower": 37.11,
              "upper": 37.47,
              "final_lower": 37.11,
              "final_upper": 37.47,
              "warn_lower": 37.15,
              "warn_upper": 37.35,
              "source": "computed",
              "ml_lower": 37.1199,
              "ml_upper": 37.4641,
              "auto_lower": 37.119915500000005,
              "auto_upper": 37.362389,
              "refseq_lower": 37.287077999999994,
              "refseq_upper": 37.46247
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 3100.0,
              "final_lower": 2600.0,
              "final_upper": 3100.0,
              "warn_lower": 2700.0,
              "warn_upper": 3000.0,
              "source": "computed",
              "ml_lower": 2675.45,
              "ml_upper": 3012.36,
              "auto_lower": 2675.45,
              "auto_upper": 3012.355,
              "refseq_lower": 2791.18,
              "refseq_upper": 2929.96
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.86,
              "ml_upper": 100.0,
              "auto_lower": 99.96,
              "auto_upper": 100.0,
              "refseq_lower": 98.8648,
              "refseq_upper": 99.67720000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.08,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.08,
              "ml_upper": 0.95,
              "auto_lower": 0.51,
              "auto_upper": 0.94785,
              "refseq_lower": 0.08285000000000001,
              "refseq_upper": 0.59595
            },
            {
              "metric": "N50",
              "lower": 109000.0,
              "upper": null,
              "final_lower": 109000.0,
              "final_upper": null,
              "warn_lower": 139000.0,
              "warn_upper": 567488.98,
              "source": "computed",
              "ml_lower": 109096.85,
              "ml_upper": 567488.98,
              "auto_lower": 109096.85,
              "auto_upper": 567488.985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 20.22,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 20.22,
              "ml_upper": 84.35,
              "auto_lower": 20.215,
              "auto_upper": 84.35499999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 272690.09,
              "warn_upper": 1046021.22,
              "source": "computed",
              "ml_lower": 272690.09,
              "ml_upper": 1046021.22,
              "auto_lower": 272690.095,
              "auto_upper": 1046021.225,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 244,
            "refseq_count": 5,
            "final_count": 244,
            "filtered_out_count": 0,
            "pass_count": 230,
            "warn_count": 33,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Listeria_welshimeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2700000.0,
              "upper": 3000000.0,
              "final_lower": 2700000.0,
              "final_upper": 3000000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3000000.0,
              "source": "computed",
              "ml_lower": 2706534.72,
              "ml_upper": 2953457.6,
              "auto_lower": 2706534.72,
              "auto_upper": 2953457.6,
              "refseq_lower": 2813703.495,
              "refseq_upper": 2814137.0
            },
            {
              "metric": "GC_Content",
              "lower": 36.07,
              "upper": 36.39,
              "final_lower": 36.07,
              "final_upper": 36.39,
              "warn_lower": 36.1,
              "warn_upper": 36.34,
              "source": "computed",
              "ml_lower": 36.0741,
              "ml_upper": 36.3846,
              "auto_lower": 36.074135999999996,
              "auto_upper": 36.377548,
              "refseq_lower": 36.352,
              "refseq_upper": 36.384111
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 3100.0,
              "final_lower": 2600.0,
              "final_upper": 3100.0,
              "warn_lower": 2600.0,
              "warn_upper": 3000.0,
              "source": "computed",
              "ml_lower": 2667.44,
              "ml_upper": 3008.96,
              "auto_lower": 2667.44,
              "auto_upper": 3008.9599999999996,
              "refseq_lower": 2849.015,
              "refseq_upper": 2859.88
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.67,
              "ml_upper": 100.0,
              "auto_lower": 99.95,
              "auto_upper": 100.0,
              "refseq_lower": 99.6709,
              "refseq_upper": 99.73
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.28,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.28,
              "ml_upper": 2.15,
              "auto_lower": 0.71,
              "auto_upper": 2.145999999999999,
              "refseq_lower": 0.28,
              "refseq_upper": 0.28
            },
            {
              "metric": "N50",
              "lower": 79000.0,
              "upper": null,
              "final_lower": 79000.0,
              "final_upper": null,
              "warn_lower": 97000.0,
              "warn_upper": 1520615.0,
              "source": "computed",
              "ml_lower": 79017.6,
              "ml_upper": 1520615.0,
              "auto_lower": 79017.6,
              "auto_upper": 1520615.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 16.0,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 16.0,
              "ml_upper": 108.0,
              "auto_lower": 16.0,
              "auto_upper": 108.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 169564.4,
              "warn_upper": 1520615.0,
              "source": "computed",
              "ml_lower": 169564.4,
              "ml_upper": 1520615.0,
              "auto_lower": 169564.4,
              "auto_upper": 1520615.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 297,
            "refseq_count": 4,
            "final_count": 297,
            "filtered_out_count": 0,
            "pass_count": 296,
            "warn_count": 56,
            "fail_count": 27
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mammaliicoccus_sciuri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2500000.0,
              "upper": 3200000.0,
              "final_lower": 2500000.0,
              "final_upper": 3200000.0,
              "warn_lower": 2500000.0,
              "warn_upper": 3100000.0,
              "source": "computed",
              "ml_lower": 2571610.92,
              "ml_upper": 3178285.0,
              "auto_lower": 2571610.92,
              "auto_upper": 3038084.605,
              "refseq_lower": 2731829.72,
              "refseq_upper": 3156057.48
            },
            {
              "metric": "GC_Content",
              "lower": 32.27,
              "upper": 32.83,
              "final_lower": 32.27,
              "final_upper": 32.83,
              "warn_lower": 32.31,
              "warn_upper": 32.64,
              "source": "computed",
              "ml_lower": 32.2787,
              "ml_upper": 32.8224,
              "auto_lower": 32.2786735,
              "auto_upper": 32.6647485,
              "refseq_lower": 32.423719999999996,
              "refseq_upper": 32.821824
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2600.0,
              "upper": 3300.0,
              "final_lower": 2600.0,
              "final_upper": 3300.0,
              "warn_lower": 2600.0,
              "warn_upper": 3100.0,
              "source": "computed",
              "ml_lower": 2615.1,
              "ml_upper": 3270.0,
              "auto_lower": 2615.105,
              "auto_upper": 3104.5099999999998,
              "refseq_lower": 2754.8,
              "refseq_upper": 3239.6
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 98.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 95.99,
              "ml_upper": 99.99,
              "auto_lower": 98.2342,
              "auto_upper": 99.99,
              "refseq_lower": 96.2012,
              "refseq_upper": 98.9
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 4.37,
              "auto_lower": 0.01,
              "auto_upper": 1.15,
              "refseq_lower": 2.27,
              "refseq_upper": 4.37
            },
            {
              "metric": "N50",
              "lower": 52000.0,
              "upper": null,
              "final_lower": 52000.0,
              "final_upper": null,
              "warn_lower": 62000.0,
              "warn_upper": 677254.78,
              "source": "computed",
              "ml_lower": 52703.02,
              "ml_upper": 677254.78,
              "auto_lower": 52703.015,
              "auto_upper": 677254.7849999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 190.0,
              "final_lower": null,
              "final_upper": 190.0,
              "warn_lower": 21.04,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 21.04,
              "ml_upper": 187.75,
              "auto_lower": 21.035,
              "auto_upper": 187.75499999999982,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 140991.86,
              "warn_upper": 1397866.34,
              "source": "computed",
              "ml_lower": 140991.86,
              "ml_upper": 1397866.34,
              "auto_lower": 140991.855,
              "auto_upper": 1397866.3449999995,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 408,
            "refseq_count": 65,
            "final_count": 408,
            "filtered_out_count": 0,
            "pass_count": 377,
            "warn_count": 47,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mannheimia_haemolytica": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2300000.0,
              "upper": 2900000.0,
              "final_lower": 2300000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2800000.0,
              "source": "computed",
              "ml_lower": 2335738.0,
              "ml_upper": 2829372.0,
              "auto_lower": 2448837.105,
              "auto_upper": 2706665.1350000002,
              "refseq_lower": 2467424.98,
              "refseq_upper": 2828787.675
            },
            {
              "metric": "GC_Content",
              "lower": 40.91,
              "upper": 41.34,
              "final_lower": 40.91,
              "final_upper": 41.34,
              "warn_lower": 40.92,
              "warn_upper": 41.14,
              "source": "computed",
              "ml_lower": 40.9101,
              "ml_upper": 41.34,
              "auto_lower": 40.9100885,
              "auto_upper": 41.172600499999994,
              "refseq_lower": 40.958338499999996,
              "refseq_upper": 41.2982625
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2200.0,
              "upper": 3000.0,
              "final_lower": 2200.0,
              "final_upper": 3000.0,
              "warn_lower": 2400.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2252.0,
              "ml_upper": 2967.0,
              "auto_lower": 2423.0,
              "auto_upper": 2858.445,
              "refseq_lower": 2419.745,
              "refseq_upper": 2962.23
            },
            {
              "metric": "Completeness_Specific",
              "lower": 87.0,
              "upper": null,
              "final_lower": 87.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 87.44,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 88.7915,
              "refseq_upper": 98.37025
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.13,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 7.3,
              "auto_lower": 0.13,
              "auto_upper": 0.4444500000000016,
              "refseq_lower": 0.8436,
              "refseq_upper": 6.695800000000009
            },
            {
              "metric": "N50",
              "lower": 26000.0,
              "upper": null,
              "final_lower": 26000.0,
              "final_upper": null,
              "warn_lower": 33000.0,
              "warn_upper": 135609.01,
              "source": "computed",
              "ml_lower": 26124.85,
              "ml_upper": 135609.01,
              "auto_lower": 26124.85,
              "auto_upper": 135609.00500000047,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 220.0,
              "final_lower": null,
              "final_upper": 220.0,
              "warn_lower": 81.0,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 81.0,
              "ml_upper": 216.0,
              "auto_lower": 81.0,
              "auto_upper": 216.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 87360.95,
              "warn_upper": 341158.89,
              "source": "computed",
              "ml_lower": 87360.95,
              "ml_upper": 341158.89,
              "auto_lower": 87360.95,
              "auto_upper": 341158.89,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2512,
            "refseq_count": 160,
            "final_count": 2512,
            "filtered_out_count": 0,
            "pass_count": 2373,
            "warn_count": 172,
            "fail_count": 191
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Mesomycoplasma_hyopneumoniae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 800000.0,
              "upper": 1000000.0,
              "final_lower": 800000.0,
              "final_upper": 1000000.0,
              "warn_lower": 800000.0,
              "warn_upper": 1000000.0,
              "source": "computed",
              "ml_lower": 869830.11,
              "ml_upper": 960532.0,
              "auto_lower": 869830.11,
              "auto_upper": 940965.265,
              "refseq_lower": 887367.015,
              "refseq_upper": 960069.93
            },
            {
              "metric": "GC_Content",
              "lower": 28.35,
              "upper": 28.69,
              "final_lower": 28.35,
              "final_upper": 28.69,
              "warn_lower": 28.44,
              "warn_upper": 28.66,
              "source": "computed",
              "ml_lower": 28.3556,
              "ml_upper": 28.6802,
              "auto_lower": 28.3990855,
              "auto_upper": 28.680208999999998,
              "refseq_lower": 28.365754499999998,
              "refseq_upper": 28.616324
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 600.0,
              "upper": 800.0,
              "final_lower": 600.0,
              "final_upper": 800.0,
              "warn_lower": 600.0,
              "warn_upper": 800.0,
              "source": "computed",
              "ml_lower": 678.44,
              "ml_upper": 789.0,
              "auto_lower": 678.44,
              "auto_upper": 777.7849999999999,
              "refseq_lower": 696.92,
              "refseq_upper": 787.62
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 98.0,
              "warn_upper": 99.84,
              "source": "computed",
              "ml_lower": 94.43,
              "ml_upper": 99.84,
              "auto_lower": 98.4388,
              "auto_upper": 99.84445,
              "refseq_lower": 94.4415,
              "refseq_upper": 99.11
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.22,
              "auto_lower": 0.03,
              "auto_upper": 0.13444999999999993,
              "refseq_lower": 0.07,
              "refseq_upper": 2.1729999999999996
            },
            {
              "metric": "N50",
              "lower": 40000.0,
              "upper": null,
              "final_lower": 40000.0,
              "final_upper": null,
              "warn_lower": 41000.0,
              "warn_upper": 235592.95,
              "source": "computed",
              "ml_lower": 40425.57,
              "ml_upper": 235592.95,
              "auto_lower": 40425.57,
              "auto_upper": 235592.95499999973,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 18.66,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 18.66,
              "ml_upper": 90.78,
              "auto_lower": 18.665,
              "auto_upper": 90.77999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 78079.06,
              "warn_upper": 365746.78,
              "source": "computed",
              "ml_lower": 78079.06,
              "ml_upper": 365746.78,
              "auto_lower": 78079.06,
              "auto_upper": 365746.78,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 112,
            "refseq_count": 24,
            "final_count": 112,
            "filtered_out_count": 0,
            "pass_count": 105,
            "warn_count": 7,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Micrococcus_luteus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2300000.0,
              "upper": 2800000.0,
              "final_lower": 2300000.0,
              "final_upper": 2800000.0,
              "warn_lower": 2300000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2382742.11,
              "ml_upper": 2750189.38,
              "auto_lower": 2382742.11,
              "auto_upper": 2750189.3850000002,
              "refseq_lower": 2418074.52,
              "refseq_upper": 2681599.72
            },
            {
              "metric": "GC_Content",
              "lower": 72.5,
              "upper": 73.32,
              "final_lower": 72.5,
              "final_upper": 73.32,
              "warn_lower": 72.63,
              "warn_upper": 73.28,
              "source": "computed",
              "ml_lower": 72.5082,
              "ml_upper": 73.3181,
              "auto_lower": 72.5082395,
              "auto_upper": 73.3181285,
              "refseq_lower": 72.7119,
              "refseq_upper": 73.1427
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 2900.0,
              "final_lower": 2100.0,
              "final_upper": 2900.0,
              "warn_lower": 2100.0,
              "warn_upper": 2600.0,
              "source": "computed",
              "ml_lower": 2176.4,
              "ml_upper": 2869.24,
              "auto_lower": 2176.395,
              "auto_upper": 2869.235,
              "refseq_lower": 2252.6,
              "refseq_upper": 2545.76
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.37,
              "ml_upper": 100.0,
              "auto_lower": 98.19835,
              "auto_upper": 100.0,
              "refseq_lower": 92.4116,
              "refseq_upper": 98.89320000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.3,
              "auto_lower": 0.0,
              "auto_upper": 1.8815000000000055,
              "refseq_lower": 0.23,
              "refseq_upper": 2.1159999999999997
            },
            {
              "metric": "N50",
              "lower": 9000.0,
              "upper": null,
              "final_lower": 9000.0,
              "final_upper": null,
              "warn_lower": 16000.0,
              "warn_upper": 250341.9,
              "source": "computed",
              "ml_lower": 9357.0,
              "ml_upper": 250341.9,
              "auto_lower": 9356.995,
              "auto_upper": 250341.9,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 530.0,
              "final_lower": null,
              "final_upper": 530.0,
              "warn_lower": 49.4,
              "warn_upper": 350.0,
              "source": "computed",
              "ml_lower": 49.4,
              "ml_upper": 520.81,
              "auto_lower": 49.395,
              "auto_upper": 520.8100000000022,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 38464.07,
              "warn_upper": 452472.47,
              "source": "computed",
              "ml_lower": 38464.07,
              "ml_upper": 452472.47,
              "auto_lower": 38464.075,
              "auto_upper": 452472.4650000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 280,
            "refseq_count": 33,
            "final_count": 280,
            "filtered_out_count": 0,
            "pass_count": 261,
            "warn_count": 17,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Moraxella_bovoculi": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2500000.0,
              "final_lower": 1900000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1998065.11,
              "ml_upper": 2400952.0,
              "auto_lower": 1998065.11,
              "auto_upper": 2202979.84,
              "refseq_lower": 2086719.12,
              "refseq_upper": 2399440.76
            },
            {
              "metric": "GC_Content",
              "lower": 45.11,
              "upper": 45.73,
              "final_lower": 45.11,
              "final_upper": 45.73,
              "warn_lower": 45.17,
              "warn_upper": 45.72,
              "source": "computed",
              "ml_lower": 45.1132,
              "ml_upper": 45.7277,
              "auto_lower": 45.113158999999996,
              "auto_upper": 45.727692000000005,
              "refseq_lower": 45.248152,
              "refseq_upper": 45.684476000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2500.0,
              "final_lower": 1800.0,
              "final_upper": 2500.0,
              "warn_lower": 1900.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1894.21,
              "ml_upper": 2433.0,
              "auto_lower": 1894.21,
              "auto_upper": 2126.46,
              "refseq_lower": 2028.84,
              "refseq_upper": 2431.72
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.49,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.5052,
              "refseq_upper": 97.8184
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.8,
              "auto_lower": 0.0,
              "auto_upper": 1.1079,
              "refseq_lower": 0.7952,
              "refseq_upper": 1.8
            },
            {
              "metric": "N50",
              "lower": 65000.0,
              "upper": null,
              "final_lower": 65000.0,
              "final_upper": null,
              "warn_lower": 88000.0,
              "warn_upper": 535696.06,
              "source": "computed",
              "ml_lower": 65682.71,
              "ml_upper": 535696.06,
              "auto_lower": 65682.71,
              "auto_upper": 535696.0599999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 80.0,
              "final_lower": null,
              "final_upper": 80.0,
              "warn_lower": 13.03,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 13.03,
              "ml_upper": 75.76,
              "auto_lower": 13.03,
              "auto_upper": 75.75999999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 199228.28,
              "warn_upper": 918528.11,
              "source": "computed",
              "ml_lower": 199228.28,
              "ml_upper": 918528.11,
              "auto_lower": 199228.28,
              "auto_upper": 918528.11,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 207,
            "refseq_count": 9,
            "final_count": 207,
            "filtered_out_count": 0,
            "pass_count": 180,
            "warn_count": 31,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Moraxella_catarrhalis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2100000.0,
              "final_lower": 1800000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2100000.0,
              "source": "computed",
              "ml_lower": 1821553.09,
              "ml_upper": 2054814.14,
              "auto_lower": 1821553.09,
              "auto_upper": 2054814.1400000001,
              "refseq_lower": 1832145.5,
              "refseq_upper": 2042267.72
            },
            {
              "metric": "GC_Content",
              "lower": 41.22,
              "upper": 41.76,
              "final_lower": 41.22,
              "final_upper": 41.76,
              "warn_lower": 41.31,
              "warn_upper": 41.7,
              "source": "computed",
              "ml_lower": 41.2273,
              "ml_upper": 41.7535,
              "auto_lower": 41.2273435,
              "auto_upper": 41.733169499999995,
              "refseq_lower": 41.486078,
              "refseq_upper": 41.753482000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2000.0,
              "final_lower": 1600.0,
              "final_upper": 2000.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1643.0,
              "ml_upper": 1949.56,
              "auto_lower": 1643.0,
              "auto_upper": 1949.565,
              "refseq_lower": 1691.06,
              "refseq_upper": 1946.48
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.18,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.183,
              "refseq_upper": 99.0394
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.44,
              "auto_lower": 0.0,
              "auto_upper": 0.20565000000000055,
              "refseq_lower": 0.21,
              "refseq_upper": 0.4352
            },
            {
              "metric": "N50",
              "lower": 134000.0,
              "upper": null,
              "final_lower": 134000.0,
              "final_upper": null,
              "warn_lower": 170000.0,
              "warn_upper": 478760.91,
              "source": "computed",
              "ml_lower": 134696.9,
              "ml_upper": 478760.91,
              "auto_lower": 134696.9,
              "auto_upper": 478760.91,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 70.0,
              "final_lower": null,
              "final_upper": 70.0,
              "warn_lower": 8.0,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 8.0,
              "ml_upper": 64.57,
              "auto_lower": 8.0,
              "auto_upper": 64.56500000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 288673.41,
              "warn_upper": 829454.41,
              "source": "computed",
              "ml_lower": 288673.41,
              "ml_upper": 829454.41,
              "auto_lower": 288673.405,
              "auto_upper": 829454.4100000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2288,
            "refseq_count": 13,
            "final_count": 2288,
            "filtered_out_count": 0,
            "pass_count": 2183,
            "warn_count": 199,
            "fail_count": 97
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Morganella_morganii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4500000.0,
              "final_lower": 3600000.0,
              "final_upper": 4500000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 4400000.0,
              "source": "computed",
              "ml_lower": 3687100.84,
              "ml_upper": 4451109.35,
              "auto_lower": 3687100.835,
              "auto_upper": 4451109.35,
              "refseq_lower": 3763910.46,
              "refseq_upper": 4398592.835
            },
            {
              "metric": "GC_Content",
              "lower": 50.1,
              "upper": 51.38,
              "final_lower": 50.1,
              "final_upper": 51.38,
              "warn_lower": 50.3,
              "warn_upper": 51.26,
              "source": "computed",
              "ml_lower": 50.1004,
              "ml_upper": 51.3706,
              "auto_lower": 50.100411,
              "auto_upper": 51.310348,
              "refseq_lower": 50.1648415,
              "refseq_upper": 51.3542785
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4400.0,
              "final_lower": 3400.0,
              "final_upper": 4400.0,
              "warn_lower": 3400.0,
              "warn_upper": 4300.0,
              "source": "computed",
              "ml_lower": 3402.63,
              "ml_upper": 4315.0,
              "auto_lower": 3402.63,
              "auto_upper": 4308.69,
              "refseq_lower": 3570.77,
              "refseq_upper": 4305.28
            },
            {
              "metric": "Completeness_Specific",
              "lower": 84.0,
              "upper": null,
              "final_lower": 84.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 84.69,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 85.17195,
              "refseq_upper": 98.12785
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 21.0,
              "final_lower": null,
              "final_upper": 21.0,
              "warn_lower": 0.13,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 20.99,
              "auto_lower": 0.13,
              "auto_upper": 0.8852999999999974,
              "refseq_lower": 2.261,
              "refseq_upper": 20.459449999999997
            },
            {
              "metric": "N50",
              "lower": 44000.0,
              "upper": null,
              "final_lower": 44000.0,
              "final_upper": null,
              "warn_lower": 58000.0,
              "warn_upper": 1167315.23,
              "source": "computed",
              "ml_lower": 44370.47,
              "ml_upper": 1167315.23,
              "auto_lower": 44370.47,
              "auto_upper": 1167315.2349999992,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 240.0,
              "final_lower": null,
              "final_upper": 240.0,
              "warn_lower": 25.21,
              "warn_upper": 190.0,
              "source": "computed",
              "ml_lower": 25.21,
              "ml_upper": 238.0,
              "auto_lower": 25.21,
              "auto_upper": 238.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 150903.0,
              "warn_upper": 1836626.83,
              "source": "computed",
              "ml_lower": 150903.0,
              "ml_upper": 1836626.83,
              "auto_lower": 150903.0,
              "auto_upper": 1836626.8299999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 422,
            "refseq_count": 82,
            "final_count": 422,
            "filtered_out_count": 0,
            "pass_count": 394,
            "warn_count": 41,
            "fail_count": 25
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Mycobacterium_abscessus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5600000.0,
              "final_lower": 4600000.0,
              "final_upper": 5600000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4687873.0,
              "ml_upper": 5588117.6,
              "auto_lower": 4758499.0,
              "auto_upper": 5588117.599999991,
              "refseq_lower": 4735136.455,
              "refseq_upper": 5467031.58
            },
            {
              "metric": "GC_Content",
              "lower": 63.91,
              "upper": 64.33,
              "final_lower": 63.91,
              "final_upper": 64.33,
              "warn_lower": 63.98,
              "warn_upper": 64.29,
              "source": "computed",
              "ml_lower": 63.9128,
              "ml_upper": 64.3238,
              "auto_lower": 63.91284,
              "auto_upper": 64.30446500000001,
              "refseq_lower": 63.9403845,
              "refseq_upper": 64.2994085
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4600.0,
              "upper": 5800.0,
              "final_lower": 4600.0,
              "final_upper": 5800.0,
              "warn_lower": 4600.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 4635.0,
              "ml_upper": 5715.65,
              "auto_lower": 4644.35,
              "auto_upper": 5715.65,
              "refseq_lower": 4664.795,
              "refseq_upper": 5509.375
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.05,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 96.20655,
              "refseq_upper": 99.2397
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.07,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 2.47,
              "auto_lower": 0.07,
              "auto_upper": 0.8929999999999927,
              "refseq_lower": 0.63,
              "refseq_upper": 2.47
            },
            {
              "metric": "N50",
              "lower": 74000.0,
              "upper": null,
              "final_lower": 74000.0,
              "final_upper": null,
              "warn_lower": 109000.0,
              "warn_upper": 1904740.0,
              "source": "computed",
              "ml_lower": 74696.3,
              "ml_upper": 1904740.0,
              "auto_lower": 74696.3,
              "auto_upper": 1904740.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 8.0,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 8.0,
              "ml_upper": 173.65,
              "auto_lower": 8.0,
              "auto_upper": 173.64999999999964,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 216795.3,
              "warn_upper": 2467768.95,
              "source": "computed",
              "ml_lower": 216795.3,
              "ml_upper": 2467768.95,
              "auto_lower": 216795.3,
              "auto_upper": 2467768.9499999997,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 5471,
            "refseq_count": 102,
            "final_count": 5471,
            "filtered_out_count": 0,
            "pass_count": 5216,
            "warn_count": 399,
            "fail_count": 266
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_avium": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 5900000.0,
              "final_lower": 4700000.0,
              "final_upper": 5900000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4747173.68,
              "ml_upper": 5896255.62,
              "auto_lower": 4747173.68,
              "auto_upper": 5896255.625,
              "refseq_lower": 4778041.58,
              "refseq_upper": 5851845.74
            },
            {
              "metric": "GC_Content",
              "lower": 68.55,
              "upper": 69.41,
              "final_lower": 68.55,
              "final_upper": 69.41,
              "warn_lower": 68.69,
              "warn_upper": 69.38,
              "source": "computed",
              "ml_lower": 68.5523,
              "ml_upper": 69.4048,
              "auto_lower": 68.55227099999999,
              "auto_upper": 69.40481150000001,
              "refseq_lower": 68.62709,
              "refseq_upper": 69.321192
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 5700.0,
              "final_lower": 4500.0,
              "final_upper": 5700.0,
              "warn_lower": 4500.0,
              "warn_upper": 5500.0,
              "source": "computed",
              "ml_lower": 4527.0,
              "ml_upper": 5650.47,
              "auto_lower": 4527.0,
              "auto_upper": 5650.47,
              "refseq_lower": 4554.42,
              "refseq_upper": 5596.96
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.86,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.8942,
              "refseq_upper": 98.6334
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 7.01,
              "auto_lower": 0.0,
              "auto_upper": 1.7641000000000076,
              "refseq_lower": 0.31,
              "refseq_upper": 6.907400000000001
            },
            {
              "metric": "N50",
              "lower": 19000.0,
              "upper": null,
              "final_lower": 19000.0,
              "final_upper": null,
              "warn_lower": 29000.0,
              "warn_upper": 246241.24,
              "source": "computed",
              "ml_lower": 19886.69,
              "ml_upper": 246241.24,
              "auto_lower": 19886.69,
              "auto_upper": 246241.24000000008,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 510.0,
              "final_lower": null,
              "final_upper": 510.0,
              "warn_lower": 73.0,
              "warn_upper": 370.0,
              "source": "computed",
              "ml_lower": 73.0,
              "ml_upper": 508.47,
              "auto_lower": 73.0,
              "auto_upper": 508.47000000000025,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 96842.36,
              "warn_upper": 745555.26,
              "source": "computed",
              "ml_lower": 96842.36,
              "ml_upper": 745555.26,
              "auto_lower": 96842.36,
              "auto_upper": 745555.255,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 3154,
            "refseq_count": 77,
            "final_count": 3154,
            "filtered_out_count": 0,
            "pass_count": 2984,
            "warn_count": 241,
            "fail_count": 259
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_chelonae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4800000.0,
              "upper": 5900000.0,
              "final_lower": 4800000.0,
              "final_upper": 5900000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4855372.0,
              "ml_upper": 5800362.52,
              "auto_lower": 4923074.44,
              "auto_upper": 5800362.5200000005,
              "refseq_lower": 4863222.025,
              "refseq_upper": 5274913.42
            },
            {
              "metric": "GC_Content",
              "lower": 63.7,
              "upper": 64.2,
              "final_lower": 63.7,
              "final_upper": 64.2,
              "warn_lower": 63.84,
              "warn_upper": 64.17,
              "source": "computed",
              "ml_lower": 63.7054,
              "ml_upper": 64.1917,
              "auto_lower": 63.705424,
              "auto_upper": 64.191712,
              "refseq_lower": 63.920204500000004,
              "refseq_upper": 64.1420215
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4700.0,
              "upper": 6000.0,
              "final_lower": 4700.0,
              "final_upper": 6000.0,
              "warn_lower": 4800.0,
              "warn_upper": 5800.0,
              "source": "computed",
              "ml_lower": 4736.0,
              "ml_upper": 5915.88,
              "auto_lower": 4771.96,
              "auto_upper": 5915.88,
              "refseq_lower": 4744.595,
              "refseq_upper": 5154.015
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.63,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.63,
              "refseq_upper": 99.32
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.65,
              "auto_lower": 0.01,
              "auto_upper": 1.6512000000000049,
              "refseq_lower": 0.03,
              "refseq_upper": 0.36774999999999997
            },
            {
              "metric": "N50",
              "lower": 81000.0,
              "upper": null,
              "final_lower": 81000.0,
              "final_upper": null,
              "warn_lower": 107000.0,
              "warn_upper": 1243992.36,
              "source": "computed",
              "ml_lower": 81269.76,
              "ml_upper": 1243992.36,
              "auto_lower": 81269.76,
              "auto_upper": 1243992.3600000022,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 12.92,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 12.92,
              "ml_upper": 170.4,
              "auto_lower": 12.92,
              "auto_upper": 170.40000000000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 229895.76,
              "warn_upper": 1991547.0,
              "source": "computed",
              "ml_lower": 229895.76,
              "ml_upper": 1991547.0,
              "auto_lower": 229895.76,
              "auto_upper": 1991547.0000000028,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 185,
            "refseq_count": 10,
            "final_count": 185,
            "filtered_out_count": 0,
            "pass_count": 167,
            "warn_count": 22,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_intracellulare": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 7200000.0,
              "final_lower": 5200000.0,
              "final_upper": 7200000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 7000000.0,
              "source": "computed",
              "ml_lower": 5257760.0,
              "ml_upper": 7117056.85,
              "auto_lower": 5290662.1,
              "auto_upper": 7117056.849999999,
              "refseq_lower": 5275482.0,
              "refseq_upper": 6581453.0
            },
            {
              "metric": "GC_Content",
              "lower": 67.19,
              "upper": 68.23,
              "final_lower": 67.19,
              "final_upper": 68.23,
              "warn_lower": 67.25,
              "warn_upper": 68.11,
              "source": "computed",
              "ml_lower": 67.1901,
              "ml_upper": 68.2225,
              "auto_lower": 67.190145,
              "auto_upper": 68.185995,
              "refseq_lower": 67.40742,
              "refseq_upper": 68.2042
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 7000.0,
              "final_lower": 4900.0,
              "final_upper": 7000.0,
              "warn_lower": 5000.0,
              "warn_upper": 6700.0,
              "source": "computed",
              "ml_lower": 4941.0,
              "ml_upper": 6931.45,
              "auto_lower": 4995.65,
              "auto_upper": 6931.45,
              "refseq_lower": 4958.2,
              "refseq_upper": 6311.2
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.49,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.536,
              "refseq_upper": 97.83200000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 13.0,
              "final_lower": null,
              "final_upper": 13.0,
              "warn_lower": 0.07,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 12.23,
              "auto_lower": 0.07,
              "auto_upper": 2.202499999999998,
              "refseq_lower": 0.742,
              "refseq_upper": 12.17
            },
            {
              "metric": "N50",
              "lower": 35000.0,
              "upper": null,
              "final_lower": 35000.0,
              "final_upper": null,
              "warn_lower": 48000.0,
              "warn_upper": 612047.0,
              "source": "computed",
              "ml_lower": 35954.1,
              "ml_upper": 612047.0,
              "auto_lower": 35954.1,
              "auto_upper": 612047.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 390.0,
              "final_lower": null,
              "final_upper": 390.0,
              "warn_lower": 37.95,
              "warn_upper": 330.0,
              "source": "computed",
              "ml_lower": 37.95,
              "ml_upper": 387.55,
              "auto_lower": 37.95,
              "auto_upper": 387.5499999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 135913.6,
              "warn_upper": 1282109.35,
              "source": "computed",
              "ml_lower": 135913.6,
              "ml_upper": 1282109.35,
              "auto_lower": 135913.6,
              "auto_upper": 1282109.35,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1991,
            "refseq_count": 41,
            "final_count": 1991,
            "filtered_out_count": 0,
            "pass_count": 1850,
            "warn_count": 176,
            "fail_count": 112
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_kansasii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6300000.0,
              "upper": 6800000.0,
              "final_lower": 6300000.0,
              "final_upper": 6800000.0,
              "warn_lower": 6300000.0,
              "warn_upper": 6800000.0,
              "source": "computed",
              "ml_lower": 6325156.4,
              "ml_upper": 6793567.82,
              "auto_lower": 6325156.4,
              "auto_upper": 6793567.82,
              "refseq_lower": 6453885.22,
              "refseq_upper": 6576007.66
            },
            {
              "metric": "GC_Content",
              "lower": 65.96,
              "upper": 66.25,
              "final_lower": 65.96,
              "final_upper": 66.25,
              "warn_lower": 66.0,
              "warn_upper": 66.24,
              "source": "computed",
              "ml_lower": 65.9679,
              "ml_upper": 66.2441,
              "auto_lower": 65.967948,
              "auto_upper": 66.24408,
              "refseq_lower": 66.22928300000001,
              "refseq_upper": 66.238292
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5600.0,
              "upper": 6300.0,
              "final_lower": 5600.0,
              "final_upper": 6300.0,
              "warn_lower": 5700.0,
              "warn_upper": 6200.0,
              "source": "computed",
              "ml_lower": 5685.0,
              "ml_upper": 6252.92,
              "auto_lower": 5728.26,
              "auto_upper": 6252.92,
              "refseq_lower": 5685.06,
              "refseq_upper": 5816.73
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.26,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 99.26,
              "refseq_upper": 99.26
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.49,
              "auto_lower": 0.01,
              "auto_upper": 1.4948000000000001,
              "refseq_lower": 0.88,
              "refseq_upper": 0.88
            },
            {
              "metric": "N50",
              "lower": 30000.0,
              "upper": null,
              "final_lower": 30000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 247403.22,
              "source": "computed",
              "ml_lower": 30324.12,
              "ml_upper": 247403.22,
              "auto_lower": 30324.12,
              "auto_upper": 247403.22000000012,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 490.0,
              "final_lower": null,
              "final_upper": 490.0,
              "warn_lower": 142.04,
              "warn_upper": 440.0,
              "source": "computed",
              "ml_lower": 142.04,
              "ml_upper": 482.44,
              "auto_lower": 142.04,
              "auto_upper": 482.44000000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 120903.74,
              "warn_upper": 842927.4,
              "source": "computed",
              "ml_lower": 120903.74,
              "ml_upper": 842927.4,
              "auto_lower": 120903.74,
              "auto_upper": 842927.4,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 653,
            "refseq_count": 3,
            "final_count": 653,
            "filtered_out_count": 0,
            "pass_count": 624,
            "warn_count": 41,
            "fail_count": 59
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_marinum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5200000.0,
              "upper": 6700000.0,
              "final_lower": 5200000.0,
              "final_upper": 6700000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 6000000.0,
              "source": "computed",
              "ml_lower": 5244011.94,
              "ml_upper": 6660144.0,
              "auto_lower": 5244011.94,
              "auto_upper": 6390622.660000004,
              "refseq_lower": 6324458.46,
              "refseq_upper": 6657436.645
            },
            {
              "metric": "GC_Content",
              "lower": 65.49,
              "upper": 65.8,
              "final_lower": 65.49,
              "final_upper": 65.8,
              "warn_lower": 65.51,
              "warn_upper": 65.71,
              "source": "computed",
              "ml_lower": 65.4986,
              "ml_upper": 65.7984,
              "auto_lower": 65.4986,
              "auto_upper": 65.73953,
              "refseq_lower": 65.67187,
              "refseq_upper": 65.7976965
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5200.0,
              "upper": 6000.0,
              "final_lower": 5200.0,
              "final_upper": 6000.0,
              "warn_lower": 5200.0,
              "warn_upper": 6000.0,
              "source": "computed",
              "ml_lower": 5242.0,
              "ml_upper": 5959.32,
              "auto_lower": 5242.0,
              "auto_upper": 5959.32,
              "refseq_lower": 5285.365,
              "refseq_upper": 5588.445
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.19,
              "ml_upper": 100.0,
              "auto_lower": 99.9434,
              "auto_upper": 100.0,
              "refseq_lower": 97.19,
              "refseq_upper": 98.9972
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.09,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.09,
              "ml_upper": 2.25,
              "auto_lower": 0.09,
              "auto_upper": 1.6664000000000032,
              "refseq_lower": 0.8407,
              "refseq_upper": 2.2444
            },
            {
              "metric": "N50",
              "lower": 22000.0,
              "upper": null,
              "final_lower": 22000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 75661.62,
              "source": "computed",
              "ml_lower": 22222.78,
              "ml_upper": 75661.62,
              "auto_lower": 22222.78,
              "auto_upper": 75661.62000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 620.0,
              "final_lower": null,
              "final_upper": 620.0,
              "warn_lower": 277.7,
              "warn_upper": 590.0,
              "source": "computed",
              "ml_lower": 277.7,
              "ml_upper": 614.32,
              "auto_lower": 277.7,
              "auto_upper": 614.3200000000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 77071.08,
              "warn_upper": 232675.94,
              "source": "computed",
              "ml_lower": 77071.08,
              "ml_upper": 232675.94,
              "auto_lower": 77071.08,
              "auto_upper": 232675.9400000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1069,
            "refseq_count": 8,
            "final_count": 1069,
            "filtered_out_count": 0,
            "pass_count": 986,
            "warn_count": 139,
            "fail_count": 45
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_smegmatis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6800000.0,
              "upper": 7200000.0,
              "final_lower": 6800000.0,
              "final_upper": 7200000.0,
              "warn_lower": 6800000.0,
              "warn_upper": 7000000.0,
              "source": "computed",
              "ml_lower": 6828216.4,
              "ml_upper": 7119169.0,
              "auto_lower": 6828216.4,
              "auto_upper": 6907835.975,
              "refseq_lower": 6891657.485,
              "refseq_upper": 7114288.13
            },
            {
              "metric": "GC_Content",
              "lower": 67.29,
              "upper": 67.46,
              "final_lower": 67.29,
              "final_upper": 67.46,
              "warn_lower": 67.34,
              "warn_upper": 67.45,
              "source": "computed",
              "ml_lower": 67.291,
              "ml_upper": 67.4523,
              "auto_lower": 67.2909875,
              "auto_upper": 67.45232750000001,
              "refseq_lower": 67.31233,
              "refseq_upper": 67.403
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6500.0,
              "upper": 6900.0,
              "final_lower": 6500.0,
              "final_upper": 6900.0,
              "warn_lower": 6500.0,
              "warn_upper": 6700.0,
              "source": "computed",
              "ml_lower": 6547.95,
              "ml_upper": 6835.0,
              "auto_lower": 6547.95,
              "auto_upper": 6705.075,
              "refseq_lower": 6611.105,
              "refseq_upper": 6830.07
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.16,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.1889,
              "refseq_upper": 98.76
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.18,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.18,
              "ml_upper": 4.46,
              "auto_lower": 0.18,
              "auto_upper": 0.9444999999999869,
              "refseq_lower": 0.90125,
              "refseq_upper": 4.401349999999999
            },
            {
              "metric": "N50",
              "lower": 67000.0,
              "upper": null,
              "final_lower": 67000.0,
              "final_upper": null,
              "warn_lower": 79000.0,
              "warn_upper": 184305.6,
              "source": "computed",
              "ml_lower": 67750.45,
              "ml_upper": 184305.6,
              "auto_lower": 67750.45,
              "auto_upper": 184305.5999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 270.0,
              "final_lower": null,
              "final_upper": 270.0,
              "warn_lower": 111.98,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 111.98,
              "ml_upper": 262.02,
              "auto_lower": 111.975,
              "auto_upper": 262.025,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 182990.75,
              "warn_upper": 520717.45,
              "source": "computed",
              "ml_lower": 182990.75,
              "ml_upper": 520717.45,
              "auto_lower": 182990.75,
              "auto_upper": 520717.4499999982,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 396,
            "refseq_count": 18,
            "final_count": 396,
            "filtered_out_count": 0,
            "pass_count": 375,
            "warn_count": 23,
            "fail_count": 40
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_tuberculosis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 4600000.0,
              "final_lower": 4200000.0,
              "final_upper": 4600000.0,
              "warn_lower": 4200000.0,
              "warn_upper": 4500000.0,
              "source": "computed",
              "ml_lower": 4275042.0,
              "ml_upper": 4516435.0,
              "auto_lower": 4275042.0,
              "auto_upper": 4423800.0,
              "refseq_lower": 4339525.15,
              "refseq_upper": 4459269.81
            },
            {
              "metric": "GC_Content",
              "lower": 65.21,
              "upper": 65.66,
              "final_lower": 65.21,
              "final_upper": 65.66,
              "warn_lower": 65.38,
              "warn_upper": 65.63,
              "source": "computed",
              "ml_lower": 65.2152,
              "ml_upper": 65.6557,
              "auto_lower": 65.328,
              "auto_upper": 65.6471,
              "refseq_lower": 65.399979,
              "refseq_upper": 65.651718
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4000.0,
              "upper": 4600.0,
              "final_lower": 4000.0,
              "final_upper": 4600.0,
              "warn_lower": 4000.0,
              "warn_upper": 4300.0,
              "source": "computed",
              "ml_lower": 4008.0,
              "ml_upper": 4515.0,
              "auto_lower": 4046.0,
              "auto_upper": 4275.0,
              "refseq_lower": 4074.475,
              "refseq_upper": 4263.555
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.18,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.25495000000001,
              "refseq_upper": 97.95
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.1,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.1,
              "ml_upper": 2.84,
              "auto_lower": 0.27,
              "auto_upper": 1.81,
              "refseq_lower": 0.31,
              "refseq_upper": 1.6829999999999972
            },
            {
              "metric": "N50",
              "lower": 34000.0,
              "upper": null,
              "final_lower": 34000.0,
              "final_upper": null,
              "warn_lower": 45000.0,
              "warn_upper": 180775.0,
              "source": "computed",
              "ml_lower": 34668.18,
              "ml_upper": 180775.0,
              "auto_lower": 34668.185,
              "auto_upper": 180775.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 310.0,
              "final_lower": null,
              "final_upper": 310.0,
              "warn_lower": 81.0,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 81.0,
              "ml_upper": 310.0,
              "auto_lower": 81.0,
              "auto_upper": 310.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 113882.67,
              "warn_upper": 427714.33,
              "source": "computed",
              "ml_lower": 113882.67,
              "ml_upper": 427714.33,
              "auto_lower": 113882.67,
              "auto_upper": 427714.33,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 170368,
            "refseq_count": 500,
            "final_count": 170368,
            "filtered_out_count": 0,
            "pass_count": 158145,
            "warn_count": 12446,
            "fail_count": 8968
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycobacterium_xenopi": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 4800000.0,
              "final_lower": 4700000.0,
              "final_upper": 4800000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 4800000.0,
              "source": "computed",
              "ml_lower": 4761469.0,
              "ml_upper": 4761611.0,
              "auto_lower": 4761469.71,
              "auto_upper": 4761610.29,
              "refseq_lower": 4917655.0,
              "refseq_upper": 4917655.0
            },
            {
              "metric": "GC_Content",
              "lower": 65.9,
              "upper": 65.91,
              "final_lower": 65.9,
              "final_upper": 65.91,
              "warn_lower": 65.9,
              "warn_upper": 65.91,
              "source": "computed",
              "ml_lower": 65.9034,
              "ml_upper": 65.9035,
              "auto_lower": 65.90338017711537,
              "auto_upper": 65.9034512251,
              "refseq_lower": 65.9122,
              "refseq_upper": 65.9122
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4800.0,
              "upper": 4900.0,
              "final_lower": 4800.0,
              "final_upper": 4900.0,
              "warn_lower": 4800.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 4814.0,
              "ml_upper": 4814.0,
              "auto_lower": 4814.0,
              "auto_upper": 4814.0,
              "refseq_lower": 4771.905,
              "refseq_upper": 4951.095
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.93,
              "source": "computed",
              "ml_lower": 99.92,
              "ml_upper": 99.93,
              "auto_lower": 99.92005,
              "auto_upper": 99.92995,
              "refseq_lower": 91.41,
              "refseq_upper": 91.41
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 1.19,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 1.19,
              "ml_upper": 1.19,
              "auto_lower": 1.19,
              "auto_upper": 1.19,
              "refseq_lower": 0.93,
              "refseq_upper": 0.93
            },
            {
              "metric": "N50",
              "lower": 88000.0,
              "upper": null,
              "final_lower": 88000.0,
              "final_upper": null,
              "warn_lower": 88000.0,
              "warn_upper": 88219.0,
              "source": "computed",
              "ml_lower": 88219.0,
              "ml_upper": 88219.0,
              "auto_lower": 88219.0,
              "auto_upper": 88219.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 160.0,
              "final_lower": null,
              "final_upper": 160.0,
              "warn_lower": 156.0,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 156.0,
              "ml_upper": 156.0,
              "auto_lower": 156.0,
              "auto_upper": 156.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 364228.0,
              "warn_upper": 364228.0,
              "source": "computed",
              "ml_lower": 364228.0,
              "ml_upper": 364228.0,
              "auto_lower": 364228.0,
              "auto_upper": 364228.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2,
            "refseq_count": 2,
            "final_count": 2,
            "filtered_out_count": 0,
            "pass_count": 0,
            "warn_count": 0,
            "fail_count": 28
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Mycoplasma_capri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 500000.0,
              "upper": 1100000.0,
              "final_lower": 500000.0,
              "final_upper": 1100000.0,
              "warn_lower": 500000.0,
              "warn_upper": 1100000.0,
              "source": "computed",
              "ml_lower": 538788.64,
              "ml_upper": 1082254.32,
              "auto_lower": 538788.64,
              "auto_upper": 1082254.32,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 23.7,
              "upper": 24.13,
              "final_lower": 23.7,
              "final_upper": 24.13,
              "warn_lower": 23.71,
              "warn_upper": 24.13,
              "source": "computed",
              "ml_lower": 23.7,
              "ml_upper": 24.13,
              "auto_lower": 23.703436,
              "auto_upper": 24.13168,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 400.0,
              "upper": 1000.0,
              "final_lower": 400.0,
              "final_upper": 1000.0,
              "warn_lower": 400.0,
              "warn_upper": 1000.0,
              "source": "computed",
              "ml_lower": 465.0,
              "ml_upper": 951.56,
              "auto_lower": 465.0,
              "auto_upper": 951.5600000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 85.0,
              "upper": null,
              "final_lower": 85.0,
              "final_upper": null,
              "warn_lower": 85.0,
              "warn_upper": 99.87,
              "source": "computed",
              "ml_lower": 85.55,
              "ml_upper": 99.87,
              "auto_lower": 85.546,
              "auto_upper": 99.8684,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.37,
              "auto_lower": 0.0,
              "auto_upper": 1.3736000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 19000.0,
              "upper": null,
              "final_lower": 19000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 221770.44,
              "source": "computed",
              "ml_lower": 19177.96,
              "ml_upper": 221770.44,
              "auto_lower": 19177.96,
              "auto_upper": 221770.44000000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 140.0,
              "final_lower": null,
              "final_upper": 140.0,
              "warn_lower": 6.44,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 6.44,
              "ml_upper": 137.96,
              "auto_lower": 6.4399999999999995,
              "auto_upper": 137.96000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 44656.92,
              "warn_upper": 269082.12,
              "source": "computed",
              "ml_lower": 44656.92,
              "ml_upper": 269082.12,
              "auto_lower": 44656.92,
              "auto_upper": 269082.12,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 145,
            "refseq_count": 0,
            "final_count": 145,
            "filtered_out_count": 0,
            "pass_count": 152,
            "warn_count": 9,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "frac_incomplete",
                  "flag": "error",
                  "fraction": 0.3103,
                  "count": 45,
                  "n": 145,
                  "interpretation": null
                },
                {
                  "signal": "frac_short_genome",
                  "flag": "error",
                  "fraction": 0.3103,
                  "count": 45,
                  "n": 145,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Mycoplasmoides_pneumoniae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 700000.0,
              "upper": 900000.0,
              "final_lower": 700000.0,
              "final_upper": 900000.0,
              "warn_lower": 800000.0,
              "warn_upper": 900000.0,
              "source": "computed",
              "ml_lower": 799485.53,
              "ml_upper": 857799.0,
              "auto_lower": 799485.53,
              "auto_upper": 832212.58,
              "refseq_lower": 808082.425,
              "refseq_upper": 841277.5500000002
            },
            {
              "metric": "GC_Content",
              "lower": 39.79,
              "upper": 40.2,
              "final_lower": 39.79,
              "final_upper": 40.2,
              "warn_lower": 39.8,
              "warn_upper": 40.07,
              "source": "computed",
              "ml_lower": 39.7932,
              "ml_upper": 40.1984,
              "auto_lower": 39.793191,
              "auto_upper": 40.198392999999996,
              "refseq_lower": 39.8963275,
              "refseq_upper": 40.0118675
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 700.0,
              "upper": 900.0,
              "final_lower": 700.0,
              "final_upper": 900.0,
              "warn_lower": 700.0,
              "warn_upper": 900.0,
              "source": "computed",
              "ml_lower": 748.0,
              "ml_upper": 822.85,
              "auto_lower": 756.92,
              "auto_upper": 822.85,
              "refseq_lower": 752.275,
              "refseq_upper": 793.1250000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 97.0,
              "warn_upper": 99.65,
              "source": "computed",
              "ml_lower": 96.1,
              "ml_upper": 99.65,
              "auto_lower": 96.73060000000001,
              "auto_upper": 99.6477,
              "refseq_lower": 96.34224999999999,
              "refseq_upper": 99.64
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 6.35,
              "auto_lower": 0.0269,
              "auto_upper": 0.26,
              "refseq_lower": 0.33025,
              "refseq_upper": 6.31975
            },
            {
              "metric": "N50",
              "lower": 49000.0,
              "upper": null,
              "final_lower": 49000.0,
              "final_upper": null,
              "warn_lower": 55000.0,
              "warn_upper": 543044.77,
              "source": "computed",
              "ml_lower": 49948.66,
              "ml_upper": 543044.77,
              "auto_lower": 49948.66,
              "auto_upper": 543044.7700000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 10.23,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 10.23,
              "ml_upper": 91.0,
              "auto_lower": 10.23,
              "auto_upper": 91.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 116919.93,
              "warn_upper": 543044.77,
              "source": "computed",
              "ml_lower": 116919.93,
              "ml_upper": 543044.77,
              "auto_lower": 116919.93,
              "auto_upper": 543044.7700000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 247,
            "refseq_count": 96,
            "final_count": 247,
            "filtered_out_count": 0,
            "pass_count": 226,
            "warn_count": 23,
            "fail_count": 23
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Mycoplasmopsis_bovis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 800000.0,
              "upper": 1200000.0,
              "final_lower": 800000.0,
              "final_upper": 1200000.0,
              "warn_lower": 900000.0,
              "warn_upper": 1100000.0,
              "source": "computed",
              "ml_lower": 895342.72,
              "ml_upper": 1165292.0,
              "auto_lower": 895342.725,
              "auto_upper": 1037305.25,
              "refseq_lower": 944753.625,
              "refseq_upper": 1163499.385
            },
            {
              "metric": "GC_Content",
              "lower": 28.99,
              "upper": 29.64,
              "final_lower": 28.99,
              "final_upper": 29.64,
              "warn_lower": 29.24,
              "warn_upper": 29.58,
              "source": "computed",
              "ml_lower": 28.9983,
              "ml_upper": 29.6338,
              "auto_lower": 29.233985,
              "auto_upper": 29.633815,
              "refseq_lower": 29.0071935,
              "refseq_upper": 29.466455
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 800.0,
              "upper": 1100.0,
              "final_lower": 800.0,
              "final_upper": 1100.0,
              "warn_lower": 800.0,
              "warn_upper": 1100.0,
              "source": "computed",
              "ml_lower": 804.85,
              "ml_upper": 1038.58,
              "auto_lower": 804.85,
              "auto_upper": 1038.575,
              "refseq_lower": 827.42,
              "refseq_upper": 1016.925
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.92,
              "source": "computed",
              "ml_lower": 91.41,
              "ml_upper": 99.92,
              "auto_lower": 98.91675000000001,
              "auto_upper": 99.92,
              "refseq_lower": 91.90005,
              "refseq_upper": 98.8395
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.07,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 8.11,
              "auto_lower": 0.5,
              "auto_upper": 1.331500000000001,
              "refseq_lower": 0.07,
              "refseq_upper": 7.898249999999998
            },
            {
              "metric": "N50",
              "lower": 8000.0,
              "upper": null,
              "final_lower": 8000.0,
              "final_upper": null,
              "warn_lower": 10000.0,
              "warn_upper": 36863.0,
              "source": "computed",
              "ml_lower": 8654.83,
              "ml_upper": 36863.0,
              "auto_lower": 8654.825,
              "auto_upper": 36863.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 270.0,
              "final_lower": null,
              "final_upper": 270.0,
              "warn_lower": 102.42,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 102.42,
              "ml_upper": 268.58,
              "auto_lower": 102.425,
              "auto_upper": 268.57500000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 29044.55,
              "warn_upper": 107635.18,
              "source": "computed",
              "ml_lower": 29044.55,
              "ml_upper": 107635.18,
              "auto_lower": 29044.55,
              "auto_upper": 107635.17500000015,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1286,
            "refseq_count": 122,
            "final_count": 1286,
            "filtered_out_count": 0,
            "pass_count": 1232,
            "warn_count": 109,
            "fail_count": 70
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Neisseria_bergeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2300000.0,
              "final_lower": 1900000.0,
              "final_upper": 2300000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1998511.76,
              "ml_upper": 2241652.84,
              "auto_lower": 1998511.76,
              "auto_upper": 2241652.8449999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 51.61,
              "upper": 52.2,
              "final_lower": 51.61,
              "final_upper": 52.2,
              "warn_lower": 51.68,
              "warn_upper": 52.18,
              "source": "computed",
              "ml_lower": 51.61,
              "ml_upper": 52.2,
              "auto_lower": 51.610596,
              "auto_upper": 52.20114,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2200.0,
              "final_lower": 1800.0,
              "final_upper": 2200.0,
              "warn_lower": 1800.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1861.64,
              "ml_upper": 2169.48,
              "auto_lower": 1861.635,
              "auto_upper": 2169.475,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.98,
              "ml_upper": 100.0,
              "auto_lower": 99.97545,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.11,
              "auto_lower": 0.01,
              "auto_upper": 0.11,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 97000.0,
              "upper": null,
              "final_lower": 97000.0,
              "final_upper": null,
              "warn_lower": 102000.0,
              "warn_upper": 526586.89,
              "source": "computed",
              "ml_lower": 97518.94,
              "ml_upper": 526586.89,
              "auto_lower": 97518.945,
              "auto_upper": 526586.8949999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 10.54,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 10.54,
              "ml_upper": 91.0,
              "auto_lower": 10.545,
              "auto_upper": 91.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 212727.46,
              "warn_upper": 1009017.6,
              "source": "computed",
              "ml_lower": 212727.46,
              "ml_upper": 1009017.6,
              "auto_lower": 212727.465,
              "auto_upper": 1009017.595,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 110,
            "refseq_count": 0,
            "final_count": 110,
            "filtered_out_count": 0,
            "pass_count": 108,
            "warn_count": 10,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2300000.0,
              "final_lower": 1900000.0,
              "final_upper": 2300000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1998511.76,
              "ml_upper": 2241652.84,
              "auto_lower": 1998511.76,
              "auto_upper": 2241652.8449999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 51.61,
              "upper": 52.2,
              "final_lower": 51.61,
              "final_upper": 52.2,
              "warn_lower": 51.68,
              "warn_upper": 52.18,
              "source": "computed",
              "ml_lower": 51.61,
              "ml_upper": 52.2,
              "auto_lower": 51.610596,
              "auto_upper": 52.20114,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2200.0,
              "final_lower": 1800.0,
              "final_upper": 2200.0,
              "warn_lower": 1800.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1861.64,
              "ml_upper": 2169.48,
              "auto_lower": 1861.635,
              "auto_upper": 2169.475,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.98,
              "ml_upper": 100.0,
              "auto_lower": 99.97545,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "pinned",
              "ml_lower": 0.01,
              "ml_upper": 0.11,
              "auto_lower": 0.01,
              "auto_upper": 0.11,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 97000.0,
              "upper": null,
              "final_lower": 97000.0,
              "final_upper": null,
              "warn_lower": 102000.0,
              "warn_upper": 526586.89,
              "source": "computed",
              "ml_lower": 97518.94,
              "ml_upper": 526586.89,
              "auto_lower": 97518.945,
              "auto_upper": 526586.8949999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 10.54,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 10.54,
              "ml_upper": 91.0,
              "auto_lower": 10.545,
              "auto_upper": 91.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 212727.46,
              "warn_upper": 1009017.6,
              "source": "computed",
              "ml_lower": 212727.46,
              "ml_upper": 1009017.6,
              "auto_lower": 212727.465,
              "auto_upper": 1009017.595,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 110,
            "refseq_count": 0,
            "final_count": 110,
            "filtered_out_count": 0,
            "pass_count": 108,
            "warn_count": 10,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Neisseria_flavescens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2500000.0,
              "final_lower": 2100000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2151221.8,
              "ml_upper": 2416431.55,
              "auto_lower": 2151221.8,
              "auto_upper": 2416431.55,
              "refseq_lower": 2232591.68,
              "refseq_upper": 2307605.96
            },
            {
              "metric": "GC_Content",
              "lower": 48.8,
              "upper": 49.43,
              "final_lower": 48.8,
              "final_upper": 49.43,
              "warn_lower": 48.92,
              "warn_upper": 49.42,
              "source": "computed",
              "ml_lower": 48.8043,
              "ml_upper": 49.427,
              "auto_lower": 48.804275,
              "auto_upper": 49.42704,
              "refseq_lower": 49.049144000000005,
              "refseq_upper": 49.308821
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2400.0,
              "final_lower": 2000.0,
              "final_upper": 2400.0,
              "warn_lower": 2000.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2018.9,
              "ml_upper": 2379.9,
              "auto_lower": 2018.9,
              "auto_upper": 2379.9,
              "refseq_lower": 2261.49,
              "refseq_upper": 2327.82
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.92,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.94500000000001,
              "refseq_upper": 98.20209999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 3.26,
              "auto_lower": 0.0055000000000000005,
              "auto_upper": 0.7025000000000001,
              "refseq_lower": 0.48879999999999996,
              "refseq_upper": 3.2409999999999997
            },
            {
              "metric": "N50",
              "lower": 48000.0,
              "upper": null,
              "final_lower": 48000.0,
              "final_upper": null,
              "warn_lower": 68000.0,
              "warn_upper": 337619.4,
              "source": "computed",
              "ml_lower": 48345.7,
              "ml_upper": 337619.4,
              "auto_lower": 48345.7,
              "auto_upper": 337619.4,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 24.75,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 24.75,
              "ml_upper": 122.65,
              "auto_lower": 24.75,
              "auto_upper": 122.6500000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 121994.85,
              "warn_upper": 627992.85,
              "source": "computed",
              "ml_lower": 121994.85,
              "ml_upper": 627992.85,
              "auto_lower": 121994.85,
              "auto_upper": 627992.8500000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 111,
            "refseq_count": 3,
            "final_count": 111,
            "filtered_out_count": 0,
            "pass_count": 109,
            "warn_count": 11,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2500000.0,
              "final_lower": 2100000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2151221.8,
              "ml_upper": 2416431.55,
              "auto_lower": 2151221.8,
              "auto_upper": 2416431.55,
              "refseq_lower": 2232591.68,
              "refseq_upper": 2307605.96
            },
            {
              "metric": "GC_Content",
              "lower": 48.8,
              "upper": 49.43,
              "final_lower": 48.8,
              "final_upper": 49.43,
              "warn_lower": 48.92,
              "warn_upper": 49.42,
              "source": "computed",
              "ml_lower": 48.8043,
              "ml_upper": 49.427,
              "auto_lower": 48.804275,
              "auto_upper": 49.42704,
              "refseq_lower": 49.049144000000005,
              "refseq_upper": 49.308821
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2400.0,
              "final_lower": 2000.0,
              "final_upper": 2400.0,
              "warn_lower": 2000.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2018.9,
              "ml_upper": 2379.9,
              "auto_lower": 2018.9,
              "auto_upper": 2379.9,
              "refseq_lower": 2261.49,
              "refseq_upper": 2327.82
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "pinned",
              "ml_lower": 94.92,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.94500000000001,
              "refseq_upper": 98.20209999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "pinned",
              "ml_lower": 0.01,
              "ml_upper": 3.26,
              "auto_lower": 0.0055000000000000005,
              "auto_upper": 0.7025000000000001,
              "refseq_lower": 0.48879999999999996,
              "refseq_upper": 3.2409999999999997
            },
            {
              "metric": "N50",
              "lower": 48000.0,
              "upper": null,
              "final_lower": 48000.0,
              "final_upper": null,
              "warn_lower": 68000.0,
              "warn_upper": 337619.4,
              "source": "computed",
              "ml_lower": 48345.7,
              "ml_upper": 337619.4,
              "auto_lower": 48345.7,
              "auto_upper": 337619.4,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 24.75,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 24.75,
              "ml_upper": 122.65,
              "auto_lower": 24.75,
              "auto_upper": 122.6500000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 121994.85,
              "warn_upper": 627992.85,
              "source": "computed",
              "ml_lower": 121994.85,
              "ml_upper": 627992.85,
              "auto_lower": 121994.85,
              "auto_upper": 627992.8500000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 111,
            "refseq_count": 3,
            "final_count": 111,
            "filtered_out_count": 0,
            "pass_count": 109,
            "warn_count": 11,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Neisseria_gonorrhoeae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2400000.0,
              "final_lower": 2000000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 2076948.29,
              "ml_upper": 2309160.0,
              "auto_lower": 2076948.29,
              "auto_upper": 2220991.35,
              "refseq_lower": 2159331.86,
              "refseq_upper": 2307900.355
            },
            {
              "metric": "GC_Content",
              "lower": 52.06,
              "upper": 52.75,
              "final_lower": 52.06,
              "final_upper": 52.75,
              "warn_lower": 52.32,
              "warn_upper": 52.7,
              "source": "computed",
              "ml_lower": 52.061,
              "ml_upper": 52.7432,
              "auto_lower": 52.2802,
              "auto_upper": 52.743238000000005,
              "refseq_lower": 52.1234,
              "refseq_upper": 52.6994395
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2500.0,
              "final_lower": 2000.0,
              "final_upper": 2500.0,
              "warn_lower": 2100.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 2086.0,
              "ml_upper": 2476.0,
              "auto_lower": 2086.0,
              "auto_upper": 2300.0,
              "refseq_lower": 2254.355,
              "refseq_upper": 2463.225
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.87,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 97.36905,
              "refseq_upper": 99.35
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 2.14,
              "auto_lower": 0.05,
              "auto_upper": 0.26,
              "refseq_lower": 0.19,
              "refseq_upper": 1.8547999999999956
            },
            {
              "metric": "N50",
              "lower": 29000.0,
              "upper": null,
              "final_lower": 29000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 88974.47,
              "source": "computed",
              "ml_lower": 29856.62,
              "ml_upper": 88974.47,
              "auto_lower": 29856.62,
              "auto_upper": 88974.47000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 100.0,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 222.0,
              "auto_lower": 100.0,
              "auto_upper": 222.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 93045.0,
              "warn_upper": 292983.61,
              "source": "computed",
              "ml_lower": 93045.0,
              "ml_upper": 292983.61,
              "auto_lower": 93045.0,
              "auto_upper": 292983.6100000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 53163,
            "refseq_count": 272,
            "final_count": 53163,
            "filtered_out_count": 0,
            "pass_count": 49415,
            "warn_count": 5376,
            "fail_count": 2554
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2400000.0,
              "final_lower": 2000000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 2076948.29,
              "ml_upper": 2309160.0,
              "auto_lower": 2076948.29,
              "auto_upper": 2220991.35,
              "refseq_lower": 2159331.86,
              "refseq_upper": 2307900.355
            },
            {
              "metric": "GC_Content",
              "lower": 52.06,
              "upper": 52.75,
              "final_lower": 52.06,
              "final_upper": 52.75,
              "warn_lower": 52.32,
              "warn_upper": 52.7,
              "source": "computed",
              "ml_lower": 52.061,
              "ml_upper": 52.7432,
              "auto_lower": 52.2802,
              "auto_upper": 52.743238000000005,
              "refseq_lower": 52.1234,
              "refseq_upper": 52.6994395
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2500.0,
              "final_lower": 1900.0,
              "final_upper": 2500.0,
              "warn_lower": 2100.0,
              "warn_upper": 2300.0,
              "source": "pinned",
              "ml_lower": 2086.0,
              "ml_upper": 2476.0,
              "auto_lower": 2086.0,
              "auto_upper": 2300.0,
              "refseq_lower": 2254.355,
              "refseq_upper": 2463.225
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.87,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 97.36905,
              "refseq_upper": 99.35
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 2.14,
              "auto_lower": 0.05,
              "auto_upper": 0.26,
              "refseq_lower": 0.19,
              "refseq_upper": 1.8547999999999956
            },
            {
              "metric": "N50",
              "lower": 25000.0,
              "upper": null,
              "final_lower": 25000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 88974.47,
              "source": "pinned",
              "ml_lower": 29856.62,
              "ml_upper": 88974.47,
              "auto_lower": 29856.62,
              "auto_upper": 88974.47000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 100.0,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 222.0,
              "auto_lower": 100.0,
              "auto_upper": 222.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 93045.0,
              "warn_upper": 292983.61,
              "source": "computed",
              "ml_lower": 93045.0,
              "ml_upper": 292983.61,
              "auto_lower": 93045.0,
              "auto_upper": 292983.6100000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 53163,
            "refseq_count": 272,
            "final_count": 53163,
            "filtered_out_count": 0,
            "pass_count": 49415,
            "warn_count": 5376,
            "fail_count": 2554
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Neisseria_lactamica": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2300000.0,
              "final_lower": 2100000.0,
              "final_upper": 2300000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 2100497.16,
              "ml_upper": 2271914.93,
              "auto_lower": 2100497.16,
              "auto_upper": 2271914.93,
              "refseq_lower": 2147505.49,
              "refseq_upper": 2220300.27
            },
            {
              "metric": "GC_Content",
              "lower": 51.91,
              "upper": 52.63,
              "final_lower": 51.91,
              "final_upper": 52.63,
              "warn_lower": 51.98,
              "warn_upper": 52.46,
              "source": "computed",
              "ml_lower": 51.9109,
              "ml_upper": 52.627,
              "auto_lower": 51.910871,
              "auto_upper": 52.517855999999995,
              "refseq_lower": 52.1234085,
              "refseq_upper": 52.622683
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2300.0,
              "final_lower": 1900.0,
              "final_upper": 2300.0,
              "warn_lower": 1900.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1931.61,
              "ml_upper": 2264.0,
              "auto_lower": 1931.61,
              "auto_upper": 2189.3400000000006,
              "refseq_lower": 2164.33,
              "refseq_upper": 2263.25
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.04,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.04045,
              "refseq_upper": 99.567
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.3,
              "auto_lower": 0.01,
              "auto_upper": 0.21,
              "refseq_lower": 0.10300000000000001,
              "refseq_upper": 0.3
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 66000.0,
              "warn_upper": 328892.73,
              "source": "computed",
              "ml_lower": 59668.92,
              "ml_upper": 328892.73,
              "auto_lower": 59668.92,
              "auto_upper": 328892.73,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 29.61,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 29.61,
              "ml_upper": 113.0,
              "auto_lower": 29.61,
              "auto_upper": 113.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 127644.06,
              "warn_upper": 644317.26,
              "source": "computed",
              "ml_lower": 127644.06,
              "ml_upper": 644317.26,
              "auto_lower": 127644.06,
              "auto_upper": 644317.260000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1323,
            "refseq_count": 4,
            "final_count": 1323,
            "filtered_out_count": 0,
            "pass_count": 1265,
            "warn_count": 84,
            "fail_count": 74
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2400000.0,
              "final_lower": 2100000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2300000.0,
              "source": "pinned",
              "ml_lower": 2100497.16,
              "ml_upper": 2271914.93,
              "auto_lower": 2100497.16,
              "auto_upper": 2271914.93,
              "refseq_lower": 2147505.49,
              "refseq_upper": 2220300.27
            },
            {
              "metric": "GC_Content",
              "lower": 51.91,
              "upper": 52.63,
              "final_lower": 51.91,
              "final_upper": 52.63,
              "warn_lower": 51.98,
              "warn_upper": 52.46,
              "source": "computed",
              "ml_lower": 51.9109,
              "ml_upper": 52.627,
              "auto_lower": 51.910871,
              "auto_upper": 52.517855999999995,
              "refseq_lower": 52.1234085,
              "refseq_upper": 52.622683
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2800.0,
              "final_lower": 1800.0,
              "final_upper": 2800.0,
              "warn_lower": 1900.0,
              "warn_upper": 2200.0,
              "source": "pinned",
              "ml_lower": 1931.61,
              "ml_upper": 2264.0,
              "auto_lower": 1931.61,
              "auto_upper": 2189.3400000000006,
              "refseq_lower": 2164.33,
              "refseq_upper": 2263.25
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.04,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.04045,
              "refseq_upper": 99.567
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "pinned",
              "ml_lower": 0.01,
              "ml_upper": 0.3,
              "auto_lower": 0.01,
              "auto_upper": 0.21,
              "refseq_lower": 0.10300000000000001,
              "refseq_upper": 0.3
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 66000.0,
              "warn_upper": 328892.73,
              "source": "computed",
              "ml_lower": 59668.92,
              "ml_upper": 328892.73,
              "auto_lower": 59668.92,
              "auto_upper": 328892.73,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 29.61,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 29.61,
              "ml_upper": 113.0,
              "auto_lower": 29.61,
              "auto_upper": 113.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 127644.06,
              "warn_upper": 644317.26,
              "source": "computed",
              "ml_lower": 127644.06,
              "ml_upper": 644317.26,
              "auto_lower": 127644.06,
              "auto_upper": 644317.260000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1323,
            "refseq_count": 4,
            "final_count": 1323,
            "filtered_out_count": 0,
            "pass_count": 1265,
            "warn_count": 84,
            "fail_count": 74
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Neisseria_meningitidis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2400000.0,
              "final_lower": 2000000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 2032579.16,
              "ml_upper": 2397461.0,
              "auto_lower": 2032579.16,
              "auto_upper": 2248260.44,
              "refseq_lower": 2139084.46,
              "refseq_upper": 2347340.0900000003
            },
            {
              "metric": "GC_Content",
              "lower": 51.05,
              "upper": 52.15,
              "final_lower": 51.05,
              "final_upper": 52.15,
              "warn_lower": 51.42,
              "warn_upper": 52.08,
              "source": "computed",
              "ml_lower": 51.0506,
              "ml_upper": 52.143,
              "auto_lower": 51.303188,
              "auto_upper": 52.143036,
              "refseq_lower": 51.198398000000005,
              "refseq_upper": 51.953431
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2500.0,
              "final_lower": 1900.0,
              "final_upper": 2500.0,
              "warn_lower": 1900.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1925.0,
              "ml_upper": 2423.0,
              "auto_lower": 1925.0,
              "auto_upper": 2199.0,
              "refseq_lower": 2137.83,
              "refseq_upper": 2356.07
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.33,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 97.5094,
              "refseq_upper": 99.4955
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.47,
              "auto_lower": 0.0,
              "auto_upper": 0.12,
              "refseq_lower": 0.15,
              "refseq_upper": 1.4488000000000034
            },
            {
              "metric": "N50",
              "lower": 19000.0,
              "upper": null,
              "final_lower": 19000.0,
              "final_upper": null,
              "warn_lower": 23000.0,
              "warn_upper": 79132.0,
              "source": "computed",
              "ml_lower": 19859.2,
              "ml_upper": 79132.0,
              "auto_lower": 19859.2,
              "auto_upper": 79132.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 310.0,
              "final_lower": null,
              "final_upper": 310.0,
              "warn_lower": 99.0,
              "warn_upper": 270.0,
              "source": "computed",
              "ml_lower": 99.0,
              "ml_upper": 302.0,
              "auto_lower": 99.0,
              "auto_upper": 302.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 67968.0,
              "warn_upper": 273518.68,
              "source": "computed",
              "ml_lower": 67968.0,
              "ml_upper": 273518.68,
              "auto_lower": 67968.0,
              "auto_upper": 273518.68,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 31977,
            "refseq_count": 139,
            "final_count": 31977,
            "filtered_out_count": 0,
            "pass_count": 30660,
            "warn_count": 3279,
            "fail_count": 1877
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [
              "Survey respondents flagged uncertainty about the no_of_contigs upper bound \u2014 some high-quality genomes in their dataset are excluded by the current threshold (Nov 2025 feedback survey). Pending follow-up before any revision."
            ],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2300000.0,
              "final_lower": 1800000.0,
              "final_upper": 2300000.0,
              "warn_lower": 2033458.67,
              "warn_upper": 2397461.0,
              "source": "pinned",
              "ml_lower": 2033458.67,
              "ml_upper": 2397461.0,
              "auto_lower": 2033458.67,
              "auto_upper": 2250575.02,
              "refseq_lower": 2137882.42,
              "refseq_upper": 2351698.43
            },
            {
              "metric": "GC_Content",
              "lower": 50.0,
              "upper": 54.0,
              "final_lower": 50.0,
              "final_upper": 54.0,
              "warn_lower": 51.05,
              "warn_upper": 52.14,
              "source": "computed",
              "ml_lower": 51.05,
              "ml_upper": 52.14,
              "auto_lower": 51.291116,
              "auto_upper": 52.1412,
              "refseq_lower": 51.185546,
              "refseq_upper": 51.954637000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2700.0,
              "final_lower": 1700.0,
              "final_upper": 2700.0,
              "warn_lower": 1926.0,
              "warn_upper": 2420.0,
              "source": "computed",
              "ml_lower": 1926.0,
              "ml_upper": 2420.0,
              "auto_lower": 1926.0,
              "auto_upper": 2201.0,
              "refseq_lower": 2136.15,
              "refseq_upper": 2360.1500000000005
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 97.12,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.12,
              "ml_upper": 100.0,
              "auto_lower": 99.96,
              "auto_upper": 100.0,
              "refseq_lower": 97.2523,
              "refseq_upper": 99.4985
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 2.47,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.47,
              "auto_lower": 0.0,
              "auto_upper": 0.12,
              "refseq_lower": 0.15,
              "refseq_upper": 1.537600000000007
            },
            {
              "metric": "N50",
              "lower": 16000.0,
              "upper": null,
              "final_lower": 16000.0,
              "final_upper": null,
              "warn_lower": 18777.88,
              "warn_upper": 78040.42,
              "source": "computed",
              "ml_lower": 18777.88,
              "ml_upper": 78040.42,
              "auto_lower": 18777.88,
              "auto_upper": 78040.42,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 340.0,
              "final_lower": null,
              "final_upper": 340.0,
              "warn_lower": 101.0,
              "warn_upper": 306.0,
              "source": "computed",
              "ml_lower": 101.0,
              "ml_upper": 306.0,
              "auto_lower": 101.0,
              "auto_upper": 306.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 67734.74,
              "warn_upper": 282981.5,
              "source": "computed",
              "ml_lower": 67734.74,
              "ml_upper": 282981.5,
              "auto_lower": 67734.74,
              "auto_upper": 282981.49999999994,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 32259,
            "refseq_count": 127,
            "final_count": 32259,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [
              "Survey respondents flagged uncertainty about the no_of_contigs upper bound \u2014 some high-quality genomes in their dataset are excluded by the current threshold (Nov 2025 feedback survey). Pending follow-up before any revision."
            ],
            "engine": {}
          }
        }
      }
    },
    "Neisseria_perflava": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2500000.0,
              "final_lower": 2100000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2153110.5,
              "ml_upper": 2427741.24,
              "auto_lower": 2153110.505,
              "auto_upper": 2427741.2399999998,
              "refseq_lower": 2284967.26,
              "refseq_upper": 2344220.74
            },
            {
              "metric": "GC_Content",
              "lower": 48.71,
              "upper": 49.31,
              "final_lower": 48.71,
              "final_upper": 49.31,
              "warn_lower": 48.79,
              "warn_upper": 49.31,
              "source": "computed",
              "ml_lower": 48.7158,
              "ml_upper": 49.3079,
              "auto_lower": 48.7158285,
              "auto_upper": 49.307914499999995,
              "refseq_lower": 48.8429395,
              "refseq_upper": 49.0487605
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2400.0,
              "final_lower": 2000.0,
              "final_upper": 2400.0,
              "warn_lower": 2000.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2030.51,
              "ml_upper": 2349.5,
              "auto_lower": 2030.51,
              "auto_upper": 2349.495,
              "refseq_lower": 2199.115,
              "refseq_upper": 2221.885
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.37,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.37020000000001,
              "refseq_upper": 99.40979999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.5,
              "auto_lower": 0.0,
              "auto_upper": 0.41909999999999914,
              "refseq_lower": 0.6044999999999999,
              "refseq_upper": 1.4955
            },
            {
              "metric": "N50",
              "lower": 137000.0,
              "upper": null,
              "final_lower": 137000.0,
              "final_upper": null,
              "warn_lower": 149000.0,
              "warn_upper": 546829.39,
              "source": "computed",
              "ml_lower": 137838.15,
              "ml_upper": 546829.39,
              "auto_lower": 137838.15,
              "auto_upper": 546829.3899999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 70.0,
              "final_lower": null,
              "final_upper": 70.0,
              "warn_lower": 16.0,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 16.0,
              "ml_upper": 68.54,
              "auto_lower": 16.0,
              "auto_upper": 68.535,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 253654.28,
              "warn_upper": 833712.96,
              "source": "computed",
              "ml_lower": 253654.28,
              "ml_upper": 833712.96,
              "auto_lower": 253654.275,
              "auto_upper": 833712.964999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 94,
            "refseq_count": 2,
            "final_count": 94,
            "filtered_out_count": 0,
            "pass_count": 93,
            "warn_count": 6,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2500000.0,
              "final_lower": 2100000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2153110.5,
              "ml_upper": 2427741.24,
              "auto_lower": 2153110.505,
              "auto_upper": 2427741.2399999998,
              "refseq_lower": 2284967.26,
              "refseq_upper": 2344220.74
            },
            {
              "metric": "GC_Content",
              "lower": 48.71,
              "upper": 49.31,
              "final_lower": 48.71,
              "final_upper": 49.31,
              "warn_lower": 48.79,
              "warn_upper": 49.31,
              "source": "computed",
              "ml_lower": 48.7158,
              "ml_upper": 49.3079,
              "auto_lower": 48.7158285,
              "auto_upper": 49.307914499999995,
              "refseq_lower": 48.8429395,
              "refseq_upper": 49.0487605
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2400.0,
              "final_lower": 2000.0,
              "final_upper": 2400.0,
              "warn_lower": 2000.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2030.51,
              "ml_upper": 2349.5,
              "auto_lower": 2030.51,
              "auto_upper": 2349.495,
              "refseq_lower": 2199.115,
              "refseq_upper": 2221.885
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.37,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.37020000000001,
              "refseq_upper": 99.40979999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "pinned",
              "ml_lower": 0.0,
              "ml_upper": 1.5,
              "auto_lower": 0.0,
              "auto_upper": 0.41909999999999914,
              "refseq_lower": 0.6044999999999999,
              "refseq_upper": 1.4955
            },
            {
              "metric": "N50",
              "lower": 137000.0,
              "upper": null,
              "final_lower": 137000.0,
              "final_upper": null,
              "warn_lower": 149000.0,
              "warn_upper": 546829.39,
              "source": "computed",
              "ml_lower": 137838.15,
              "ml_upper": 546829.39,
              "auto_lower": 137838.15,
              "auto_upper": 546829.3899999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 70.0,
              "final_lower": null,
              "final_upper": 70.0,
              "warn_lower": 16.0,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 16.0,
              "ml_upper": 68.54,
              "auto_lower": 16.0,
              "auto_upper": 68.535,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 253654.28,
              "warn_upper": 833712.96,
              "source": "computed",
              "ml_lower": 253654.28,
              "ml_upper": 833712.96,
              "auto_lower": 253654.275,
              "auto_upper": 833712.964999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 94,
            "refseq_count": 2,
            "final_count": 94,
            "filtered_out_count": 0,
            "pass_count": 93,
            "warn_count": 6,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Neisseria_polysaccharea": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2200000.0,
              "final_lower": 1900000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1977394.15,
              "ml_upper": 2186566.55,
              "auto_lower": 1977394.15,
              "auto_upper": 2186566.55,
              "refseq_lower": 2024930.0,
              "refseq_upper": 2024930.0
            },
            {
              "metric": "GC_Content",
              "lower": 51.52,
              "upper": 52.35,
              "final_lower": 51.52,
              "final_upper": 52.35,
              "warn_lower": 51.53,
              "warn_upper": 52.29,
              "source": "computed",
              "ml_lower": 51.5214,
              "ml_upper": 52.3456,
              "auto_lower": 51.52144,
              "auto_upper": 52.34561,
              "refseq_lower": 52.1317,
              "refseq_upper": 52.1317
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2200.0,
              "final_lower": 1800.0,
              "final_upper": 2200.0,
              "warn_lower": 1800.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1845.62,
              "ml_upper": 2114.7,
              "auto_lower": 1845.625,
              "auto_upper": 2114.7,
              "refseq_lower": 2063.0,
              "refseq_upper": 2063.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.06,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 98.06,
              "refseq_upper": 98.06
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.2,
              "auto_lower": 0.0,
              "auto_upper": 0.15,
              "refseq_lower": 0.2,
              "refseq_upper": 0.2
            },
            {
              "metric": "N50",
              "lower": 67000.0,
              "upper": null,
              "final_lower": 67000.0,
              "final_upper": null,
              "warn_lower": 78000.0,
              "warn_upper": 305429.87,
              "source": "computed",
              "ml_lower": 67888.88,
              "ml_upper": 305429.87,
              "auto_lower": 67888.875,
              "auto_upper": 305429.8749999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 20.52,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 20.52,
              "ml_upper": 84.85,
              "auto_lower": 20.525,
              "auto_upper": 84.84999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 151296.88,
              "warn_upper": 613953.5,
              "source": "computed",
              "ml_lower": 151296.88,
              "ml_upper": 613953.5,
              "auto_lower": 151296.875,
              "auto_upper": 613953.4999999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 106,
            "refseq_count": 1,
            "final_count": 106,
            "filtered_out_count": 0,
            "pass_count": 101,
            "warn_count": 8,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        },
        "qualibact-v1.1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2200000.0,
              "final_lower": 1900000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1977394.15,
              "ml_upper": 2186566.55,
              "auto_lower": 1977394.15,
              "auto_upper": 2186566.55,
              "refseq_lower": 2024930.0,
              "refseq_upper": 2024930.0
            },
            {
              "metric": "GC_Content",
              "lower": 51.52,
              "upper": 52.35,
              "final_lower": 51.52,
              "final_upper": 52.35,
              "warn_lower": 51.53,
              "warn_upper": 52.29,
              "source": "computed",
              "ml_lower": 51.5214,
              "ml_upper": 52.3456,
              "auto_lower": 51.52144,
              "auto_upper": 52.34561,
              "refseq_lower": 52.1317,
              "refseq_upper": 52.1317
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2200.0,
              "final_lower": 1800.0,
              "final_upper": 2200.0,
              "warn_lower": 1800.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1845.62,
              "ml_upper": 2114.7,
              "auto_lower": 1845.625,
              "auto_upper": 2114.7,
              "refseq_lower": 2063.0,
              "refseq_upper": 2063.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "pinned",
              "ml_lower": 98.06,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 98.06,
              "refseq_upper": 98.06
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "pinned",
              "ml_lower": 0.0,
              "ml_upper": 0.2,
              "auto_lower": 0.0,
              "auto_upper": 0.15,
              "refseq_lower": 0.2,
              "refseq_upper": 0.2
            },
            {
              "metric": "N50",
              "lower": 67000.0,
              "upper": null,
              "final_lower": 67000.0,
              "final_upper": null,
              "warn_lower": 78000.0,
              "warn_upper": 305429.87,
              "source": "computed",
              "ml_lower": 67888.88,
              "ml_upper": 305429.87,
              "auto_lower": 67888.875,
              "auto_upper": 305429.8749999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 20.52,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 20.52,
              "ml_upper": 84.85,
              "auto_lower": 20.525,
              "auto_upper": 84.84999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 151296.88,
              "warn_upper": 613953.5,
              "source": "computed",
              "ml_lower": 151296.88,
              "ml_upper": 613953.5,
              "auto_lower": 151296.875,
              "auto_upper": 613953.4999999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 106,
            "refseq_count": 1,
            "final_count": 106,
            "filtered_out_count": 0,
            "pass_count": 101,
            "warn_count": 8,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Oenococcus_oeni": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2000000.0,
              "final_lower": 1700000.0,
              "final_upper": 2000000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 1900000.0,
              "source": "computed",
              "ml_lower": 1740923.65,
              "ml_upper": 1989703.0,
              "auto_lower": 1740923.65,
              "auto_upper": 1888579.1,
              "refseq_lower": 1782369.28,
              "refseq_upper": 1985797.84
            },
            {
              "metric": "GC_Content",
              "lower": 37.71,
              "upper": 38.08,
              "final_lower": 37.71,
              "final_upper": 38.08,
              "warn_lower": 37.71,
              "warn_upper": 38.06,
              "source": "computed",
              "ml_lower": 37.7103,
              "ml_upper": 38.0747,
              "auto_lower": 37.71032,
              "auto_upper": 38.060205,
              "refseq_lower": 37.7336,
              "refseq_upper": 38.06858
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2100.0,
              "final_lower": 1700.0,
              "final_upper": 2100.0,
              "warn_lower": 1800.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1789.55,
              "ml_upper": 2070.0,
              "auto_lower": 1789.55,
              "auto_upper": 1979.75,
              "refseq_lower": 1852.08,
              "refseq_upper": 2066.12
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 96.71,
              "ml_upper": 99.99,
              "auto_lower": 99.3965,
              "auto_upper": 99.99,
              "refseq_lower": 96.7136,
              "refseq_upper": 99.0188
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.26,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.26,
              "ml_upper": 3.39,
              "auto_lower": 0.261,
              "auto_upper": 2.5500000000000025,
              "refseq_lower": 0.89,
              "refseq_upper": 3.39
            },
            {
              "metric": "N50",
              "lower": 86000.0,
              "upper": null,
              "final_lower": 86000.0,
              "final_upper": null,
              "warn_lower": 93000.0,
              "warn_upper": 241946.7,
              "source": "computed",
              "ml_lower": 86448.85,
              "ml_upper": 241946.7,
              "auto_lower": 86448.85,
              "auto_upper": 241946.7,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 70.0,
              "final_lower": null,
              "final_upper": 70.0,
              "warn_lower": 23.1,
              "warn_upper": 60.0,
              "source": "computed",
              "ml_lower": 23.1,
              "ml_upper": 60.25,
              "auto_lower": 23.1,
              "auto_upper": 60.250000000000014,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 220941.0,
              "warn_upper": 489741.5,
              "source": "computed",
              "ml_lower": 220941.0,
              "ml_upper": 489741.5,
              "auto_lower": 220941.0,
              "auto_upper": 489741.5000000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 111,
            "refseq_count": 9,
            "final_count": 111,
            "filtered_out_count": 0,
            "pass_count": 105,
            "warn_count": 11,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Ornithobacterium_rhinotracheale": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 2500000.0,
              "final_lower": 2200000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2265171.46,
              "ml_upper": 2418866.0,
              "auto_lower": 2265171.46,
              "auto_upper": 2403961.14,
              "refseq_lower": 2397840.54,
              "refseq_upper": 2418688.58
            },
            {
              "metric": "GC_Content",
              "lower": 37.21,
              "upper": 37.79,
              "final_lower": 37.21,
              "final_upper": 37.79,
              "warn_lower": 37.25,
              "warn_upper": 37.73,
              "source": "computed",
              "ml_lower": 37.2176,
              "ml_upper": 37.7883,
              "auto_lower": 37.224298,
              "auto_upper": 37.788308,
              "refseq_lower": 37.221925999999996,
              "refseq_upper": 37.456084
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 2400.0,
              "final_lower": 2100.0,
              "final_upper": 2400.0,
              "warn_lower": 2100.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2160.14,
              "ml_upper": 2384.66,
              "auto_lower": 2160.14,
              "auto_upper": 2384.66,
              "refseq_lower": 2311.1,
              "refseq_upper": 2341.72
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.97,
              "source": "computed",
              "ml_lower": 95.2,
              "ml_upper": 99.97,
              "auto_lower": 99.8402,
              "auto_upper": 99.97,
              "refseq_lower": 95.2012,
              "refseq_upper": 96.28160000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.72,
              "auto_lower": 0.01,
              "auto_upper": 0.41879999999999995,
              "refseq_lower": 0.48279999999999995,
              "refseq_upper": 1.7094
            },
            {
              "metric": "N50",
              "lower": 29000.0,
              "upper": null,
              "final_lower": 29000.0,
              "final_upper": null,
              "warn_lower": 33000.0,
              "warn_upper": 151866.8,
              "source": "computed",
              "ml_lower": 29598.06,
              "ml_upper": 151866.8,
              "auto_lower": 29598.06,
              "auto_upper": 151866.8,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 61.78,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 61.78,
              "ml_upper": 204.84,
              "auto_lower": 61.78,
              "auto_upper": 204.83999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 106526.5,
              "warn_upper": 422718.66,
              "source": "computed",
              "ml_lower": 106526.5,
              "ml_upper": 422718.66,
              "auto_lower": 106526.5,
              "auto_upper": 422718.66,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 157,
            "refseq_count": 5,
            "final_count": 157,
            "filtered_out_count": 0,
            "pass_count": 148,
            "warn_count": 7,
            "fail_count": 22
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Paenibacillus_larvae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4800000.0,
              "final_lower": 3600000.0,
              "final_upper": 4800000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 4400000.0,
              "source": "computed",
              "ml_lower": 3682655.14,
              "ml_upper": 4794868.0,
              "auto_lower": 3682655.14,
              "auto_upper": 4438352.15,
              "refseq_lower": 4054665.045,
              "refseq_upper": 4792689.23
            },
            {
              "metric": "GC_Content",
              "lower": 43.77,
              "upper": 45.01,
              "final_lower": 43.77,
              "final_upper": 45.01,
              "warn_lower": 43.97,
              "warn_upper": 44.62,
              "source": "computed",
              "ml_lower": 43.7793,
              "ml_upper": 45.0059,
              "auto_lower": 43.948910000000005,
              "auto_upper": 44.802291,
              "refseq_lower": 43.791653,
              "refseq_upper": 45.003567999999994
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3800.0,
              "upper": 5300.0,
              "final_lower": 3800.0,
              "final_upper": 5300.0,
              "warn_lower": 3800.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 3803.0,
              "ml_upper": 5272.0,
              "auto_lower": 3803.0,
              "auto_upper": 4905.79,
              "refseq_lower": 4069.1,
              "refseq_upper": 5261.385
            },
            {
              "metric": "Completeness_Specific",
              "lower": 86.0,
              "upper": null,
              "final_lower": 86.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 86.23,
              "ml_upper": 100.0,
              "auto_lower": 99.92,
              "auto_upper": 100.0,
              "refseq_lower": 86.3169,
              "refseq_upper": 99.72
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.14,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.14,
              "ml_upper": 3.06,
              "auto_lower": 0.6163,
              "auto_upper": 3.06,
              "refseq_lower": 0.14,
              "refseq_upper": 1.3649999999999998
            },
            {
              "metric": "N50",
              "lower": 21000.0,
              "upper": null,
              "final_lower": 21000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 84597.0,
              "source": "computed",
              "ml_lower": 21844.04,
              "ml_upper": 84597.0,
              "auto_lower": 21844.04,
              "auto_upper": 84597.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 790.0,
              "final_lower": null,
              "final_upper": 790.0,
              "warn_lower": 179.0,
              "warn_upper": 460.0,
              "source": "computed",
              "ml_lower": 179.0,
              "ml_upper": 786.32,
              "auto_lower": 179.0,
              "auto_upper": 786.3199999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 96946.31,
              "warn_upper": 239408.04,
              "source": "computed",
              "ml_lower": 96946.31,
              "ml_upper": 239408.04,
              "auto_lower": 96946.31,
              "auto_upper": 239408.03999999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1043,
            "refseq_count": 12,
            "final_count": 1043,
            "filtered_out_count": 0,
            "pass_count": 937,
            "warn_count": 127,
            "fail_count": 91
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Parabacteroides_distasonis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 5700000.0,
              "final_lower": 4700000.0,
              "final_upper": 5700000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5600000.0,
              "source": "computed",
              "ml_lower": 4734420.53,
              "ml_upper": 5602606.84,
              "auto_lower": 4734420.525,
              "auto_upper": 5602606.84,
              "refseq_lower": 4779761.52,
              "refseq_upper": 5552857.99
            },
            {
              "metric": "GC_Content",
              "lower": 44.77,
              "upper": 45.58,
              "final_lower": 44.77,
              "final_upper": 45.58,
              "warn_lower": 44.83,
              "warn_upper": 45.36,
              "source": "computed",
              "ml_lower": 44.774,
              "ml_upper": 45.5766,
              "auto_lower": 44.774004999999995,
              "auto_upper": 45.4241065,
              "refseq_lower": 44.794721,
              "refseq_upper": 45.548547
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 5000.0,
              "final_lower": 3900.0,
              "final_upper": 5000.0,
              "warn_lower": 4000.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 3961.0,
              "ml_upper": 4990.07,
              "auto_lower": 3988.705,
              "auto_upper": 4990.0650000000005,
              "refseq_lower": 3969.505,
              "refseq_upper": 4758.915
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.55,
              "ml_upper": 100.0,
              "auto_lower": 99.90705,
              "auto_upper": 100.0,
              "refseq_lower": 91.68635,
              "refseq_upper": 99.15
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.22,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.22,
              "ml_upper": 3.84,
              "auto_lower": 0.22,
              "auto_upper": 3.841800000000003,
              "refseq_lower": 0.27,
              "refseq_upper": 3.37
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 69000.0,
              "warn_upper": 576622.66,
              "source": "computed",
              "ml_lower": 33001.71,
              "ml_upper": 576622.66,
              "auto_lower": 33001.715,
              "auto_upper": 576622.6550000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 340.0,
              "final_lower": null,
              "final_upper": 340.0,
              "warn_lower": 35.0,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 35.0,
              "ml_upper": 339.48,
              "auto_lower": 35.0,
              "auto_upper": 339.47500000000036,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 126268.44,
              "warn_upper": 1326847.55,
              "source": "computed",
              "ml_lower": 126268.44,
              "ml_upper": 1326847.55,
              "auto_lower": 126268.435,
              "auto_upper": 1326847.5450000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1942,
            "refseq_count": 28,
            "final_count": 1942,
            "filtered_out_count": 0,
            "pass_count": 1754,
            "warn_count": 194,
            "fail_count": 150
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Parabacteroides_goldsteinii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6300000.0,
              "upper": 7600000.0,
              "final_lower": 6300000.0,
              "final_upper": 7600000.0,
              "warn_lower": 6300000.0,
              "warn_upper": 7600000.0,
              "source": "computed",
              "ml_lower": 6364138.3,
              "ml_upper": 7539035.5,
              "auto_lower": 6364138.3,
              "auto_upper": 7539035.5,
              "refseq_lower": 6652973.21,
              "refseq_upper": 7051015.28
            },
            {
              "metric": "GC_Content",
              "lower": 43.19,
              "upper": 43.79,
              "final_lower": 43.19,
              "final_upper": 43.79,
              "warn_lower": 43.19,
              "warn_upper": 43.72,
              "source": "computed",
              "ml_lower": 43.194,
              "ml_upper": 43.7877,
              "auto_lower": 43.193976,
              "auto_upper": 43.78766,
              "refseq_lower": 43.4548585,
              "refseq_upper": 43.6236315
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5000.0,
              "upper": 6300.0,
              "final_lower": 5000.0,
              "final_upper": 6300.0,
              "warn_lower": 5000.0,
              "warn_upper": 6200.0,
              "source": "computed",
              "ml_lower": 5024.74,
              "ml_upper": 6250.9,
              "auto_lower": 5024.74,
              "auto_upper": 6250.9,
              "refseq_lower": 5301.465,
              "refseq_upper": 5714.595
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.46,
              "ml_upper": 100.0,
              "auto_lower": 99.8354,
              "auto_upper": 100.0,
              "refseq_lower": 96.4831,
              "refseq_upper": 98.07
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.59,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.59,
              "ml_upper": 4.42,
              "auto_lower": 0.5916,
              "auto_upper": 2.7759999999999994,
              "refseq_lower": 3.2883999999999998,
              "refseq_upper": 4.41505
            },
            {
              "metric": "N50",
              "lower": 35000.0,
              "upper": null,
              "final_lower": 35000.0,
              "final_upper": null,
              "warn_lower": 70000.0,
              "warn_upper": 378638.38,
              "source": "computed",
              "ml_lower": 35573.7,
              "ml_upper": 378638.38,
              "auto_lower": 35573.7,
              "auto_upper": 378638.37999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 610.0,
              "final_lower": null,
              "final_upper": 610.0,
              "warn_lower": 61.1,
              "warn_upper": 400.0,
              "source": "computed",
              "ml_lower": 61.1,
              "ml_upper": 609.86,
              "auto_lower": 61.1,
              "auto_upper": 609.8599999999982,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 141591.74,
              "warn_upper": 875543.74,
              "source": "computed",
              "ml_lower": 141591.74,
              "ml_upper": 875543.74,
              "auto_lower": 141591.74,
              "auto_upper": 875543.7399999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 109,
            "refseq_count": 4,
            "final_count": 109,
            "filtered_out_count": 0,
            "pass_count": 100,
            "warn_count": 12,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Parabacteroides_merdae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 5300000.0,
              "final_lower": 4200000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4200000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4267789.72,
              "ml_upper": 5201700.48,
              "auto_lower": 4267789.72,
              "auto_upper": 5201700.48,
              "refseq_lower": 4375824.705,
              "refseq_upper": 4795914.89
            },
            {
              "metric": "GC_Content",
              "lower": 44.91,
              "upper": 45.81,
              "final_lower": 44.91,
              "final_upper": 45.81,
              "warn_lower": 45.02,
              "warn_upper": 45.7,
              "source": "computed",
              "ml_lower": 44.9151,
              "ml_upper": 45.8029,
              "auto_lower": 44.915108000000004,
              "auto_upper": 45.80288,
              "refseq_lower": 45.3179225,
              "refseq_upper": 45.4321195
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3500.0,
              "upper": 4700.0,
              "final_lower": 3500.0,
              "final_upper": 4700.0,
              "warn_lower": 3500.0,
              "warn_upper": 4500.0,
              "source": "computed",
              "ml_lower": 3504.0,
              "ml_upper": 4632.76,
              "auto_lower": 3504.0,
              "auto_upper": 4632.76,
              "refseq_lower": 3570.015,
              "refseq_upper": 4022.19
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.62,
              "ml_upper": 100.0,
              "auto_lower": 99.94,
              "auto_upper": 100.0,
              "refseq_lower": 94.6335,
              "refseq_upper": 97.84
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.11,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.11,
              "ml_upper": 6.64,
              "auto_lower": 0.11,
              "auto_upper": 4.078800000000002,
              "refseq_lower": 3.24,
              "refseq_upper": 6.6187
            },
            {
              "metric": "N50",
              "lower": 42000.0,
              "upper": null,
              "final_lower": 42000.0,
              "final_upper": null,
              "warn_lower": 77000.0,
              "warn_upper": 576946.0,
              "source": "computed",
              "ml_lower": 42904.24,
              "ml_upper": 576946.0,
              "auto_lower": 42904.24,
              "auto_upper": 576946.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 320.0,
              "final_lower": null,
              "final_upper": 320.0,
              "warn_lower": 25.16,
              "warn_upper": 220.0,
              "source": "computed",
              "ml_lower": 25.16,
              "ml_upper": 311.56,
              "auto_lower": 25.16,
              "auto_upper": 311.5600000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 161380.8,
              "warn_upper": 1138056.2,
              "source": "computed",
              "ml_lower": 161380.8,
              "ml_upper": 1138056.2,
              "auto_lower": 161380.8,
              "auto_upper": 1138056.2000000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 417,
            "refseq_count": 4,
            "final_count": 417,
            "filtered_out_count": 0,
            "pass_count": 368,
            "warn_count": 50,
            "fail_count": 28
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pasteurella_multocida": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2800000.0,
              "final_lower": 2100000.0,
              "final_upper": 2800000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2126408.0,
              "ml_upper": 2783224.0,
              "auto_lower": 2194845.54,
              "auto_upper": 2477770.8199999994,
              "refseq_lower": 2169657.66,
              "refseq_upper": 2624767.66
            },
            {
              "metric": "GC_Content",
              "lower": 40.08,
              "upper": 40.87,
              "final_lower": 40.08,
              "final_upper": 40.87,
              "warn_lower": 40.17,
              "warn_upper": 40.48,
              "source": "computed",
              "ml_lower": 40.0858,
              "ml_upper": 40.8671,
              "auto_lower": 40.1305975,
              "auto_upper": 40.5274965,
              "refseq_lower": 40.1564545,
              "refseq_upper": 40.754269
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2900.0,
              "final_lower": 2000.0,
              "final_upper": 2900.0,
              "warn_lower": 2000.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2014.26,
              "ml_upper": 2877.0,
              "auto_lower": 2014.265,
              "auto_upper": 2439.229999999998,
              "refseq_lower": 2048.015,
              "refseq_upper": 2650.895
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.1,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 90.41225,
              "refseq_upper": 99.21
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 2.06,
              "auto_lower": 0.07265,
              "auto_upper": 0.32734999999999903,
              "refseq_lower": 0.05,
              "refseq_upper": 1.8051000000000006
            },
            {
              "metric": "N50",
              "lower": 26000.0,
              "upper": null,
              "final_lower": 26000.0,
              "final_upper": null,
              "warn_lower": 38000.0,
              "warn_upper": 579228.71,
              "source": "computed",
              "ml_lower": 26027.0,
              "ml_upper": 579228.71,
              "auto_lower": 26027.005,
              "auto_upper": 579228.7099999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 180.0,
              "final_lower": null,
              "final_upper": 180.0,
              "warn_lower": 16.0,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 16.0,
              "ml_upper": 170.47,
              "auto_lower": 16.0,
              "auto_upper": 170.4699999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 88404.86,
              "warn_upper": 770331.36,
              "source": "computed",
              "ml_lower": 88404.86,
              "ml_upper": 770331.36,
              "auto_lower": 88404.855,
              "auto_upper": 770331.3599999996,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1054,
            "refseq_count": 208,
            "final_count": 1054,
            "filtered_out_count": 0,
            "pass_count": 971,
            "warn_count": 122,
            "fail_count": 46
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pectobacterium_brasiliense": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5300000.0,
              "final_lower": 4600000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5200000.0,
              "source": "computed",
              "ml_lower": 4646903.25,
              "ml_upper": 5297051.0,
              "auto_lower": 4646903.25,
              "auto_upper": 5108429.73,
              "refseq_lower": 4705934.6,
              "refseq_upper": 5275461.125
            },
            {
              "metric": "GC_Content",
              "lower": 51.14,
              "upper": 52.24,
              "final_lower": 51.14,
              "final_upper": 52.24,
              "warn_lower": 51.77,
              "warn_upper": 52.23,
              "source": "computed",
              "ml_lower": 51.1403,
              "ml_upper": 52.2352,
              "auto_lower": 51.140305,
              "auto_upper": 52.232818,
              "refseq_lower": 51.7007975,
              "refseq_upper": 52.2279775
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 4800.0,
              "final_lower": 4100.0,
              "final_upper": 4800.0,
              "warn_lower": 4100.0,
              "warn_upper": 4600.0,
              "source": "computed",
              "ml_lower": 4160.81,
              "ml_upper": 4760.0,
              "auto_lower": 4160.81,
              "auto_upper": 4536.9,
              "refseq_lower": 4191.555,
              "refseq_upper": 4734.485
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.24034999999999,
              "refseq_upper": 99.4165
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.13,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 1.93,
              "auto_lower": 0.13,
              "auto_upper": 0.74,
              "refseq_lower": 0.19485,
              "refseq_upper": 1.9124499999999998
            },
            {
              "metric": "N50",
              "lower": 131000.0,
              "upper": null,
              "final_lower": 131000.0,
              "final_upper": null,
              "warn_lower": 141000.0,
              "warn_upper": 1055264.66,
              "source": "computed",
              "ml_lower": 131382.89,
              "ml_upper": 1055264.66,
              "auto_lower": 131382.89,
              "auto_upper": 1055264.66,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 32.23,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 32.23,
              "ml_upper": 128.31,
              "auto_lower": 32.23,
              "auto_upper": 128.31000000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 336689.88,
              "warn_upper": 1561933.06,
              "source": "computed",
              "ml_lower": 336689.88,
              "ml_upper": 1561933.06,
              "auto_lower": 336689.88,
              "auto_upper": 1561933.06,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 83,
            "refseq_count": 28,
            "final_count": 83,
            "filtered_out_count": 0,
            "pass_count": 86,
            "warn_count": 7,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pediococcus_acidilactici": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2300000.0,
              "final_lower": 1700000.0,
              "final_upper": 2300000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2100000.0,
              "source": "computed",
              "ml_lower": 1779925.0,
              "ml_upper": 2228155.0,
              "auto_lower": 1807077.755,
              "auto_upper": 2095298.445,
              "refseq_lower": 1803673.24,
              "refseq_upper": 2226018.04
            },
            {
              "metric": "GC_Content",
              "lower": 41.85,
              "upper": 42.6,
              "final_lower": 41.85,
              "final_upper": 42.6,
              "warn_lower": 41.95,
              "warn_upper": 42.37,
              "source": "computed",
              "ml_lower": 41.8533,
              "ml_upper": 42.5998,
              "auto_lower": 41.946841,
              "auto_upper": 42.3715865,
              "refseq_lower": 41.885788999999995,
              "refseq_upper": 42.5489995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2300.0,
              "final_lower": 1700.0,
              "final_upper": 2300.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1741.36,
              "ml_upper": 2241.0,
              "auto_lower": 1741.365,
              "auto_upper": 2031.295,
              "refseq_lower": 1770.115,
              "refseq_upper": 2238.88
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.29,
              "ml_upper": 100.0,
              "auto_lower": 99.78,
              "auto_upper": 100.0,
              "refseq_lower": 90.84385,
              "refseq_upper": 98.0082
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.35,
              "auto_lower": 0.0,
              "auto_upper": 1.38,
              "refseq_lower": 0.18,
              "refseq_upper": 5.586799999999998
            },
            {
              "metric": "N50",
              "lower": 125000.0,
              "upper": null,
              "final_lower": 125000.0,
              "final_upper": null,
              "warn_lower": 140000.0,
              "warn_upper": 496610.0,
              "source": "computed",
              "ml_lower": 125956.28,
              "ml_upper": 496610.0,
              "auto_lower": 125956.275,
              "auto_upper": 496610.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 60.0,
              "final_lower": null,
              "final_upper": 60.0,
              "warn_lower": 11.41,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 11.41,
              "ml_upper": 57.59,
              "auto_lower": 11.41,
              "auto_upper": 57.589999999999975,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 292928.22,
              "warn_upper": 678609.0,
              "source": "computed",
              "ml_lower": 292928.22,
              "ml_upper": 678609.0,
              "auto_lower": 292928.215,
              "auto_upper": 678609.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 142,
            "refseq_count": 54,
            "final_count": 142,
            "filtered_out_count": 0,
            "pass_count": 129,
            "warn_count": 13,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pediococcus_pentosaceus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1600000.0,
              "upper": 2100000.0,
              "final_lower": 1600000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1688270.0,
              "ml_upper": 2059009.0,
              "auto_lower": 1708652.75,
              "auto_upper": 1953491.375,
              "refseq_lower": 1691158.46,
              "refseq_upper": 2042848.9599999997
            },
            {
              "metric": "GC_Content",
              "lower": 37.0,
              "upper": 37.53,
              "final_lower": 37.0,
              "final_upper": 37.53,
              "warn_lower": 37.03,
              "warn_upper": 37.31,
              "source": "computed",
              "ml_lower": 37.004,
              "ml_upper": 37.5254,
              "auto_lower": 37.0040025,
              "auto_upper": 37.3171745,
              "refseq_lower": 37.140075,
              "refseq_upper": 37.509361999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1600.0,
              "upper": 2200.0,
              "final_lower": 1600.0,
              "final_upper": 2200.0,
              "warn_lower": 1700.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1671.17,
              "ml_upper": 2111.0,
              "auto_lower": 1671.17,
              "auto_upper": 1998.2450000000001,
              "refseq_lower": 1701.78,
              "refseq_upper": 2099.66
            },
            {
              "metric": "Completeness_Specific",
              "lower": 84.0,
              "upper": null,
              "final_lower": 84.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 84.97,
              "ml_upper": 100.0,
              "auto_lower": 99.99585,
              "auto_upper": 100.0,
              "refseq_lower": 85.1239,
              "refseq_upper": 98.3874
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.09,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.09,
              "ml_upper": 8.79,
              "auto_lower": 0.09,
              "auto_upper": 0.42545000000000144,
              "refseq_lower": 0.7709,
              "refseq_upper": 8.633399999999998
            },
            {
              "metric": "N50",
              "lower": 209000.0,
              "upper": null,
              "final_lower": 209000.0,
              "final_upper": null,
              "warn_lower": 233000.0,
              "warn_upper": 468256.0,
              "source": "computed",
              "ml_lower": 209985.96,
              "ml_upper": 468256.0,
              "auto_lower": 209985.955,
              "auto_upper": 468256.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 50.0,
              "final_lower": null,
              "final_upper": 50.0,
              "warn_lower": 11.0,
              "warn_upper": 40.0,
              "source": "computed",
              "ml_lower": 11.0,
              "ml_upper": 47.98,
              "auto_lower": 11.0,
              "auto_upper": 47.980000000000075,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 349537.96,
              "warn_upper": 540731.24,
              "source": "computed",
              "ml_lower": 349537.96,
              "ml_upper": 540731.24,
              "auto_lower": 349537.96,
              "auto_upper": 540731.245,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 118,
            "refseq_count": 55,
            "final_count": 118,
            "filtered_out_count": 0,
            "pass_count": 112,
            "warn_count": 17,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Phocaeicola_dorei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6100000.0,
              "final_lower": 4900000.0,
              "final_upper": 6100000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5900000.0,
              "source": "computed",
              "ml_lower": 4908082.26,
              "ml_upper": 6040287.35,
              "auto_lower": 4908082.26,
              "auto_upper": 6040287.349999999,
              "refseq_lower": 5316419.615,
              "refseq_upper": 5801132.555
            },
            {
              "metric": "GC_Content",
              "lower": 41.42,
              "upper": 42.36,
              "final_lower": 41.42,
              "final_upper": 42.36,
              "warn_lower": 41.5,
              "warn_upper": 42.32,
              "source": "computed",
              "ml_lower": 41.4275,
              "ml_upper": 42.3521,
              "auto_lower": 41.427471,
              "auto_upper": 42.3521,
              "refseq_lower": 41.590848,
              "refseq_upper": 42.158164500000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 5300.0,
              "final_lower": 3900.0,
              "final_upper": 5300.0,
              "warn_lower": 4000.0,
              "warn_upper": 5200.0,
              "source": "computed",
              "ml_lower": 3926.0,
              "ml_upper": 5272.41,
              "auto_lower": 3926.0,
              "auto_upper": 5272.409999999997,
              "refseq_lower": 4349.885,
              "refseq_upper": 4856.875
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.76,
              "ml_upper": 100.0,
              "auto_lower": 99.9753,
              "auto_upper": 100.0,
              "refseq_lower": 98.79195,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.75,
              "auto_lower": 0.0,
              "auto_upper": 4.750299999999985,
              "refseq_lower": 0.35,
              "refseq_upper": 0.35
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 58000.0,
              "warn_upper": 442114.0,
              "source": "computed",
              "ml_lower": 33429.93,
              "ml_upper": 442114.0,
              "auto_lower": 33429.93,
              "auto_upper": 442114.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 410.0,
              "final_lower": null,
              "final_upper": 410.0,
              "warn_lower": 39.53,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 39.53,
              "ml_upper": 404.63,
              "auto_lower": 39.53,
              "auto_upper": 404.62999999999914,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 145122.64,
              "warn_upper": 1285259.49,
              "source": "computed",
              "ml_lower": 145122.64,
              "ml_upper": 1285259.49,
              "auto_lower": 145122.64,
              "auto_upper": 1285259.489999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 307,
            "refseq_count": 10,
            "final_count": 307,
            "filtered_out_count": 0,
            "pass_count": 271,
            "warn_count": 32,
            "fail_count": 32
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Phocaeicola_vulgatus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4500000.0,
              "upper": 5800000.0,
              "final_lower": 4500000.0,
              "final_upper": 5800000.0,
              "warn_lower": 4600000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 4570898.59,
              "ml_upper": 5783567.75,
              "auto_lower": 4570898.59,
              "auto_upper": 5783567.75,
              "refseq_lower": 4923185.9,
              "refseq_upper": 5752626.8
            },
            {
              "metric": "GC_Content",
              "lower": 41.81,
              "upper": 42.87,
              "final_lower": 41.81,
              "final_upper": 42.87,
              "warn_lower": 41.89,
              "warn_upper": 42.77,
              "source": "computed",
              "ml_lower": 41.8142,
              "ml_upper": 42.8619,
              "auto_lower": 41.814237,
              "auto_upper": 42.861887,
              "refseq_lower": 42.2015,
              "refseq_upper": 42.760694
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3800.0,
              "upper": 5400.0,
              "final_lower": 3800.0,
              "final_upper": 5400.0,
              "warn_lower": 3800.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 3805.84,
              "ml_upper": 5315.58,
              "auto_lower": 3805.84,
              "auto_upper": 5315.58,
              "refseq_lower": 4126.34,
              "refseq_upper": 5002.5599999999995
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.1,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.15339999999999,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.19,
              "auto_lower": 0.0,
              "auto_upper": 2.19,
              "refseq_lower": 0.1215,
              "refseq_upper": 1.06
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 46000.0,
              "warn_upper": 223980.74,
              "source": "computed",
              "ml_lower": 31031.57,
              "ml_upper": 223980.74,
              "auto_lower": 31031.570000000003,
              "auto_upper": 223980.73999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 590.0,
              "final_lower": null,
              "final_upper": 590.0,
              "warn_lower": 78.0,
              "warn_upper": 440.0,
              "source": "computed",
              "ml_lower": 78.0,
              "ml_upper": 580.75,
              "auto_lower": 78.0,
              "auto_upper": 580.7499999999987,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 109291.29,
              "warn_upper": 635175.0,
              "source": "computed",
              "ml_lower": 109291.29,
              "ml_upper": 635175.0,
              "auto_lower": 109291.29000000001,
              "auto_upper": 635175.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 715,
            "refseq_count": 13,
            "final_count": 715,
            "filtered_out_count": 0,
            "pass_count": 637,
            "warn_count": 67,
            "fail_count": 54
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Priestia_megaterium": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5000000.0,
              "upper": 6900000.0,
              "final_lower": 5000000.0,
              "final_upper": 6900000.0,
              "warn_lower": 5200000.0,
              "warn_upper": 6100000.0,
              "source": "computed",
              "ml_lower": 5036631.0,
              "ml_upper": 6872701.0,
              "auto_lower": 5053487.63,
              "auto_upper": 6136796.630000001,
              "refseq_lower": 5053062.35,
              "refseq_upper": 6676999.550000002
            },
            {
              "metric": "GC_Content",
              "lower": 36.86,
              "upper": 38.34,
              "final_lower": 36.86,
              "final_upper": 38.34,
              "warn_lower": 37.4,
              "warn_upper": 37.96,
              "source": "computed",
              "ml_lower": 36.8662,
              "ml_upper": 38.3321,
              "auto_lower": 37.37595,
              "auto_upper": 38.103471,
              "refseq_lower": 37.1220925,
              "refseq_upper": 38.311105
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5100.0,
              "upper": 7300.0,
              "final_lower": 5100.0,
              "final_upper": 7300.0,
              "warn_lower": 5200.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 5173.57,
              "ml_upper": 7227.0,
              "auto_lower": 5173.57,
              "auto_upper": 6307.74,
              "refseq_lower": 5289.425,
              "refseq_upper": 7030.225000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.03,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 92.62925,
              "refseq_upper": 97.979
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 13.0,
              "final_lower": null,
              "final_upper": 13.0,
              "warn_lower": 0.12,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.12,
              "ml_upper": 12.44,
              "auto_lower": 0.12,
              "auto_upper": 4.571100000000008,
              "refseq_lower": 0.18,
              "refseq_upper": 10.506250000000012
            },
            {
              "metric": "N50",
              "lower": 182000.0,
              "upper": null,
              "final_lower": 182000.0,
              "final_upper": null,
              "warn_lower": 292000.0,
              "warn_upper": 2127714.76,
              "source": "computed",
              "ml_lower": 182791.05,
              "ml_upper": 2127714.76,
              "auto_lower": 182791.05,
              "auto_upper": 2127714.7600000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 33.02,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 33.02,
              "ml_upper": 197.95,
              "auto_lower": 33.02,
              "auto_upper": 197.95000000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 534852.41,
              "warn_upper": 2890236.45,
              "source": "computed",
              "ml_lower": 534852.41,
              "ml_upper": 2890236.45,
              "auto_lower": 534852.41,
              "auto_upper": 2890236.450000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 203,
            "refseq_count": 86,
            "final_count": 203,
            "filtered_out_count": 0,
            "pass_count": 183,
            "warn_count": 32,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Proteus_mirabilis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3700000.0,
              "upper": 4600000.0,
              "final_lower": 3700000.0,
              "final_upper": 4600000.0,
              "warn_lower": 3700000.0,
              "warn_upper": 4300000.0,
              "source": "computed",
              "ml_lower": 3735018.42,
              "ml_upper": 4587183.0,
              "auto_lower": 3735018.42,
              "auto_upper": 4321252.970000001,
              "refseq_lower": 3797570.26,
              "refseq_upper": 4578874.92
            },
            {
              "metric": "GC_Content",
              "lower": 38.38,
              "upper": 39.74,
              "final_lower": 38.38,
              "final_upper": 39.74,
              "warn_lower": 38.44,
              "warn_upper": 39.26,
              "source": "computed",
              "ml_lower": 38.3854,
              "ml_upper": 39.7321,
              "auto_lower": 38.385386000000004,
              "auto_upper": 39.436138,
              "refseq_lower": 38.545906,
              "refseq_upper": 39.728125999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3300.0,
              "upper": 4500.0,
              "final_lower": 3300.0,
              "final_upper": 4500.0,
              "warn_lower": 3300.0,
              "warn_upper": 4100.0,
              "source": "computed",
              "ml_lower": 3314.22,
              "ml_upper": 4427.0,
              "auto_lower": 3314.22,
              "auto_upper": 4076.26,
              "refseq_lower": 3482.04,
              "refseq_upper": 4421.4400000000005
            },
            {
              "metric": "Completeness_Specific",
              "lower": 86.0,
              "upper": null,
              "final_lower": 86.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 86.83,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 88.1225,
              "refseq_upper": 98.3514
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 12.0,
              "final_lower": null,
              "final_upper": 12.0,
              "warn_lower": 0.13,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 11.7,
              "auto_lower": 0.13,
              "auto_upper": 0.8763000000000011,
              "refseq_lower": 1.4465,
              "refseq_upper": 11.653200000000002
            },
            {
              "metric": "N50",
              "lower": 28000.0,
              "upper": null,
              "final_lower": 28000.0,
              "final_upper": null,
              "warn_lower": 44000.0,
              "warn_upper": 508923.56,
              "source": "computed",
              "ml_lower": 28333.92,
              "ml_upper": 508923.56,
              "auto_lower": 28333.92,
              "auto_upper": 508923.56,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 310.0,
              "final_lower": null,
              "final_upper": 310.0,
              "warn_lower": 40.0,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 40.0,
              "ml_upper": 302.52,
              "auto_lower": 40.0,
              "auto_upper": 302.52000000000044,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 87100.89,
              "warn_upper": 1205226.49,
              "source": "computed",
              "ml_lower": 87100.89,
              "ml_upper": 1205226.49,
              "auto_lower": 87100.89,
              "auto_upper": 1205226.4900000005,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2675,
            "refseq_count": 227,
            "final_count": 2675,
            "filtered_out_count": 0,
            "pass_count": 2496,
            "warn_count": 333,
            "fail_count": 202
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Providencia_rettgeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4000000.0,
              "upper": 5100000.0,
              "final_lower": 4000000.0,
              "final_upper": 5100000.0,
              "warn_lower": 4200000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4023756.0,
              "ml_upper": 5073291.28,
              "auto_lower": 4165248.0,
              "auto_upper": 5073291.275,
              "refseq_lower": 4072351.0,
              "refseq_upper": 5055394.0
            },
            {
              "metric": "GC_Content",
              "lower": 39.99,
              "upper": 43.11,
              "final_lower": 39.99,
              "final_upper": 43.11,
              "warn_lower": 40.03,
              "warn_upper": 40.99,
              "source": "computed",
              "ml_lower": 39.9991,
              "ml_upper": 43.1068,
              "auto_lower": 39.999105,
              "auto_upper": 41.06221,
              "refseq_lower": 40.11996,
              "refseq_upper": 42.723459999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3700.0,
              "upper": 4900.0,
              "final_lower": 3700.0,
              "final_upper": 4900.0,
              "warn_lower": 3800.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 3727.0,
              "ml_upper": 4897.0,
              "auto_lower": 3753.625,
              "auto_upper": 4837.600000000001,
              "refseq_lower": 3761.6,
              "refseq_upper": 4887.8
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.49,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.78399999999999,
              "refseq_upper": 99.152
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.06,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 5.04,
              "auto_lower": 0.06,
              "auto_upper": 1.5670000000000028,
              "refseq_lower": 1.266,
              "refseq_upper": 5.013999999999999
            },
            {
              "metric": "N50",
              "lower": 15000.0,
              "upper": null,
              "final_lower": 15000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 664166.7,
              "source": "computed",
              "ml_lower": 15866.35,
              "ml_upper": 664166.7,
              "auto_lower": 15866.35,
              "auto_upper": 664166.7000000008,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 590.0,
              "final_lower": null,
              "final_upper": 590.0,
              "warn_lower": 40.0,
              "warn_upper": 420.0,
              "source": "computed",
              "ml_lower": 40.0,
              "ml_upper": 587.93,
              "auto_lower": 40.0,
              "auto_upper": 587.9250000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 62729.92,
              "warn_upper": 1825617.88,
              "source": "computed",
              "ml_lower": 62729.92,
              "ml_upper": 1825617.88,
              "auto_lower": 62729.925,
              "auto_upper": 1825617.8750000019,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 356,
            "refseq_count": 41,
            "final_count": 356,
            "filtered_out_count": 0,
            "pass_count": 332,
            "warn_count": 31,
            "fail_count": 24
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Providencia_stuartii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4100000.0,
              "upper": 4900000.0,
              "final_lower": 4100000.0,
              "final_upper": 4900000.0,
              "warn_lower": 4200000.0,
              "warn_upper": 4800000.0,
              "source": "computed",
              "ml_lower": 4148865.64,
              "ml_upper": 4860614.0,
              "auto_lower": 4148865.64,
              "auto_upper": 4739310.34,
              "refseq_lower": 4309862.28,
              "refseq_upper": 4856924.56
            },
            {
              "metric": "GC_Content",
              "lower": 41.16,
              "upper": 41.99,
              "final_lower": 41.16,
              "final_upper": 41.99,
              "warn_lower": 41.18,
              "warn_upper": 41.91,
              "source": "computed",
              "ml_lower": 41.1666,
              "ml_upper": 41.9837,
              "auto_lower": 41.166604,
              "auto_upper": 41.975813,
              "refseq_lower": 41.253992000000004,
              "refseq_upper": 41.981924
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3800.0,
              "upper": 4700.0,
              "final_lower": 3800.0,
              "final_upper": 4700.0,
              "warn_lower": 3800.0,
              "warn_upper": 4600.0,
              "source": "computed",
              "ml_lower": 3808.86,
              "ml_upper": 4695.0,
              "auto_lower": 3808.86,
              "auto_upper": 4552.84,
              "refseq_lower": 4016.32,
              "refseq_upper": 4683.96
            },
            {
              "metric": "Completeness_Specific",
              "lower": 87.0,
              "upper": null,
              "final_lower": 87.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 87.04,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 87.1088,
              "refseq_upper": 97.7412
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 9.33,
              "auto_lower": 0.05,
              "auto_upper": 0.9324999999999994,
              "refseq_lower": 1.4660000000000002,
              "refseq_upper": 9.2628
            },
            {
              "metric": "N50",
              "lower": 21000.0,
              "upper": null,
              "final_lower": 21000.0,
              "final_upper": null,
              "warn_lower": 33000.0,
              "warn_upper": 533105.52,
              "source": "computed",
              "ml_lower": 21817.96,
              "ml_upper": 533105.52,
              "auto_lower": 21817.96,
              "auto_upper": 533105.52,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 460.0,
              "final_lower": null,
              "final_upper": 460.0,
              "warn_lower": 54.55,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 54.55,
              "ml_upper": 452.12,
              "auto_lower": 54.55,
              "auto_upper": 452.1199999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 86911.52,
              "warn_upper": 1330056.69,
              "source": "computed",
              "ml_lower": 86911.52,
              "ml_upper": 1330056.69,
              "auto_lower": 86911.52,
              "auto_upper": 1330056.69,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 263,
            "refseq_count": 33,
            "final_count": 263,
            "filtered_out_count": 0,
            "pass_count": 249,
            "warn_count": 22,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Pseudoalteromonas_nigrifaciens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3800000.0,
              "upper": 4300000.0,
              "final_lower": 3800000.0,
              "final_upper": 4300000.0,
              "warn_lower": 3800000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3872287.12,
              "ml_upper": 4274777.0,
              "auto_lower": 3872287.12,
              "auto_upper": 3877189.88,
              "refseq_lower": 4274777.0,
              "refseq_upper": 4274777.0
            },
            {
              "metric": "GC_Content",
              "lower": 39.97,
              "upper": 40.18,
              "final_lower": 39.97,
              "final_upper": 40.18,
              "warn_lower": 39.97,
              "warn_upper": 39.98,
              "source": "computed",
              "ml_lower": 39.9734,
              "ml_upper": 40.173,
              "auto_lower": 39.973392,
              "auto_upper": 39.979808,
              "refseq_lower": 40.173,
              "refseq_upper": 40.173
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4000.0,
              "final_lower": 3400.0,
              "final_upper": 4000.0,
              "warn_lower": 3400.0,
              "warn_upper": 3500.0,
              "source": "computed",
              "ml_lower": 3450.92,
              "ml_upper": 3984.0,
              "auto_lower": 3450.92,
              "auto_upper": 3465.0,
              "refseq_lower": 3984.0,
              "refseq_upper": 3984.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.92,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.92,
              "refseq_upper": 99.92
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.07,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 0.54,
              "auto_lower": 0.07,
              "auto_upper": 0.1,
              "refseq_lower": 0.54,
              "refseq_upper": 0.54
            },
            {
              "metric": "N50",
              "lower": 413000.0,
              "upper": null,
              "final_lower": 413000.0,
              "final_upper": null,
              "warn_lower": 429000.0,
              "warn_upper": 616042.2,
              "source": "computed",
              "ml_lower": 413476.52,
              "ml_upper": 616042.2,
              "auto_lower": 413476.52,
              "auto_upper": 616042.2,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 70.0,
              "final_lower": null,
              "final_upper": 70.0,
              "warn_lower": 35.76,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 35.76,
              "ml_upper": 65.4,
              "auto_lower": 35.76,
              "auto_upper": 65.40000000000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 569237.24,
              "warn_upper": 926241.16,
              "source": "computed",
              "ml_lower": 569237.24,
              "ml_upper": 926241.16,
              "auto_lower": 569237.24,
              "auto_upper": 926241.16,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 185,
            "refseq_count": 1,
            "final_count": 185,
            "filtered_out_count": 0,
            "pass_count": 181,
            "warn_count": 4,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_aeruginosa": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6000000.0,
              "upper": 7800000.0,
              "final_lower": 6000000.0,
              "final_upper": 7800000.0,
              "warn_lower": 6200000.0,
              "warn_upper": 7200000.0,
              "source": "computed",
              "ml_lower": 6020262.0,
              "ml_upper": 7708846.0,
              "auto_lower": 6092598.05,
              "auto_upper": 7298192.100000002,
              "refseq_lower": 6102555.175,
              "refseq_upper": 7554240.615
            },
            {
              "metric": "GC_Content",
              "lower": 65.15,
              "upper": 66.69,
              "final_lower": 65.15,
              "final_upper": 66.69,
              "warn_lower": 65.69,
              "warn_upper": 66.58,
              "source": "computed",
              "ml_lower": 65.1585,
              "ml_upper": 66.6848,
              "auto_lower": 65.52514000000001,
              "auto_upper": 66.6141,
              "refseq_lower": 65.217743,
              "refseq_upper": 66.567837
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5600.0,
              "upper": 7600.0,
              "final_lower": 5600.0,
              "final_upper": 7600.0,
              "warn_lower": 5700.0,
              "warn_upper": 6800.0,
              "source": "computed",
              "ml_lower": 5615.0,
              "ml_upper": 7558.0,
              "auto_lower": 5630.45,
              "auto_upper": 6942.0,
              "refseq_lower": 5683.78,
              "refseq_upper": 7257.37
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.98,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.6063,
              "refseq_upper": 99.82
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.09,
              "auto_lower": 0.0,
              "auto_upper": 1.2,
              "refseq_lower": 0.28,
              "refseq_upper": 2.993699999999999
            },
            {
              "metric": "N50",
              "lower": 42000.0,
              "upper": null,
              "final_lower": 42000.0,
              "final_upper": null,
              "warn_lower": 63000.0,
              "warn_upper": 767772.55,
              "source": "computed",
              "ml_lower": 42671.25,
              "ml_upper": 767772.55,
              "auto_lower": 42671.25,
              "auto_upper": 767772.550000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 430.0,
              "final_lower": null,
              "final_upper": 430.0,
              "warn_lower": 43.0,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 43.0,
              "ml_upper": 422.1,
              "auto_lower": 43.0,
              "auto_upper": 422.1000000000058,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 161108.2,
              "warn_upper": 1560975.5,
              "source": "computed",
              "ml_lower": 161108.2,
              "ml_upper": 1560975.5,
              "auto_lower": 161108.2,
              "auto_upper": 1560975.5000000058,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 40091,
            "refseq_count": 1364,
            "final_count": 40091,
            "filtered_out_count": 0,
            "pass_count": 36211,
            "warn_count": 5346,
            "fail_count": 1732
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_alloputida": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5600000.0,
              "upper": 6800000.0,
              "final_lower": 5600000.0,
              "final_upper": 6800000.0,
              "warn_lower": 5800000.0,
              "warn_upper": 6700000.0,
              "source": "computed",
              "ml_lower": 5699019.75,
              "ml_upper": 6784073.0,
              "auto_lower": 5699019.75,
              "auto_upper": 6727986.5,
              "refseq_lower": 5826756.425,
              "refseq_upper": 6775538.625
            },
            {
              "metric": "GC_Content",
              "lower": 61.19,
              "upper": 62.01,
              "final_lower": 61.19,
              "final_upper": 62.01,
              "warn_lower": 61.22,
              "warn_upper": 61.91,
              "source": "computed",
              "ml_lower": 61.1964,
              "ml_upper": 62.0072,
              "auto_lower": 61.196425000000005,
              "auto_upper": 62.007225,
              "refseq_lower": 61.5236175,
              "refseq_upper": 61.85178
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5100.0,
              "upper": 6400.0,
              "final_lower": 5100.0,
              "final_upper": 6400.0,
              "warn_lower": 5300.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 5183.5,
              "ml_upper": 6349.0,
              "auto_lower": 5183.5,
              "auto_upper": 6346.5,
              "refseq_lower": 5339.45,
              "refseq_upper": 6339.625
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.6,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.6005,
              "refseq_upper": 99.9375
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 1.55,
              "auto_lower": 0.052500000000000005,
              "auto_upper": 1.55,
              "refseq_lower": 0.18525,
              "refseq_upper": 0.4995
            },
            {
              "metric": "N50",
              "lower": 51000.0,
              "upper": null,
              "final_lower": 51000.0,
              "final_upper": null,
              "warn_lower": 65000.0,
              "warn_upper": 314561.25,
              "source": "computed",
              "ml_lower": 51357.0,
              "ml_upper": 314561.25,
              "auto_lower": 51357.0,
              "auto_upper": 314561.25,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 340.0,
              "final_lower": null,
              "final_upper": 340.0,
              "warn_lower": 110.25,
              "warn_upper": 290.0,
              "source": "computed",
              "ml_lower": 110.25,
              "ml_upper": 331.25,
              "auto_lower": 110.25,
              "auto_upper": 331.25,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 176662.25,
              "warn_upper": 870231.5,
              "source": "computed",
              "ml_lower": 176662.25,
              "ml_upper": 870231.5,
              "auto_lower": 176662.25,
              "auto_upper": 870231.5,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 651,
            "refseq_count": 6,
            "final_count": 651,
            "filtered_out_count": 0,
            "pass_count": 597,
            "warn_count": 52,
            "fail_count": 47
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_asiatica": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5500000.0,
              "upper": 7000000.0,
              "final_lower": 5500000.0,
              "final_upper": 7000000.0,
              "warn_lower": 5700000.0,
              "warn_upper": 6600000.0,
              "source": "computed",
              "ml_lower": 5581518.0,
              "ml_upper": 6916942.96,
              "auto_lower": 5673035.815,
              "auto_upper": 6916942.960000001,
              "refseq_lower": 5584053.96,
              "refseq_upper": 6414710.31
            },
            {
              "metric": "GC_Content",
              "lower": 61.88,
              "upper": 63.35,
              "final_lower": 61.88,
              "final_upper": 63.35,
              "warn_lower": 62.14,
              "warn_upper": 62.94,
              "source": "computed",
              "ml_lower": 61.8812,
              "ml_upper": 63.3422,
              "auto_lower": 61.893097,
              "auto_upper": 62.9709075,
              "refseq_lower": 61.90759,
              "refseq_upper": 63.326982
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5100.0,
              "upper": 6800.0,
              "final_lower": 5100.0,
              "final_upper": 6800.0,
              "warn_lower": 5200.0,
              "warn_upper": 6400.0,
              "source": "computed",
              "ml_lower": 5125.0,
              "ml_upper": 6746.86,
              "auto_lower": 5126.895,
              "auto_upper": 6746.855000000001,
              "refseq_lower": 5126.75,
              "refseq_upper": 6057.16
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.24,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.4717,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 2.19,
              "auto_lower": 0.049150000000000006,
              "auto_upper": 1.9402000000000008,
              "refseq_lower": 0.11,
              "refseq_upper": 2.1508
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 44000.0,
              "warn_upper": 429091.74,
              "source": "computed",
              "ml_lower": 31218.78,
              "ml_upper": 429091.74,
              "auto_lower": 31218.785,
              "auto_upper": 429091.74000000017,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 360.0,
              "final_lower": null,
              "final_upper": 360.0,
              "warn_lower": 70.24,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 70.24,
              "ml_upper": 359.47,
              "auto_lower": 70.235,
              "auto_upper": 359.46500000000026,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 130750.78,
              "warn_upper": 1014935.25,
              "source": "computed",
              "ml_lower": 130750.78,
              "ml_upper": 1014935.25,
              "auto_lower": 130750.785,
              "auto_upper": 1014935.25,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 184,
            "refseq_count": 15,
            "final_count": 184,
            "filtered_out_count": 0,
            "pass_count": 170,
            "warn_count": 19,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_avellanae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5700000.0,
              "upper": 6600000.0,
              "final_lower": 5700000.0,
              "final_upper": 6600000.0,
              "warn_lower": 5800000.0,
              "warn_upper": 6500000.0,
              "source": "computed",
              "ml_lower": 5740914.12,
              "ml_upper": 6576340.0,
              "auto_lower": 5740914.125,
              "auto_upper": 6477148.375,
              "refseq_lower": 6226286.69,
              "refseq_upper": 6575398.31
            },
            {
              "metric": "GC_Content",
              "lower": 58.25,
              "upper": 58.89,
              "final_lower": 58.25,
              "final_upper": 58.89,
              "warn_lower": 58.32,
              "warn_upper": 58.81,
              "source": "computed",
              "ml_lower": 58.2561,
              "ml_upper": 58.8875,
              "auto_lower": 58.2561375,
              "auto_upper": 58.887525000000004,
              "refseq_lower": 58.314353000000004,
              "refseq_upper": 58.585217
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5100.0,
              "upper": 6100.0,
              "final_lower": 5100.0,
              "final_upper": 6100.0,
              "warn_lower": 5300.0,
              "warn_upper": 6100.0,
              "source": "computed",
              "ml_lower": 5165.12,
              "ml_upper": 6091.88,
              "auto_lower": 5165.125,
              "auto_upper": 6091.875,
              "refseq_lower": 5730.87,
              "refseq_upper": 6031.83
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.5,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.5011,
              "refseq_upper": 99.6693
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.06,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 1.2,
              "auto_lower": 0.06125,
              "auto_upper": 1.205,
              "refseq_lower": 0.19,
              "refseq_upper": 0.2692
            },
            {
              "metric": "N50",
              "lower": 32000.0,
              "upper": null,
              "final_lower": 32000.0,
              "final_upper": null,
              "warn_lower": 38000.0,
              "warn_upper": 187759.5,
              "source": "computed",
              "ml_lower": 32057.12,
              "ml_upper": 187759.5,
              "auto_lower": 32057.125,
              "auto_upper": 187759.5,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 520.0,
              "final_lower": null,
              "final_upper": 520.0,
              "warn_lower": 169.0,
              "warn_upper": 450.0,
              "source": "computed",
              "ml_lower": 169.0,
              "ml_upper": 514.62,
              "auto_lower": 169.0,
              "auto_upper": 514.625,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 111791.62,
              "warn_upper": 458732.62,
              "source": "computed",
              "ml_lower": 111791.62,
              "ml_upper": 458732.62,
              "auto_lower": 111791.625,
              "auto_upper": 458732.625,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 426,
            "refseq_count": 3,
            "final_count": 426,
            "filtered_out_count": 0,
            "pass_count": 393,
            "warn_count": 36,
            "fail_count": 23
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_fluorescens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5800000.0,
              "upper": 7500000.0,
              "final_lower": 5800000.0,
              "final_upper": 7500000.0,
              "warn_lower": 5900000.0,
              "warn_upper": 7500000.0,
              "source": "computed",
              "ml_lower": 5888353.96,
              "ml_upper": 7479479.92,
              "auto_lower": 5888353.96,
              "auto_upper": 7479479.92,
              "refseq_lower": 5940391.2,
              "refseq_upper": 7100959.8
            },
            {
              "metric": "GC_Content",
              "lower": 58.8,
              "upper": 65.91,
              "final_lower": 58.8,
              "final_upper": 65.91,
              "warn_lower": 58.83,
              "warn_upper": 61.28,
              "source": "computed",
              "ml_lower": 58.8016,
              "ml_upper": 65.9034,
              "auto_lower": 58.8297,
              "auto_upper": 62.27287199999999,
              "refseq_lower": 58.825975,
              "refseq_upper": 65.36934000000001
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5200.0,
              "upper": 6900.0,
              "final_lower": 5200.0,
              "final_upper": 6900.0,
              "warn_lower": 5300.0,
              "warn_upper": 6900.0,
              "source": "computed",
              "ml_lower": 5218.32,
              "ml_upper": 6868.92,
              "auto_lower": 5218.32,
              "auto_upper": 6868.92,
              "refseq_lower": 5475.3,
              "refseq_upper": 6469.5
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.76,
              "ml_upper": 100.0,
              "auto_lower": 99.98479999999999,
              "auto_upper": 100.0,
              "refseq_lower": 90.65100000000001,
              "refseq_upper": 99.8
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.03,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 5.42,
              "auto_lower": 0.0296,
              "auto_upper": 2.2159999999999997,
              "refseq_lower": 0.1105,
              "refseq_upper": 5.111000000000002
            },
            {
              "metric": "N50",
              "lower": 44000.0,
              "upper": null,
              "final_lower": 44000.0,
              "final_upper": null,
              "warn_lower": 46000.0,
              "warn_upper": 548866.72,
              "source": "computed",
              "ml_lower": 44033.16,
              "ml_upper": 548866.72,
              "auto_lower": 44033.16,
              "auto_upper": 548866.72,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 47.76,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 47.76,
              "ml_upper": 321.52,
              "auto_lower": 47.76,
              "auto_upper": 321.52,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 153918.48,
              "warn_upper": 1020798.88,
              "source": "computed",
              "ml_lower": 153918.48,
              "ml_upper": 1020798.88,
              "auto_lower": 153918.48,
              "auto_upper": 1020798.8799999995,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 97,
            "refseq_count": 31,
            "final_count": 97,
            "filtered_out_count": 0,
            "pass_count": 90,
            "warn_count": 11,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_fulva": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 5800000.0,
              "final_lower": 4700000.0,
              "final_upper": 5800000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4714084.44,
              "ml_upper": 5757765.0,
              "auto_lower": 4714084.44,
              "auto_upper": 5360064.96,
              "refseq_lower": 4757063.76,
              "refseq_upper": 5750747.72
            },
            {
              "metric": "GC_Content",
              "lower": 60.64,
              "upper": 64.05,
              "final_lower": 60.64,
              "final_upper": 64.05,
              "warn_lower": 61.21,
              "warn_upper": 61.87,
              "source": "computed",
              "ml_lower": 60.6495,
              "ml_upper": 64.0418,
              "auto_lower": 61.218360000000004,
              "auto_upper": 61.9758,
              "refseq_lower": 60.65574,
              "refseq_upper": 63.99939199999999
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4200.0,
              "upper": 5500.0,
              "final_lower": 4200.0,
              "final_upper": 5500.0,
              "warn_lower": 4200.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 4231.64,
              "ml_upper": 5425.0,
              "auto_lower": 4231.64,
              "auto_upper": 4981.68,
              "refseq_lower": 4334.28,
              "refseq_upper": 5416.84
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.06,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.0928,
              "refseq_upper": 98.69
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.05,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 9.47,
              "auto_lower": 0.05,
              "auto_upper": 1.18,
              "refseq_lower": 1.1068,
              "refseq_upper": 9.3412
            },
            {
              "metric": "N50",
              "lower": 122000.0,
              "upper": null,
              "final_lower": 122000.0,
              "final_upper": null,
              "warn_lower": 125000.0,
              "warn_upper": 394973.64,
              "source": "computed",
              "ml_lower": 122055.52,
              "ml_upper": 394973.64,
              "auto_lower": 122055.52,
              "auto_upper": 394973.64000000013,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 53.04,
              "warn_upper": 150.0,
              "source": "computed",
              "ml_lower": 53.04,
              "ml_upper": 201.2,
              "auto_lower": 53.04,
              "auto_upper": 201.20000000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 303284.44,
              "warn_upper": 705493.08,
              "source": "computed",
              "ml_lower": 303284.44,
              "ml_upper": 705493.08,
              "auto_lower": 303284.44,
              "auto_upper": 705493.08,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 105,
            "refseq_count": 17,
            "final_count": 105,
            "filtered_out_count": 0,
            "pass_count": 99,
            "warn_count": 10,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_glycinae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6300000.0,
              "upper": 6500000.0,
              "final_lower": 6300000.0,
              "final_upper": 6500000.0,
              "warn_lower": 6300000.0,
              "warn_upper": 6500000.0,
              "source": "computed",
              "ml_lower": 6393889.7,
              "ml_upper": 6422280.98,
              "auto_lower": 6393889.7,
              "auto_upper": 6422280.975,
              "refseq_lower": 6396728.0,
              "refseq_upper": 6396728.0
            },
            {
              "metric": "GC_Content",
              "lower": 60.47,
              "upper": 60.58,
              "final_lower": 60.47,
              "final_upper": 60.58,
              "warn_lower": 60.54,
              "warn_upper": 60.57,
              "source": "computed",
              "ml_lower": 60.4786,
              "ml_upper": 60.5751,
              "auto_lower": 60.54429,
              "auto_upper": 60.57506,
              "refseq_lower": 60.4786,
              "refseq_upper": 60.4786
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5700.0,
              "upper": 5900.0,
              "final_lower": 5700.0,
              "final_upper": 5900.0,
              "warn_lower": 5700.0,
              "warn_upper": 5800.0,
              "source": "computed",
              "ml_lower": 5747.85,
              "ml_upper": 5868.0,
              "auto_lower": 5747.85,
              "auto_upper": 5804.375,
              "refseq_lower": 5868.0,
              "refseq_upper": 5868.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.72,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.72,
              "refseq_upper": 98.72
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 1.91,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 1.91,
              "ml_upper": 4.6,
              "auto_lower": 1.91,
              "auto_upper": 2.32075,
              "refseq_lower": 4.6,
              "refseq_upper": 4.6
            },
            {
              "metric": "N50",
              "lower": 133000.0,
              "upper": null,
              "final_lower": 133000.0,
              "final_upper": null,
              "warn_lower": 158000.0,
              "warn_upper": 543970.0,
              "source": "computed",
              "ml_lower": 133753.8,
              "ml_upper": 543970.0,
              "auto_lower": 133753.8,
              "auto_upper": 543970.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 160.0,
              "final_lower": null,
              "final_upper": 160.0,
              "warn_lower": 53.0,
              "warn_upper": 150.0,
              "source": "computed",
              "ml_lower": 53.0,
              "ml_upper": 151.52,
              "auto_lower": 53.0,
              "auto_upper": 151.52499999999947,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 323887.25,
              "warn_upper": 1015777.45,
              "source": "computed",
              "ml_lower": 323887.25,
              "ml_upper": 1015777.45,
              "auto_lower": 323887.25,
              "auto_upper": 1015777.45,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 186,
            "refseq_count": 1,
            "final_count": 186,
            "filtered_out_count": 0,
            "pass_count": 179,
            "warn_count": 10,
            "fail_count": 17
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_juntendi": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5300000.0,
              "upper": 6200000.0,
              "final_lower": 5300000.0,
              "final_upper": 6200000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 6100000.0,
              "source": "computed",
              "ml_lower": 5318923.1,
              "ml_upper": 6183319.6,
              "auto_lower": 5318923.1,
              "auto_upper": 6183319.6,
              "refseq_lower": 5583901.72,
              "refseq_upper": 6062360.96
            },
            {
              "metric": "GC_Content",
              "lower": 61.83,
              "upper": 62.64,
              "final_lower": 61.83,
              "final_upper": 62.64,
              "warn_lower": 61.92,
              "warn_upper": 62.57,
              "source": "computed",
              "ml_lower": 61.8377,
              "ml_upper": 62.6373,
              "auto_lower": 61.845455,
              "auto_upper": 62.637265,
              "refseq_lower": 61.837892,
              "refseq_upper": 62.41226
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4900.0,
              "upper": 5900.0,
              "final_lower": 4900.0,
              "final_upper": 5900.0,
              "warn_lower": 4900.0,
              "warn_upper": 5800.0,
              "source": "computed",
              "ml_lower": 4903.6,
              "ml_upper": 5829.65,
              "auto_lower": 4903.6,
              "auto_upper": 5829.65,
              "refseq_lower": 5231.24,
              "refseq_upper": 5765.12
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.68,
              "ml_upper": 100.0,
              "auto_lower": 99.92450000000001,
              "auto_upper": 100.0,
              "refseq_lower": 99.68,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.07,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.07,
              "ml_upper": 2.43,
              "auto_lower": 0.07450000000000001,
              "auto_upper": 1.46,
              "refseq_lower": 0.23399999999999999,
              "refseq_upper": 2.4068
            },
            {
              "metric": "N50",
              "lower": 45000.0,
              "upper": null,
              "final_lower": 45000.0,
              "final_upper": null,
              "warn_lower": 47000.0,
              "warn_upper": 164030.3,
              "source": "computed",
              "ml_lower": 45432.55,
              "ml_upper": 164030.3,
              "auto_lower": 45432.55,
              "auto_upper": 164030.29999999987,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 360.0,
              "final_lower": null,
              "final_upper": 360.0,
              "warn_lower": 132.8,
              "warn_upper": 330.0,
              "source": "computed",
              "ml_lower": 132.8,
              "ml_upper": 352.3,
              "auto_lower": 132.8,
              "auto_upper": 352.29999999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 155276.75,
              "warn_upper": 473259.0,
              "source": "computed",
              "ml_lower": 155276.75,
              "ml_upper": 473259.0,
              "auto_lower": 155276.75,
              "auto_upper": 473258.99999999994,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 91,
            "refseq_count": 9,
            "final_count": 91,
            "filtered_out_count": 0,
            "pass_count": 81,
            "warn_count": 11,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_marginalis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6500000.0,
              "upper": 7600000.0,
              "final_lower": 6500000.0,
              "final_upper": 7600000.0,
              "warn_lower": 6600000.0,
              "warn_upper": 7200000.0,
              "source": "computed",
              "ml_lower": 6576176.0,
              "ml_upper": 7581541.0,
              "auto_lower": 6656245.8,
              "auto_upper": 7123484.92,
              "refseq_lower": 6579831.6,
              "refseq_upper": 7567304.125
            },
            {
              "metric": "GC_Content",
              "lower": 59.85,
              "upper": 61.04,
              "final_lower": 59.85,
              "final_upper": 61.04,
              "warn_lower": 60.08,
              "warn_upper": 60.56,
              "source": "computed",
              "ml_lower": 59.8513,
              "ml_upper": 61.0316,
              "auto_lower": 60.0812,
              "auto_upper": 60.557636,
              "refseq_lower": 59.864265,
              "refseq_upper": 61.030834999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6000.0,
              "upper": 7100.0,
              "final_lower": 6000.0,
              "final_upper": 7100.0,
              "warn_lower": 6000.0,
              "warn_upper": 6600.0,
              "source": "computed",
              "ml_lower": 6019.0,
              "ml_upper": 7086.0,
              "auto_lower": 6019.0,
              "auto_upper": 6571.84,
              "refseq_lower": 6034.15,
              "refseq_upper": 7070.724999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.29,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.29975,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 7.13,
              "auto_lower": 0.01,
              "auto_upper": 1.39,
              "refseq_lower": 0.72,
              "refseq_upper": 7.020749999999999
            },
            {
              "metric": "N50",
              "lower": 34000.0,
              "upper": null,
              "final_lower": 34000.0,
              "final_upper": null,
              "warn_lower": 54000.0,
              "warn_upper": 386843.52,
              "source": "computed",
              "ml_lower": 34593.72,
              "ml_upper": 386843.52,
              "auto_lower": 34593.72,
              "auto_upper": 386843.52,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 350.0,
              "final_lower": null,
              "final_upper": 350.0,
              "warn_lower": 52.0,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 52.0,
              "ml_upper": 345.96,
              "auto_lower": 52.0,
              "auto_upper": 345.96000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 149584.88,
              "warn_upper": 1281810.48,
              "source": "computed",
              "ml_lower": 149584.88,
              "ml_upper": 1281810.48,
              "auto_lower": 149584.88,
              "auto_upper": 1281810.48,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 977,
            "refseq_count": 6,
            "final_count": 977,
            "filtered_out_count": 0,
            "pass_count": 989,
            "warn_count": 43,
            "fail_count": 59
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_monteilii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5500000.0,
              "upper": 6900000.0,
              "final_lower": 5500000.0,
              "final_upper": 6900000.0,
              "warn_lower": 5500000.0,
              "warn_upper": 6800000.0,
              "source": "computed",
              "ml_lower": 5587077.6,
              "ml_upper": 6834208.4,
              "auto_lower": 5587077.6,
              "auto_upper": 6834208.4,
              "refseq_lower": 5643305.08,
              "refseq_upper": 6352186.2
            },
            {
              "metric": "GC_Content",
              "lower": 61.31,
              "upper": 62.5,
              "final_lower": 61.31,
              "final_upper": 62.5,
              "warn_lower": 61.43,
              "warn_upper": 62.23,
              "source": "computed",
              "ml_lower": 61.3115,
              "ml_upper": 62.4933,
              "auto_lower": 61.3115,
              "auto_upper": 62.3677,
              "refseq_lower": 61.47368,
              "refseq_upper": 62.490732
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5000.0,
              "upper": 6500.0,
              "final_lower": 5000.0,
              "final_upper": 6500.0,
              "warn_lower": 5100.0,
              "warn_upper": 6300.0,
              "source": "computed",
              "ml_lower": 5089.6,
              "ml_upper": 6405.8,
              "auto_lower": 5089.6,
              "auto_upper": 6405.800000000002,
              "refseq_lower": 5204.16,
              "refseq_upper": 6005.32
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.07,
              "ml_upper": 100.0,
              "auto_lower": 99.938,
              "auto_upper": 100.0,
              "refseq_lower": 91.0732,
              "refseq_upper": 98.642
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 5.65,
              "auto_lower": 0.01,
              "auto_upper": 2.6300000000000043,
              "refseq_lower": 1.14,
              "refseq_upper": 5.65
            },
            {
              "metric": "N50",
              "lower": 42000.0,
              "upper": null,
              "final_lower": 42000.0,
              "final_upper": null,
              "warn_lower": 53000.0,
              "warn_upper": 515128.6,
              "source": "computed",
              "ml_lower": 42650.4,
              "ml_upper": 515128.6,
              "auto_lower": 42650.4,
              "auto_upper": 515128.60000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 360.0,
              "final_lower": null,
              "final_upper": 360.0,
              "warn_lower": 66.0,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 66.0,
              "ml_upper": 355.6,
              "auto_lower": 66.0,
              "auto_upper": 355.6000000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 137271.8,
              "warn_upper": 1022778.0,
              "source": "computed",
              "ml_lower": 137271.8,
              "ml_upper": 1022778.0,
              "auto_lower": 137271.8,
              "auto_upper": 1022778.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 121,
            "refseq_count": 17,
            "final_count": 121,
            "filtered_out_count": 0,
            "pass_count": 106,
            "warn_count": 14,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_paracarnis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5900000.0,
              "upper": 6600000.0,
              "final_lower": 5900000.0,
              "final_upper": 6600000.0,
              "warn_lower": 5900000.0,
              "warn_upper": 6600000.0,
              "source": "computed",
              "ml_lower": 5922361.82,
              "ml_upper": 6592594.16,
              "auto_lower": 5922361.82,
              "auto_upper": 6592594.165,
              "refseq_lower": 6326461.0,
              "refseq_upper": 6326461.0
            },
            {
              "metric": "GC_Content",
              "lower": 59.65,
              "upper": 60.2,
              "final_lower": 59.65,
              "final_upper": 60.2,
              "warn_lower": 59.73,
              "warn_upper": 60.2,
              "source": "computed",
              "ml_lower": 59.6586,
              "ml_upper": 60.1998,
              "auto_lower": 59.658646000000005,
              "auto_upper": 60.199818,
              "refseq_lower": 59.8594,
              "refseq_upper": 59.8594
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5300.0,
              "upper": 6100.0,
              "final_lower": 5300.0,
              "final_upper": 6100.0,
              "warn_lower": 5300.0,
              "warn_upper": 6100.0,
              "source": "computed",
              "ml_lower": 5333.28,
              "ml_upper": 6051.04,
              "auto_lower": 5333.28,
              "auto_upper": 6051.045,
              "refseq_lower": 5818.0,
              "refseq_upper": 5818.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.05,
              "refseq_upper": 99.05
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.8,
              "auto_lower": 0.0,
              "auto_upper": 0.8049500000000018,
              "refseq_lower": 0.8,
              "refseq_upper": 0.8
            },
            {
              "metric": "N50",
              "lower": 54000.0,
              "upper": null,
              "final_lower": 54000.0,
              "final_upper": null,
              "warn_lower": 64000.0,
              "warn_upper": 369773.91,
              "source": "computed",
              "ml_lower": 54235.9,
              "ml_upper": 369773.91,
              "auto_lower": 54235.9,
              "auto_upper": 369773.9050000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 260.0,
              "final_lower": null,
              "final_upper": 260.0,
              "warn_lower": 56.91,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 56.91,
              "ml_upper": 258.86,
              "auto_lower": 56.91,
              "auto_upper": 258.8550000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 155796.16,
              "warn_upper": 804605.44,
              "source": "computed",
              "ml_lower": 155796.16,
              "ml_upper": 804605.44,
              "auto_lower": 155796.155,
              "auto_upper": 804605.4400000023,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 392,
            "refseq_count": 1,
            "final_count": 392,
            "filtered_out_count": 0,
            "pass_count": 379,
            "warn_count": 20,
            "fail_count": 43
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_protegens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6500000.0,
              "upper": 7400000.0,
              "final_lower": 6500000.0,
              "final_upper": 7400000.0,
              "warn_lower": 6600000.0,
              "warn_upper": 7200000.0,
              "source": "computed",
              "ml_lower": 6563070.35,
              "ml_upper": 7356574.52,
              "auto_lower": 6563070.35,
              "auto_upper": 7356574.525,
              "refseq_lower": 6672367.5,
              "refseq_upper": 7218111.4
            },
            {
              "metric": "GC_Content",
              "lower": 61.98,
              "upper": 63.54,
              "final_lower": 61.98,
              "final_upper": 63.54,
              "warn_lower": 62.18,
              "warn_upper": 63.49,
              "source": "computed",
              "ml_lower": 61.9863,
              "ml_upper": 63.5345,
              "auto_lower": 62.1379775,
              "auto_upper": 63.5344975,
              "refseq_lower": 61.99038,
              "refseq_upper": 63.40148
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5900.0,
              "upper": 6800.0,
              "final_lower": 5900.0,
              "final_upper": 6800.0,
              "warn_lower": 5900.0,
              "warn_upper": 6500.0,
              "source": "computed",
              "ml_lower": 5912.65,
              "ml_upper": 6720.0,
              "auto_lower": 5912.65,
              "auto_upper": 6635.399999999999,
              "refseq_lower": 6032.75,
              "refseq_upper": 6703.05
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.24,
              "ml_upper": 100.0,
              "auto_lower": 99.9625,
              "auto_upper": 100.0,
              "refseq_lower": 97.35549999999999,
              "refseq_upper": 99.68
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.13,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 1.85,
              "auto_lower": 0.127,
              "auto_upper": 1.85,
              "refseq_lower": 0.448,
              "refseq_upper": 1.76
            },
            {
              "metric": "N50",
              "lower": 54000.0,
              "upper": null,
              "final_lower": 54000.0,
              "final_upper": null,
              "warn_lower": 66000.0,
              "warn_upper": 1234532.45,
              "source": "computed",
              "ml_lower": 54414.92,
              "ml_upper": 1234532.45,
              "auto_lower": 54414.925,
              "auto_upper": 1234532.449999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 340.0,
              "final_lower": null,
              "final_upper": 340.0,
              "warn_lower": 18.92,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 18.92,
              "ml_upper": 335.45,
              "auto_lower": 18.925,
              "auto_upper": 335.44999999999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 173652.8,
              "warn_upper": 2480282.2,
              "source": "computed",
              "ml_lower": 173652.8,
              "ml_upper": 2480282.2,
              "auto_lower": 173652.8,
              "auto_upper": 2480282.1999999965,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 186,
            "refseq_count": 31,
            "final_count": 186,
            "filtered_out_count": 0,
            "pass_count": 166,
            "warn_count": 20,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_putida": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 7500000.0,
              "final_lower": 4900000.0,
              "final_upper": 7500000.0,
              "warn_lower": 5300000.0,
              "warn_upper": 7100000.0,
              "source": "computed",
              "ml_lower": 4941088.18,
              "ml_upper": 7467685.0,
              "auto_lower": 4941088.18,
              "auto_upper": 7118827.77,
              "refseq_lower": 5525646.925,
              "refseq_upper": 7268208.925000001
            },
            {
              "metric": "GC_Content",
              "lower": 59.22,
              "upper": 63.64,
              "final_lower": 59.22,
              "final_upper": 63.64,
              "warn_lower": 60.06,
              "warn_upper": 63.35,
              "source": "computed",
              "ml_lower": 59.2265,
              "ml_upper": 63.6372,
              "auto_lower": 59.973337,
              "auto_upper": 63.637246,
              "refseq_lower": 59.8204845,
              "refseq_upper": 63.0772345
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 7100.0,
              "final_lower": 4400.0,
              "final_upper": 7100.0,
              "warn_lower": 4800.0,
              "warn_upper": 6700.0,
              "source": "computed",
              "ml_lower": 4439.1,
              "ml_upper": 7087.0,
              "auto_lower": 4439.1,
              "auto_upper": 6814.45,
              "refseq_lower": 5101.52,
              "refseq_upper": 6839.530000000001
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.52,
              "ml_upper": 100.0,
              "auto_lower": 99.9824,
              "auto_upper": 100.0,
              "refseq_lower": 95.96799999999999,
              "refseq_upper": 99.9
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 10.0,
              "final_lower": null,
              "final_upper": 10.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 9.85,
              "auto_lower": 0.008100000000000001,
              "auto_upper": 2.0536999999999948,
              "refseq_lower": 0.14,
              "refseq_upper": 6.937999999999988
            },
            {
              "metric": "N50",
              "lower": 32000.0,
              "upper": null,
              "final_lower": 32000.0,
              "final_upper": null,
              "warn_lower": 40000.0,
              "warn_upper": 599470.51,
              "source": "computed",
              "ml_lower": 32809.16,
              "ml_upper": 599470.51,
              "auto_lower": 32809.16,
              "auto_upper": 599470.5099999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 460.0,
              "final_lower": null,
              "final_upper": 460.0,
              "warn_lower": 29.0,
              "warn_upper": 390.0,
              "source": "computed",
              "ml_lower": 29.0,
              "ml_upper": 455.46,
              "auto_lower": 29.0,
              "auto_upper": 455.45999999999947,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 136726.91,
              "warn_upper": 1807266.57,
              "source": "computed",
              "ml_lower": 136726.91,
              "ml_upper": 1807266.57,
              "auto_lower": 136726.91,
              "auto_upper": 1807266.5699999994,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 163,
            "refseq_count": 114,
            "final_count": 163,
            "filtered_out_count": 0,
            "pass_count": 146,
            "warn_count": 15,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Pseudomonas_syringae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5400000.0,
              "upper": 6800000.0,
              "final_lower": 5400000.0,
              "final_upper": 6800000.0,
              "warn_lower": 5800000.0,
              "warn_upper": 6300000.0,
              "source": "computed",
              "ml_lower": 5448011.0,
              "ml_upper": 6747342.0,
              "auto_lower": 5804534.8,
              "auto_upper": 6362512.6,
              "refseq_lower": 5463785.405,
              "refseq_upper": 6744634.995
            },
            {
              "metric": "GC_Content",
              "lower": 58.02,
              "upper": 61.07,
              "final_lower": 58.02,
              "final_upper": 61.07,
              "warn_lower": 58.79,
              "warn_upper": 59.39,
              "source": "computed",
              "ml_lower": 58.0207,
              "ml_upper": 61.0607,
              "auto_lower": 58.48574,
              "auto_upper": 61.060700000000004,
              "refseq_lower": 58.0300525,
              "refseq_upper": 60.1022695
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4800.0,
              "upper": 6200.0,
              "final_lower": 4800.0,
              "final_upper": 6200.0,
              "warn_lower": 4900.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 4828.0,
              "ml_upper": 6122.0,
              "auto_lower": 4959.2,
              "auto_upper": 5657.799999999998,
              "refseq_lower": 4843.66,
              "refseq_upper": 6118.955
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.61,
              "ml_upper": 100.0,
              "auto_lower": 99.964,
              "auto_upper": 100.0,
              "refseq_lower": 91.77195,
              "refseq_upper": 99.73
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 11.0,
              "final_lower": null,
              "final_upper": 11.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 10.79,
              "auto_lower": 0.0,
              "auto_upper": 0.7639999999999998,
              "refseq_lower": 0.2487,
              "refseq_upper": 8.310499999999987
            },
            {
              "metric": "N50",
              "lower": 37000.0,
              "upper": null,
              "final_lower": 37000.0,
              "final_upper": null,
              "warn_lower": 60000.0,
              "warn_upper": 409791.4,
              "source": "computed",
              "ml_lower": 37053.2,
              "ml_upper": 409791.4,
              "auto_lower": 37053.2,
              "auto_upper": 409791.39999999956,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 410.0,
              "final_lower": null,
              "final_upper": 410.0,
              "warn_lower": 48.2,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 48.2,
              "ml_upper": 408.0,
              "auto_lower": 48.2,
              "auto_upper": 407.9999999999975,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 141898.8,
              "warn_upper": 1279805.8,
              "source": "computed",
              "ml_lower": 141898.8,
              "ml_upper": 1279805.8,
              "auto_lower": 141898.8,
              "auto_upper": 1279805.7999999993,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 161,
            "refseq_count": 88,
            "final_count": 161,
            "filtered_out_count": 0,
            "pass_count": 147,
            "warn_count": 21,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Ralstonia_pseudosolanacearum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5300000.0,
              "upper": 6200000.0,
              "final_lower": 5300000.0,
              "final_upper": 6200000.0,
              "warn_lower": 5400000.0,
              "warn_upper": 6200000.0,
              "source": "computed",
              "ml_lower": 5382515.7,
              "ml_upper": 6171365.0,
              "auto_lower": 5382515.7,
              "auto_upper": 6170239.58,
              "refseq_lower": 5521640.525,
              "refseq_upper": 6168578.975
            },
            {
              "metric": "GC_Content",
              "lower": 66.43,
              "upper": 67.16,
              "final_lower": 66.43,
              "final_upper": 67.16,
              "warn_lower": 66.44,
              "warn_upper": 67.08,
              "source": "computed",
              "ml_lower": 66.4399,
              "ml_upper": 67.1506,
              "auto_lower": 66.439866,
              "auto_upper": 67.15060799999999,
              "refseq_lower": 66.5586575,
              "refseq_upper": 67.07136249999999
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4700.0,
              "upper": 5600.0,
              "final_lower": 4700.0,
              "final_upper": 5600.0,
              "warn_lower": 4800.0,
              "warn_upper": 5600.0,
              "source": "computed",
              "ml_lower": 4715.02,
              "ml_upper": 5529.0,
              "auto_lower": 4715.02,
              "auto_upper": 5528.34,
              "refseq_lower": 4937.975,
              "refseq_upper": 5521.575
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.24,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.63425000000001,
              "refseq_upper": 99.97
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 2.36,
              "auto_lower": 0.006600000000000002,
              "auto_upper": 0.623599999999999,
              "refseq_lower": 0.0743,
              "refseq_upper": 2.3357
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 43000.0,
              "warn_upper": 160932.14,
              "source": "computed",
              "ml_lower": 33656.74,
              "ml_upper": 160932.14,
              "auto_lower": 33656.74,
              "auto_upper": 160932.1399999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 470.0,
              "final_lower": null,
              "final_upper": 470.0,
              "warn_lower": 111.92,
              "warn_upper": 410.0,
              "source": "computed",
              "ml_lower": 111.92,
              "ml_upper": 468.68,
              "auto_lower": 111.92,
              "auto_upper": 468.67999999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 126708.66,
              "warn_upper": 604051.0,
              "source": "computed",
              "ml_lower": 126708.66,
              "ml_upper": 604051.0,
              "auto_lower": 126708.66,
              "auto_upper": 604051.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 333,
            "refseq_count": 166,
            "final_count": 333,
            "filtered_out_count": 0,
            "pass_count": 312,
            "warn_count": 25,
            "fail_count": 21
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Ralstonia_solanacearum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5000000.0,
              "upper": 5900000.0,
              "final_lower": 5000000.0,
              "final_upper": 5900000.0,
              "warn_lower": 5100000.0,
              "warn_upper": 5600000.0,
              "source": "computed",
              "ml_lower": 5036094.64,
              "ml_upper": 5872605.0,
              "auto_lower": 5036094.64,
              "auto_upper": 5705056.09,
              "refseq_lower": 5391571.375,
              "refseq_upper": 5851108.005
            },
            {
              "metric": "GC_Content",
              "lower": 66.31,
              "upper": 66.81,
              "final_lower": 66.31,
              "final_upper": 66.81,
              "warn_lower": 66.56,
              "warn_upper": 66.78,
              "source": "computed",
              "ml_lower": 66.3181,
              "ml_upper": 66.8043,
              "auto_lower": 66.515148,
              "auto_upper": 66.804328,
              "refseq_lower": 66.319036,
              "refseq_upper": 66.690984
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 5300.0,
              "final_lower": 4300.0,
              "final_upper": 5300.0,
              "warn_lower": 4500.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 4388.5,
              "ml_upper": 5257.0,
              "auto_lower": 4388.505,
              "auto_upper": 5048.805,
              "refseq_lower": 4813.535,
              "refseq_upper": 5232.43
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.04,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 90.6991,
              "refseq_upper": 98.8188
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.08,
              "auto_lower": 0.0,
              "auto_upper": 0.1723000000000002,
              "refseq_lower": 0.6285,
              "refseq_upper": 4.08
            },
            {
              "metric": "N50",
              "lower": 52000.0,
              "upper": null,
              "final_lower": 52000.0,
              "final_upper": null,
              "warn_lower": 60000.0,
              "warn_upper": 143422.2,
              "source": "computed",
              "ml_lower": 52809.94,
              "ml_upper": 143422.2,
              "auto_lower": 52809.935,
              "auto_upper": 143422.19500000012,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 104.66,
              "warn_upper": 240.0,
              "source": "computed",
              "ml_lower": 104.66,
              "ml_upper": 323.5,
              "auto_lower": 104.655,
              "auto_upper": 323.4950000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 183458.86,
              "warn_upper": 574707.1,
              "source": "computed",
              "ml_lower": 183458.86,
              "ml_upper": 574707.1,
              "auto_lower": 183458.86,
              "auto_upper": 574707.1000000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 378,
            "refseq_count": 40,
            "final_count": 378,
            "filtered_out_count": 0,
            "pass_count": 351,
            "warn_count": 68,
            "fail_count": 29
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Renibacterium_salmoninarum": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3000000.0,
              "upper": 3100000.0,
              "final_lower": 3000000.0,
              "final_upper": 3100000.0,
              "warn_lower": 3000000.0,
              "warn_upper": 3100000.0,
              "source": "computed",
              "ml_lower": 3060847.0,
              "ml_upper": 3061134.0,
              "auto_lower": 3060847.025,
              "auto_upper": 3061134.0,
              "refseq_lower": 3155228.0,
              "refseq_upper": 3155332.0
            },
            {
              "metric": "GC_Content",
              "lower": 56.25,
              "upper": 56.26,
              "final_lower": 56.25,
              "final_upper": 56.26,
              "warn_lower": 56.25,
              "warn_upper": 56.26,
              "source": "computed",
              "ml_lower": 56.2573,
              "ml_upper": 56.2581,
              "auto_lower": 56.257319608105114,
              "auto_upper": 56.258069301857326,
              "refseq_lower": 56.2706,
              "refseq_upper": 56.2713
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 3500.0,
              "final_lower": 3400.0,
              "final_upper": 3500.0,
              "warn_lower": 3400.0,
              "warn_upper": 3500.0,
              "source": "computed",
              "ml_lower": 3401.0,
              "ml_upper": 3413.0,
              "auto_lower": 3401.075,
              "auto_upper": 3412.975,
              "refseq_lower": 3327.03,
              "refseq_upper": 3554.58
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.97,
              "source": "computed",
              "ml_lower": 99.95,
              "ml_upper": 99.97,
              "auto_lower": 99.95,
              "auto_upper": 99.97,
              "refseq_lower": 96.85,
              "refseq_upper": 96.85
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 1.2,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 1.2,
              "ml_upper": 1.24,
              "auto_lower": 1.2,
              "auto_upper": 1.24,
              "refseq_lower": 0.46,
              "refseq_upper": 0.46
            },
            {
              "metric": "N50",
              "lower": 68000.0,
              "upper": null,
              "final_lower": 68000.0,
              "final_upper": null,
              "warn_lower": 68000.0,
              "warn_upper": 68762.0,
              "source": "computed",
              "ml_lower": 68762.0,
              "ml_upper": 68762.0,
              "auto_lower": 68762.0,
              "auto_upper": 68762.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 86.0,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 86.0,
              "ml_upper": 88.0,
              "auto_lower": 86.0,
              "auto_upper": 88.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 203861.0,
              "warn_upper": 203869.0,
              "source": "computed",
              "ml_lower": 203861.0,
              "ml_upper": 203869.0,
              "auto_lower": 203861.0,
              "auto_upper": 203869.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 6,
            "refseq_count": 6,
            "final_count": 6,
            "filtered_out_count": 0,
            "pass_count": 0,
            "warn_count": 0,
            "fail_count": 42
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Rhizobium_leguminosarum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6700000.0,
              "upper": 8800000.0,
              "final_lower": 6700000.0,
              "final_upper": 8800000.0,
              "warn_lower": 6900000.0,
              "warn_upper": 7900000.0,
              "source": "computed",
              "ml_lower": 6739448.1,
              "ml_upper": 8799320.0,
              "auto_lower": 6739448.105,
              "auto_upper": 7991791.9399999995,
              "refseq_lower": 6885126.185,
              "refseq_upper": 8705562.094999999
            },
            {
              "metric": "GC_Content",
              "lower": 60.45,
              "upper": 61.18,
              "final_lower": 60.45,
              "final_upper": 61.18,
              "warn_lower": 60.52,
              "warn_upper": 60.96,
              "source": "computed",
              "ml_lower": 60.4571,
              "ml_upper": 61.1779,
              "auto_lower": 60.506031,
              "auto_upper": 60.9664535,
              "refseq_lower": 60.462405499999996,
              "refseq_upper": 61.1159755
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6500.0,
              "upper": 8900.0,
              "final_lower": 6500.0,
              "final_upper": 8900.0,
              "warn_lower": 6500.0,
              "warn_upper": 7800.0,
              "source": "computed",
              "ml_lower": 6531.38,
              "ml_upper": 8842.0,
              "auto_lower": 6531.375,
              "auto_upper": 7784.374999999999,
              "refseq_lower": 6654.885,
              "refseq_upper": 8686.885
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.78,
              "ml_upper": 100.0,
              "auto_lower": 99.96445,
              "auto_upper": 100.0,
              "refseq_lower": 96.07565,
              "refseq_upper": 99.84975
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.01,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 6.93,
              "auto_lower": 0.17895,
              "auto_upper": 3.03,
              "refseq_lower": 0.04510000000000001,
              "refseq_upper": 5.057999999999997
            },
            {
              "metric": "N50",
              "lower": 170000.0,
              "upper": null,
              "final_lower": 170000.0,
              "final_upper": null,
              "warn_lower": 180000.0,
              "warn_upper": 534092.66,
              "source": "computed",
              "ml_lower": 170917.74,
              "ml_upper": 534092.66,
              "auto_lower": 170917.735,
              "auto_upper": 534092.6599999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 250.0,
              "final_lower": null,
              "final_upper": 250.0,
              "warn_lower": 57.44,
              "warn_upper": 220.0,
              "source": "computed",
              "ml_lower": 57.44,
              "ml_upper": 244.99,
              "auto_lower": 57.445,
              "auto_upper": 244.98999999999987,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 439759.18,
              "warn_upper": 1576092.0,
              "source": "computed",
              "ml_lower": 439759.18,
              "ml_upper": 1576092.0,
              "auto_lower": 439759.175,
              "auto_upper": 1576092.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 90,
            "refseq_count": 82,
            "final_count": 90,
            "filtered_out_count": 0,
            "pass_count": 77,
            "warn_count": 21,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Salmonella_arizonae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5600000.0,
              "final_lower": 4400000.0,
              "final_upper": 5600000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 4800000.0,
              "source": "computed",
              "ml_lower": 4413848.34,
              "ml_upper": 5542871.0,
              "auto_lower": 4413848.34,
              "auto_upper": 4809811.17,
              "refseq_lower": 5542871.0,
              "refseq_upper": 5542871.0
            },
            {
              "metric": "GC_Content",
              "lower": 51.16,
              "upper": 51.57,
              "final_lower": 51.16,
              "final_upper": 51.57,
              "warn_lower": 51.25,
              "warn_upper": 51.53,
              "source": "computed",
              "ml_lower": 51.1634,
              "ml_upper": 51.5617,
              "auto_lower": 51.181850000000004,
              "auto_upper": 51.561661,
              "refseq_lower": 51.1634,
              "refseq_upper": 51.1634
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5500.0,
              "final_lower": 4100.0,
              "final_upper": 5500.0,
              "warn_lower": 4100.0,
              "warn_upper": 4600.0,
              "source": "computed",
              "ml_lower": 4125.35,
              "ml_upper": 5479.0,
              "auto_lower": 4125.35,
              "auto_upper": 4637.66,
              "refseq_lower": 5479.0,
              "refseq_upper": 5479.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.05,
              "refseq_upper": 97.05
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.28,
              "auto_lower": 0.0,
              "auto_upper": 0.2898999999999978,
              "refseq_lower": 6.28,
              "refseq_upper": 6.28
            },
            {
              "metric": "N50",
              "lower": 69000.0,
              "upper": null,
              "final_lower": 69000.0,
              "final_upper": null,
              "warn_lower": 91000.0,
              "warn_upper": 398355.89,
              "source": "computed",
              "ml_lower": 69050.01,
              "ml_upper": 398355.89,
              "auto_lower": 69050.01,
              "auto_upper": 398355.88999999955,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 61.0,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 61.0,
              "ml_upper": 199.66,
              "auto_lower": 61.0,
              "auto_upper": 199.65999999999985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 203040.11,
              "warn_upper": 1560084.0,
              "source": "computed",
              "ml_lower": 203040.11,
              "ml_upper": 1560084.0,
              "auto_lower": 203040.11,
              "auto_upper": 1560084.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1735,
            "refseq_count": 1,
            "final_count": 1735,
            "filtered_out_count": 0,
            "pass_count": 1626,
            "warn_count": 190,
            "fail_count": 86
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Salmonella_bongori": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 4900000.0,
              "final_lower": 4300000.0,
              "final_upper": 4900000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 4800000.0,
              "source": "computed",
              "ml_lower": 4304810.76,
              "ml_upper": 4861501.04,
              "auto_lower": 4304810.76,
              "auto_upper": 4861501.045,
              "refseq_lower": 4397026.645,
              "refseq_upper": 4759217.75
            },
            {
              "metric": "GC_Content",
              "lower": 51.04,
              "upper": 51.47,
              "final_lower": 51.04,
              "final_upper": 51.47,
              "warn_lower": 51.11,
              "warn_upper": 51.45,
              "source": "computed",
              "ml_lower": 51.0419,
              "ml_upper": 51.4696,
              "auto_lower": 51.041857,
              "auto_upper": 51.469566,
              "refseq_lower": 51.256206500000005,
              "refseq_upper": 51.394152999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4700.0,
              "final_lower": 3900.0,
              "final_upper": 4700.0,
              "warn_lower": 3900.0,
              "warn_upper": 4600.0,
              "source": "computed",
              "ml_lower": 3942.74,
              "ml_upper": 4650.04,
              "auto_lower": 3942.745,
              "auto_upper": 4650.04,
              "refseq_lower": 4154.18,
              "refseq_upper": 4619.54
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.26,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.29355000000001,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 1.05,
              "auto_lower": 0.03,
              "auto_upper": 0.6650999999999999,
              "refseq_lower": 0.71,
              "refseq_upper": 1.0434
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 40000.0,
              "warn_upper": 519529.26,
              "source": "computed",
              "ml_lower": 33371.38,
              "ml_upper": 519529.26,
              "auto_lower": 33371.385,
              "auto_upper": 519529.25999999983,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 270.0,
              "final_lower": null,
              "final_upper": 270.0,
              "warn_lower": 48.98,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 48.98,
              "ml_upper": 263.53,
              "auto_lower": 48.98,
              "auto_upper": 263.53,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 122448.88,
              "warn_upper": 1528609.46,
              "source": "computed",
              "ml_lower": 122448.88,
              "ml_upper": 1528609.46,
              "auto_lower": 122448.875,
              "auto_upper": 1528609.455,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 150,
            "refseq_count": 12,
            "final_count": 150,
            "filtered_out_count": 0,
            "pass_count": 139,
            "warn_count": 17,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Salmonella_enterica": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5900000.0,
              "final_lower": 4400000.0,
              "final_upper": 5900000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4484627.0,
              "ml_upper": 5868736.0,
              "auto_lower": 4516299.58,
              "auto_upper": 5146484.864999998,
              "refseq_lower": 4556006.065,
              "refseq_upper": 5376064.415
            },
            {
              "metric": "GC_Content",
              "lower": 51.12,
              "upper": 52.38,
              "final_lower": 51.12,
              "final_upper": 52.38,
              "warn_lower": 51.94,
              "warn_upper": 52.3,
              "source": "computed",
              "ml_lower": 51.1235,
              "ml_upper": 52.3776,
              "auto_lower": 51.8448,
              "auto_upper": 52.3357,
              "refseq_lower": 51.446341,
              "refseq_upper": 52.3440785
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 6000.0,
              "final_lower": 4100.0,
              "final_upper": 6000.0,
              "warn_lower": 4200.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 4197.0,
              "ml_upper": 5926.0,
              "auto_lower": 4197.0,
              "auto_upper": 4965.0,
              "refseq_lower": 4415.275,
              "refseq_upper": 5361.29
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.43,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.82565,
              "refseq_upper": 99.75
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 7.42,
              "auto_lower": 0.01,
              "auto_upper": 0.37,
              "refseq_lower": 0.29565,
              "refseq_upper": 5.48
            },
            {
              "metric": "N50",
              "lower": 64000.0,
              "upper": null,
              "final_lower": 64000.0,
              "final_upper": null,
              "warn_lower": 90000.0,
              "warn_upper": 728825.0,
              "source": "computed",
              "ml_lower": 64851.0,
              "ml_upper": 728825.0,
              "auto_lower": 64851.0,
              "auto_upper": 728825.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 190.0,
              "final_lower": null,
              "final_upper": 190.0,
              "warn_lower": 32.0,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 32.0,
              "ml_upper": 186.0,
              "auto_lower": 32.0,
              "auto_upper": 186.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 203949.88,
              "warn_upper": 1602083.0,
              "source": "computed",
              "ml_lower": 203949.88,
              "ml_upper": 1602083.0,
              "auto_lower": 203949.885,
              "auto_upper": 1602083.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 581630,
            "refseq_count": 1972,
            "final_count": 581630,
            "filtered_out_count": 0,
            "pass_count": 552037,
            "warn_count": 68499,
            "fail_count": 23251
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Serratia_bockelmannii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 5600000.0,
              "final_lower": 4900000.0,
              "final_upper": 5600000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4996239.18,
              "ml_upper": 5515074.02,
              "auto_lower": 4996239.175,
              "auto_upper": 5515074.025,
              "refseq_lower": 5135921.575,
              "refseq_upper": 5319086.675
            },
            {
              "metric": "GC_Content",
              "lower": 58.71,
              "upper": 59.69,
              "final_lower": 58.71,
              "final_upper": 59.69,
              "warn_lower": 58.92,
              "warn_upper": 59.61,
              "source": "computed",
              "ml_lower": 58.7165,
              "ml_upper": 59.6859,
              "auto_lower": 58.7165095,
              "auto_upper": 59.685863000000005,
              "refseq_lower": 59.1918225,
              "refseq_upper": 59.464887499999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 5200.0,
              "final_lower": 4500.0,
              "final_upper": 5200.0,
              "warn_lower": 4600.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 4575.85,
              "ml_upper": 5137.62,
              "auto_lower": 4575.85,
              "auto_upper": 5137.615,
              "refseq_lower": 4854.25,
              "refseq_upper": 5116.475
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.42,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.48175,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.19,
              "auto_lower": 0.013850000000000001,
              "auto_upper": 1.19,
              "refseq_lower": 0.36224999999999996,
              "refseq_upper": 0.7072499999999999
            },
            {
              "metric": "N50",
              "lower": 35000.0,
              "upper": null,
              "final_lower": 35000.0,
              "final_upper": null,
              "warn_lower": 92000.0,
              "warn_upper": 1425108.73,
              "source": "computed",
              "ml_lower": 35809.93,
              "ml_upper": 1425108.73,
              "auto_lower": 35809.93,
              "auto_upper": 1425108.7300000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 320.0,
              "final_lower": null,
              "final_upper": 320.0,
              "warn_lower": 24.0,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 24.0,
              "ml_upper": 311.53,
              "auto_lower": 24.0,
              "auto_upper": 311.5250000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 121181.59,
              "warn_upper": 2403859.57,
              "source": "computed",
              "ml_lower": 121181.59,
              "ml_upper": 2403859.57,
              "auto_lower": 121181.59,
              "auto_upper": 2403859.565000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 278,
            "refseq_count": 6,
            "final_count": 278,
            "filtered_out_count": 0,
            "pass_count": 253,
            "warn_count": 25,
            "fail_count": 22
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Serratia_marcescens": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4800000.0,
              "upper": 5900000.0,
              "final_lower": 4800000.0,
              "final_upper": 5900000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4883373.1,
              "ml_upper": 5896859.0,
              "auto_lower": 4883373.1,
              "auto_upper": 5546258.4799999995,
              "refseq_lower": 4947304.41,
              "refseq_upper": 5875905.06
            },
            {
              "metric": "GC_Content",
              "lower": 58.47,
              "upper": 60.22,
              "final_lower": 58.47,
              "final_upper": 60.22,
              "warn_lower": 59.46,
              "warn_upper": 60.18,
              "source": "computed",
              "ml_lower": 58.4741,
              "ml_upper": 60.219,
              "auto_lower": 59.395722,
              "auto_upper": 60.21905,
              "refseq_lower": 58.548305000000006,
              "refseq_upper": 60.147114
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 5800.0,
              "final_lower": 4500.0,
              "final_upper": 5800.0,
              "warn_lower": 4500.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 4502.26,
              "ml_upper": 5749.0,
              "auto_lower": 4502.26,
              "auto_upper": 5151.379999999999,
              "refseq_lower": 4713.28,
              "refseq_upper": 5732.51
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.72,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 91.70939999999999,
              "refseq_upper": 97.9911
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 8.86,
              "auto_lower": 0.0,
              "auto_upper": 0.41739999999999783,
              "refseq_lower": 1.3358,
              "refseq_upper": 7.987000000000001
            },
            {
              "metric": "N50",
              "lower": 69000.0,
              "upper": null,
              "final_lower": 69000.0,
              "final_upper": null,
              "warn_lower": 111000.0,
              "warn_upper": 3106961.64,
              "source": "computed",
              "ml_lower": 69457.8,
              "ml_upper": 3106961.64,
              "auto_lower": 69457.8,
              "auto_upper": 3106961.6399999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 23.0,
              "warn_upper": 150.0,
              "source": "computed",
              "ml_lower": 23.0,
              "ml_upper": 192.16,
              "auto_lower": 23.0,
              "auto_upper": 192.15999999999985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 202537.24,
              "warn_upper": 3106961.64,
              "source": "computed",
              "ml_lower": 202537.24,
              "ml_upper": 3106961.64,
              "auto_lower": 202537.24,
              "auto_upper": 3106961.6399999997,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1285,
            "refseq_count": 195,
            "final_count": 1285,
            "filtered_out_count": 0,
            "pass_count": 1213,
            "warn_count": 151,
            "fail_count": 64
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [
              "The Nov 2025 feedback survey flagged that the Completeness distribution for S. marcescens is lower than the rest of the genus \u2014 interpret the Completeness lower bound with that context."
            ],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Serratia_nematodiphila": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 5400000.0,
              "final_lower": 4900000.0,
              "final_upper": 5400000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4955452.4,
              "ml_upper": 5372929.5,
              "auto_lower": 4955452.4,
              "auto_upper": 5372929.5,
              "refseq_lower": 5256558.0,
              "refseq_upper": 5256558.0
            },
            {
              "metric": "GC_Content",
              "lower": 59.23,
              "upper": 59.84,
              "final_lower": 59.23,
              "final_upper": 59.84,
              "warn_lower": 59.39,
              "warn_upper": 59.82,
              "source": "computed",
              "ml_lower": 59.2306,
              "ml_upper": 59.8324,
              "auto_lower": 59.23059,
              "auto_upper": 59.83241,
              "refseq_lower": 59.531312,
              "refseq_upper": 59.533688000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4600.0,
              "upper": 5400.0,
              "final_lower": 4600.0,
              "final_upper": 5400.0,
              "warn_lower": 4600.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 4602.9,
              "ml_upper": 5336.3,
              "auto_lower": 4602.9,
              "auto_upper": 5336.3,
              "refseq_lower": 4999.03,
              "refseq_upper": 5004.97
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.78,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.7948,
              "refseq_upper": 99.7252
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.56,
              "auto_lower": 0.013000000000000001,
              "auto_upper": 0.5569999999999999,
              "refseq_lower": 0.5,
              "refseq_upper": 0.5
            },
            {
              "metric": "N50",
              "lower": 20000.0,
              "upper": null,
              "final_lower": 20000.0,
              "final_upper": null,
              "warn_lower": 28000.0,
              "warn_upper": 1287990.8,
              "source": "computed",
              "ml_lower": 20041.0,
              "ml_upper": 1287990.8,
              "auto_lower": 20041.0,
              "auto_upper": 1287990.7999999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 560.0,
              "final_lower": null,
              "final_upper": 560.0,
              "warn_lower": 27.3,
              "warn_upper": 440.0,
              "source": "computed",
              "ml_lower": 27.3,
              "ml_upper": 555.9,
              "auto_lower": 27.3,
              "auto_upper": 555.8999999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 92936.8,
              "warn_upper": 2069951.7,
              "source": "computed",
              "ml_lower": 92936.8,
              "ml_upper": 2069951.7,
              "auto_lower": 92936.8,
              "auto_upper": 2069951.7,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 261,
            "refseq_count": 2,
            "final_count": 261,
            "filtered_out_count": 0,
            "pass_count": 248,
            "warn_count": 19,
            "fail_count": 27
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Serratia_nevei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6000000.0,
              "final_lower": 4900000.0,
              "final_upper": 6000000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5900000.0,
              "source": "computed",
              "ml_lower": 4932138.28,
              "ml_upper": 5979326.4,
              "auto_lower": 4932138.275,
              "auto_upper": 5979326.4,
              "refseq_lower": 5318269.335,
              "refseq_upper": 5887278.885
            },
            {
              "metric": "GC_Content",
              "lower": 58.23,
              "upper": 60.1,
              "final_lower": 58.23,
              "final_upper": 60.1,
              "warn_lower": 58.41,
              "warn_upper": 59.95,
              "source": "computed",
              "ml_lower": 58.2393,
              "ml_upper": 60.0992,
              "auto_lower": 58.2392675,
              "auto_upper": 60.0991925,
              "refseq_lower": 58.47982,
              "refseq_upper": 60.0419125
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 5900.0,
              "final_lower": 4500.0,
              "final_upper": 5900.0,
              "warn_lower": 4600.0,
              "warn_upper": 5700.0,
              "source": "computed",
              "ml_lower": 4581.85,
              "ml_upper": 5817.0,
              "auto_lower": 4581.85,
              "auto_upper": 5728.725,
              "refseq_lower": 5099.09,
              "refseq_upper": 5811.375
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.49,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.49135,
              "refseq_upper": 99.99505
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.09,
              "auto_lower": 0.0,
              "auto_upper": 0.79,
              "refseq_lower": 0.32630000000000003,
              "refseq_upper": 2.06975
            },
            {
              "metric": "N50",
              "lower": 50000.0,
              "upper": null,
              "final_lower": 50000.0,
              "final_upper": null,
              "warn_lower": 62000.0,
              "warn_upper": 684235.35,
              "source": "computed",
              "ml_lower": 50865.42,
              "ml_upper": 684235.35,
              "auto_lower": 50865.425,
              "auto_upper": 684235.3500000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 420.0,
              "final_lower": null,
              "final_upper": 420.0,
              "warn_lower": 35.0,
              "warn_upper": 370.0,
              "source": "computed",
              "ml_lower": 35.0,
              "ml_upper": 419.75,
              "auto_lower": 35.0,
              "auto_upper": 419.75000000000045,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 157302.17,
              "warn_upper": 1965476.1,
              "source": "computed",
              "ml_lower": 157302.17,
              "ml_upper": 1965476.1,
              "auto_lower": 157302.175,
              "auto_upper": 1965476.1000000022,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 886,
            "refseq_count": 10,
            "final_count": 886,
            "filtered_out_count": 0,
            "pass_count": 817,
            "warn_count": 88,
            "fail_count": 51
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [
              "The N50 versus total length distribution for the reference dataset shows patchiness, which may indicate underlying heterogeneity in the included sequences (different assembly strategies, sub-clades, etc.). Thresholds for this species may be less reliable than for species with cleaner reference distributions."
            ],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Serratia_sarumannii": {
      "schemes": {
        "REFSEQ-QC-v1": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5000000.0,
              "upper": 5400000.0,
              "final_lower": 5000000.0,
              "final_upper": 5400000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 5055011.0,
              "ml_upper": 5339266.0,
              "auto_lower": 5055011.0,
              "auto_upper": 5339266.0,
              "refseq_lower": 5088864.0,
              "refseq_upper": 5383144.0
            },
            {
              "metric": "GC_Content",
              "lower": 59.64,
              "upper": 60.08,
              "final_lower": 59.64,
              "final_upper": 60.08,
              "warn_lower": 59.64,
              "warn_upper": 60.08,
              "source": "computed",
              "ml_lower": 59.6436,
              "ml_upper": 60.0703,
              "auto_lower": 59.64374384172092,
              "auto_upper": 60.07031438705079,
              "refseq_lower": 59.6084,
              "refseq_upper": 60.027
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4600.0,
              "upper": 5300.0,
              "final_lower": 4600.0,
              "final_upper": 5300.0,
              "warn_lower": 4600.0,
              "warn_upper": 5200.0,
              "source": "computed",
              "ml_lower": 4609.0,
              "ml_upper": 5263.0,
              "auto_lower": 4609.0,
              "auto_upper": 5235.01,
              "refseq_lower": 4822.085,
              "refseq_upper": 5186.65
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 97.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.87,
              "ml_upper": 100.0,
              "auto_lower": 96.24170000000001,
              "auto_upper": 100.0,
              "refseq_lower": 85.5,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.54,
              "auto_lower": 0.01,
              "auto_upper": 1.4050000000000002,
              "refseq_lower": 0.18,
              "refseq_upper": 1.1
            },
            {
              "metric": "N50",
              "lower": 191000.0,
              "upper": null,
              "final_lower": 191000.0,
              "final_upper": null,
              "warn_lower": 263000.0,
              "warn_upper": 1372682.0,
              "source": "computed",
              "ml_lower": 191170.0,
              "ml_upper": 1372682.0,
              "auto_lower": 205646.41,
              "auto_upper": 1372682.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 50.0,
              "final_lower": null,
              "final_upper": 50.0,
              "warn_lower": 22.0,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 22.0,
              "ml_upper": 48.0,
              "auto_lower": 22.0,
              "auto_upper": 47.370000000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 534075.0,
              "warn_upper": 2122422.0,
              "source": "computed",
              "ml_lower": 534075.0,
              "ml_upper": 2122422.0,
              "auto_lower": 564538.29,
              "auto_upper": 2122422.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 19,
            "refseq_count": 19,
            "final_count": 19,
            "filtered_out_count": 0
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Serratia_ureilytica": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5500000.0,
              "final_lower": 4600000.0,
              "final_upper": 5500000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4602415.0,
              "ml_upper": 5444664.0,
              "auto_lower": 4987949.77,
              "auto_upper": 5396501.164999999,
              "refseq_lower": 4618808.8,
              "refseq_upper": 5438810.04
            },
            {
              "metric": "GC_Content",
              "lower": 59.11,
              "upper": 59.78,
              "final_lower": 59.11,
              "final_upper": 59.78,
              "warn_lower": 59.25,
              "warn_upper": 59.77,
              "source": "computed",
              "ml_lower": 59.1198,
              "ml_upper": 59.7793,
              "auto_lower": 59.1879335,
              "auto_upper": 59.779329,
              "refseq_lower": 59.133924,
              "refseq_upper": 59.755444000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4500.0,
              "upper": 5300.0,
              "final_lower": 4500.0,
              "final_upper": 5300.0,
              "warn_lower": 4600.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 4582.42,
              "ml_upper": 5265.0,
              "auto_lower": 4582.42,
              "auto_upper": 5050.494999999999,
              "refseq_lower": 4614.6,
              "refseq_upper": 5255.5199999999995
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.68,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.7064,
              "refseq_upper": 99.83
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.41,
              "auto_lower": 0.0,
              "auto_upper": 0.32,
              "refseq_lower": 0.1121,
              "refseq_upper": 1.40265
            },
            {
              "metric": "N50",
              "lower": 99000.0,
              "upper": null,
              "final_lower": 99000.0,
              "final_upper": null,
              "warn_lower": 141000.0,
              "warn_upper": 3127715.0,
              "source": "computed",
              "ml_lower": 99745.2,
              "ml_upper": 3127715.0,
              "auto_lower": 99745.205,
              "auto_upper": 3127714.9999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 22.86,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 22.86,
              "ml_upper": 141.88,
              "auto_lower": 22.855,
              "auto_upper": 141.88499999999976,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 247105.1,
              "warn_upper": 3127715.0,
              "source": "computed",
              "ml_lower": 247105.1,
              "ml_upper": 3127715.0,
              "auto_lower": 247105.105,
              "auto_upper": 3127714.9999999995,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 372,
            "refseq_count": 25,
            "final_count": 372,
            "filtered_out_count": 0,
            "pass_count": 382,
            "warn_count": 41,
            "fail_count": 31
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [
              "The N50 versus total length distribution for the reference dataset shows a bimodal pattern, suggesting taxonomic heterogeneity or differences in assembly strategies across the included genomes (Nov 2025 feedback survey). N50 thresholds may be less reliable than for species with unimodal reference distributions."
            ],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Sinorhizobium_medicae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6400000.0,
              "upper": 7800000.0,
              "final_lower": 6400000.0,
              "final_upper": 7800000.0,
              "warn_lower": 6400000.0,
              "warn_upper": 7100000.0,
              "source": "computed",
              "ml_lower": 6425204.22,
              "ml_upper": 7768883.0,
              "auto_lower": 6425204.22,
              "auto_upper": 7109957.885000001,
              "refseq_lower": 6747949.345,
              "refseq_upper": 7767020.425
            },
            {
              "metric": "GC_Content",
              "lower": 60.95,
              "upper": 61.27,
              "final_lower": 60.95,
              "final_upper": 61.27,
              "warn_lower": 61.02,
              "warn_upper": 61.25,
              "source": "computed",
              "ml_lower": 60.9512,
              "ml_upper": 61.2694,
              "auto_lower": 60.970820499999995,
              "auto_upper": 61.2693595,
              "refseq_lower": 60.9523935,
              "refseq_upper": 61.212548
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 6100.0,
              "upper": 7700.0,
              "final_lower": 6100.0,
              "final_upper": 7700.0,
              "warn_lower": 6200.0,
              "warn_upper": 7000.0,
              "source": "computed",
              "ml_lower": 6191.96,
              "ml_upper": 7652.0,
              "auto_lower": 6191.96,
              "auto_upper": 7151.34,
              "refseq_lower": 6483.805,
              "refseq_upper": 7650.735
            },
            {
              "metric": "Completeness_Specific",
              "lower": 87.0,
              "upper": null,
              "final_lower": 87.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 87.99,
              "ml_upper": 100.0,
              "auto_lower": 99.96,
              "auto_upper": 100.0,
              "refseq_lower": 88.1011,
              "refseq_upper": 97.76315
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.03,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 5.36,
              "auto_lower": 0.0283,
              "auto_upper": 1.3459500000000006,
              "refseq_lower": 1.03,
              "refseq_upper": 5.26925
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 251991.59,
              "source": "computed",
              "ml_lower": 31580.79,
              "ml_upper": 251991.59,
              "auto_lower": 31580.79,
              "auto_upper": 251991.58500000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 490.0,
              "final_lower": null,
              "final_upper": 490.0,
              "warn_lower": 91.32,
              "warn_upper": 470.0,
              "source": "computed",
              "ml_lower": 91.32,
              "ml_upper": 484.17,
              "auto_lower": 91.32,
              "auto_upper": 484.17,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 166665.46,
              "warn_upper": 923973.95,
              "source": "computed",
              "ml_lower": 166665.46,
              "ml_upper": 923973.95,
              "auto_lower": 166665.46,
              "auto_upper": 923973.9500000007,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 184,
            "refseq_count": 12,
            "final_count": 184,
            "filtered_out_count": 0,
            "pass_count": 167,
            "warn_count": 18,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Sinorhizobium_meliloti": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6100000.0,
              "upper": 8100000.0,
              "final_lower": 6100000.0,
              "final_upper": 8100000.0,
              "warn_lower": 6500000.0,
              "warn_upper": 7400000.0,
              "source": "computed",
              "ml_lower": 6140999.0,
              "ml_upper": 8078272.0,
              "auto_lower": 6450896.72,
              "auto_upper": 7494793.519999999,
              "refseq_lower": 6243785.39,
              "refseq_upper": 8051479.01
            },
            {
              "metric": "GC_Content",
              "lower": 61.71,
              "upper": 62.41,
              "final_lower": 61.71,
              "final_upper": 62.41,
              "warn_lower": 61.87,
              "warn_upper": 62.25,
              "source": "computed",
              "ml_lower": 61.7102,
              "ml_upper": 62.4007,
              "auto_lower": 61.835457,
              "auto_upper": 62.275464,
              "refseq_lower": 61.744114,
              "refseq_upper": 62.391927
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5800.0,
              "upper": 8000.0,
              "final_lower": 5800.0,
              "final_upper": 8000.0,
              "warn_lower": 6100.0,
              "warn_upper": 7400.0,
              "source": "computed",
              "ml_lower": 5869.0,
              "ml_upper": 7914.0,
              "auto_lower": 6053.06,
              "auto_upper": 7497.089999999998,
              "refseq_lower": 5975.02,
              "refseq_upper": 7875.5599999999995
            },
            {
              "metric": "Completeness_Specific",
              "lower": 90.0,
              "upper": null,
              "final_lower": 90.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 90.06,
              "ml_upper": 100.0,
              "auto_lower": 99.8753,
              "auto_upper": 100.0,
              "refseq_lower": 90.6397,
              "refseq_upper": 99.55
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 7.66,
              "auto_lower": 0.0,
              "auto_upper": 1.7634999999999985,
              "refseq_lower": 0.4024,
              "refseq_upper": 6.088299999999989
            },
            {
              "metric": "N50",
              "lower": 36000.0,
              "upper": null,
              "final_lower": 36000.0,
              "final_upper": null,
              "warn_lower": 43000.0,
              "warn_upper": 278500.5,
              "source": "computed",
              "ml_lower": 36547.37,
              "ml_upper": 278500.5,
              "auto_lower": 36547.37,
              "auto_upper": 278500.4999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 490.0,
              "final_lower": null,
              "final_upper": 490.0,
              "warn_lower": 81.36,
              "warn_upper": 420.0,
              "source": "computed",
              "ml_lower": 81.36,
              "ml_upper": 482.41,
              "auto_lower": 81.36,
              "auto_upper": 482.4099999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 147217.41,
              "warn_upper": 910063.35,
              "source": "computed",
              "ml_lower": 147217.41,
              "ml_upper": 910063.35,
              "auto_lower": 147217.41,
              "auto_upper": 910063.3499999989,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 507,
            "refseq_count": 63,
            "final_count": 507,
            "filtered_out_count": 0,
            "pass_count": 473,
            "warn_count": 56,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_argenteus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 2900000.0,
              "final_lower": 2600000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2600000.0,
              "warn_upper": 2900000.0,
              "source": "computed",
              "ml_lower": 2656468.02,
              "ml_upper": 2872664.0,
              "auto_lower": 2656468.02,
              "auto_upper": 2868496.8850000002,
              "refseq_lower": 2698609.52,
              "refseq_upper": 2869785.28
            },
            {
              "metric": "GC_Content",
              "lower": 32.18,
              "upper": 32.49,
              "final_lower": 32.18,
              "final_upper": 32.49,
              "warn_lower": 32.19,
              "warn_upper": 32.34,
              "source": "computed",
              "ml_lower": 32.1825,
              "ml_upper": 32.4896,
              "auto_lower": 32.182544,
              "auto_upper": 32.372837,
              "refseq_lower": 32.330776,
              "refseq_upper": 32.487112
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2400.0,
              "upper": 2900.0,
              "final_lower": 2400.0,
              "final_upper": 2900.0,
              "warn_lower": 2400.0,
              "warn_upper": 2700.0,
              "source": "computed",
              "ml_lower": 2423.0,
              "ml_upper": 2808.0,
              "auto_lower": 2423.0,
              "auto_upper": 2758.5600000000004,
              "refseq_lower": 2584.08,
              "refseq_upper": 2804.8
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.52,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 98.5312,
              "refseq_upper": 99.22
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.06,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.06,
              "ml_upper": 0.75,
              "auto_lower": 0.06,
              "auto_upper": 0.746700000000003,
              "refseq_lower": 0.08,
              "refseq_upper": 0.4664
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 59000.0,
              "warn_upper": 932448.15,
              "source": "computed",
              "ml_lower": 31451.57,
              "ml_upper": 932448.15,
              "auto_lower": 31451.57,
              "auto_upper": 932448.1450000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 16.06,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 16.06,
              "ml_upper": 227.73,
              "auto_lower": 16.055,
              "auto_upper": 227.72500000000025,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 101312.7,
              "warn_upper": 1396449.01,
              "source": "computed",
              "ml_lower": 101312.7,
              "ml_upper": 1396449.01,
              "auto_lower": 101312.705,
              "auto_upper": 1396449.01,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 612,
            "refseq_count": 17,
            "final_count": 612,
            "filtered_out_count": 0,
            "pass_count": 587,
            "warn_count": 37,
            "fail_count": 47
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_aureus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 3300000.0,
              "final_lower": 2600000.0,
              "final_upper": 3300000.0,
              "warn_lower": 2600000.0,
              "warn_upper": 3000000.0,
              "source": "computed",
              "ml_lower": 2661557.0,
              "ml_upper": 3218685.0,
              "auto_lower": 2661557.0,
              "auto_upper": 3001910.91,
              "refseq_lower": 2695921.77,
              "refseq_upper": 3096060.78
            },
            {
              "metric": "GC_Content",
              "lower": 32.58,
              "upper": 33.1,
              "final_lower": 32.58,
              "final_upper": 33.1,
              "warn_lower": 32.6,
              "warn_upper": 32.86,
              "source": "computed",
              "ml_lower": 32.5845,
              "ml_upper": 33.0933,
              "auto_lower": 32.5845,
              "auto_upper": 32.8934,
              "refseq_lower": 32.702818,
              "refseq_upper": 33.0692935
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2400.0,
              "upper": 3400.0,
              "final_lower": 2400.0,
              "final_upper": 3400.0,
              "warn_lower": 2400.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2437.0,
              "ml_upper": 3331.0,
              "auto_lower": 2437.0,
              "auto_upper": 2879.0,
              "refseq_lower": 2645.0,
              "refseq_upper": 3161.41
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.5,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.9718,
              "refseq_upper": 98.9
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 3.33,
              "auto_lower": 0.03,
              "auto_upper": 1.04,
              "refseq_lower": 0.3,
              "refseq_upper": 2.0040999999999984
            },
            {
              "metric": "N50",
              "lower": 28000.0,
              "upper": null,
              "final_lower": 28000.0,
              "final_upper": null,
              "warn_lower": 45000.0,
              "warn_upper": 738989.17,
              "source": "computed",
              "ml_lower": 28675.21,
              "ml_upper": 738989.17,
              "auto_lower": 28675.21,
              "auto_upper": 738989.17,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 260.0,
              "final_lower": null,
              "final_upper": 260.0,
              "warn_lower": 23.0,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 23.0,
              "ml_upper": 252.0,
              "auto_lower": 23.0,
              "auto_upper": 252.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 94820.29,
              "warn_upper": 1223964.47,
              "source": "computed",
              "ml_lower": 94820.29,
              "ml_upper": 1223964.47,
              "auto_lower": 94820.29,
              "auto_upper": 1223964.4650000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 110904,
            "refseq_count": 1860,
            "final_count": 110904,
            "filtered_out_count": 0,
            "pass_count": 107176,
            "warn_count": 9002,
            "fail_count": 4938
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_capitis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2300000.0,
              "upper": 2800000.0,
              "final_lower": 2300000.0,
              "final_upper": 2800000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2363587.0,
              "ml_upper": 2701315.0,
              "auto_lower": 2376235.67,
              "auto_upper": 2653054.255,
              "refseq_lower": 2378115.43,
              "refseq_upper": 2696089.15
            },
            {
              "metric": "GC_Content",
              "lower": 32.66,
              "upper": 33.06,
              "final_lower": 32.66,
              "final_upper": 33.06,
              "warn_lower": 32.69,
              "warn_upper": 32.88,
              "source": "computed",
              "ml_lower": 32.667,
              "ml_upper": 33.0549,
              "auto_lower": 32.666984,
              "auto_upper": 32.9104935,
              "refseq_lower": 32.788815,
              "refseq_upper": 33.053115000000005
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2200.0,
              "upper": 2700.0,
              "final_lower": 2200.0,
              "final_upper": 2700.0,
              "warn_lower": 2200.0,
              "warn_upper": 2600.0,
              "source": "computed",
              "ml_lower": 2254.0,
              "ml_upper": 2671.0,
              "auto_lower": 2254.0,
              "auto_upper": 2593.645,
              "refseq_lower": 2316.02,
              "refseq_upper": 2667.22
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.13,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 97.2329,
              "refseq_upper": 99.63
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.85,
              "auto_lower": 0.01,
              "auto_upper": 0.8528999999999997,
              "refseq_lower": 0.06,
              "refseq_upper": 0.64
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 55000.0,
              "warn_upper": 850498.85,
              "source": "computed",
              "ml_lower": 31039.86,
              "ml_upper": 850498.85,
              "auto_lower": 31039.855,
              "auto_upper": 850498.85,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 190.0,
              "final_lower": null,
              "final_upper": 190.0,
              "warn_lower": 25.0,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 25.0,
              "ml_upper": 188.35,
              "auto_lower": 25.0,
              "auto_upper": 188.34999999999945,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 94778.72,
              "warn_upper": 932860.89,
              "source": "computed",
              "ml_lower": 94778.72,
              "ml_upper": 932860.89,
              "auto_lower": 94778.715,
              "auto_upper": 932860.89,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1472,
            "refseq_count": 43,
            "final_count": 1472,
            "filtered_out_count": 0,
            "pass_count": 1387,
            "warn_count": 157,
            "fail_count": 69
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_chromogenes": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 2500000.0,
              "final_lower": 2200000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2222318.72,
              "ml_upper": 2478658.0,
              "auto_lower": 2222318.725,
              "auto_upper": 2400171.41,
              "refseq_lower": 2257203.19,
              "refseq_upper": 2474033.38
            },
            {
              "metric": "GC_Content",
              "lower": 36.43,
              "upper": 36.9,
              "final_lower": 36.43,
              "final_upper": 36.9,
              "warn_lower": 36.48,
              "warn_upper": 36.83,
              "source": "computed",
              "ml_lower": 36.4355,
              "ml_upper": 36.8958,
              "auto_lower": 36.435457,
              "auto_upper": 36.849056499999996,
              "refseq_lower": 36.635325,
              "refseq_upper": 36.8946945
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 2500.0,
              "final_lower": 2100.0,
              "final_upper": 2500.0,
              "warn_lower": 2100.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2123.5,
              "ml_upper": 2472.0,
              "auto_lower": 2123.495,
              "auto_upper": 2361.01,
              "refseq_lower": 2229.035,
              "refseq_upper": 2469.25
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.99,
              "source": "computed",
              "ml_lower": 97.32,
              "ml_upper": 99.99,
              "auto_lower": 99.82,
              "auto_upper": 99.98505,
              "refseq_lower": 97.34309999999999,
              "refseq_upper": 98.83415
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.98,
              "auto_lower": 0.0,
              "auto_upper": 0.5252499999999998,
              "refseq_lower": 0.7474999999999999,
              "refseq_upper": 1.97285
            },
            {
              "metric": "N50",
              "lower": 101000.0,
              "upper": null,
              "final_lower": 101000.0,
              "final_upper": null,
              "warn_lower": 142000.0,
              "warn_upper": 1261914.44,
              "source": "computed",
              "ml_lower": 101152.06,
              "ml_upper": 1261914.44,
              "auto_lower": 101152.05500000001,
              "auto_upper": 1261914.445,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 15.5,
              "warn_upper": 70.0,
              "source": "computed",
              "ml_lower": 15.5,
              "ml_upper": 89.0,
              "auto_lower": 15.495000000000001,
              "auto_upper": 89.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 239516.74,
              "warn_upper": 1261914.44,
              "source": "computed",
              "ml_lower": 239516.74,
              "ml_upper": 1261914.44,
              "auto_lower": 239516.73500000002,
              "auto_upper": 1261914.445,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 300,
            "refseq_count": 12,
            "final_count": 300,
            "filtered_out_count": 0,
            "pass_count": 280,
            "warn_count": 29,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_coagulans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2200000.0,
              "upper": 2600000.0,
              "final_lower": 2200000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2200000.0,
              "warn_upper": 2600000.0,
              "source": "computed",
              "ml_lower": 2200250.6,
              "ml_upper": 2536387.08,
              "auto_lower": 2200250.6,
              "auto_upper": 2536387.075,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 35.69,
              "upper": 35.89,
              "final_lower": 35.69,
              "final_upper": 35.89,
              "warn_lower": 35.69,
              "warn_upper": 35.87,
              "source": "computed",
              "ml_lower": 35.69,
              "ml_upper": 35.89,
              "auto_lower": 35.6905825,
              "auto_upper": 35.894529999999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2500.0,
              "final_lower": 2000.0,
              "final_upper": 2500.0,
              "warn_lower": 2000.0,
              "warn_upper": 2400.0,
              "source": "computed",
              "ml_lower": 2051.12,
              "ml_upper": 2417.08,
              "auto_lower": 2051.125,
              "auto_upper": 2417.0750000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.97,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.12,
              "auto_lower": 0.0,
              "auto_upper": 0.12,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 71000.0,
              "upper": null,
              "final_lower": 71000.0,
              "final_upper": null,
              "warn_lower": 82000.0,
              "warn_upper": 470853.95,
              "source": "computed",
              "ml_lower": 71873.68,
              "ml_upper": 470853.95,
              "auto_lower": 71873.675,
              "auto_upper": 470853.95000000024,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 19.42,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 19.42,
              "ml_upper": 116.23,
              "auto_lower": 19.425,
              "auto_upper": 116.22500000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 162966.3,
              "warn_upper": 1242948.15,
              "source": "computed",
              "ml_lower": 162966.3,
              "ml_upper": 1242948.15,
              "auto_lower": 162966.3,
              "auto_upper": 1242948.1500000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 86,
            "refseq_count": 0,
            "final_count": 86,
            "filtered_out_count": 0,
            "pass_count": 87,
            "warn_count": 6,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_epidermidis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2300000.0,
              "upper": 2900000.0,
              "final_lower": 2300000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2800000.0,
              "source": "computed",
              "ml_lower": 2323375.0,
              "ml_upper": 2854742.0,
              "auto_lower": 2369019.44,
              "auto_upper": 2781912.3599999994,
              "refseq_lower": 2402223.96,
              "refseq_upper": 2827232.6
            },
            {
              "metric": "GC_Content",
              "lower": 31.74,
              "upper": 32.36,
              "final_lower": 31.74,
              "final_upper": 32.36,
              "warn_lower": 31.77,
              "warn_upper": 32.24,
              "source": "computed",
              "ml_lower": 31.7461,
              "ml_upper": 32.3545,
              "auto_lower": 31.746066,
              "auto_upper": 32.354524,
              "refseq_lower": 31.874156,
              "refseq_upper": 32.304748000000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 2900.0,
              "final_lower": 2100.0,
              "final_upper": 2900.0,
              "warn_lower": 2200.0,
              "warn_upper": 2700.0,
              "source": "computed",
              "ml_lower": 2190.44,
              "ml_upper": 2808.0,
              "auto_lower": 2190.44,
              "auto_upper": 2747.7799999999997,
              "refseq_lower": 2273.8,
              "refseq_upper": 2795.8
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.23,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 96.46600000000001,
              "refseq_upper": 99.76
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.32,
              "auto_lower": 0.02,
              "auto_upper": 1.32,
              "refseq_lower": 0.01,
              "refseq_upper": 0.9165999999999996
            },
            {
              "metric": "N50",
              "lower": 13000.0,
              "upper": null,
              "final_lower": 13000.0,
              "final_upper": null,
              "warn_lower": 22000.0,
              "warn_upper": 287429.18,
              "source": "computed",
              "ml_lower": 13216.82,
              "ml_upper": 287429.18,
              "auto_lower": 13216.82,
              "auto_upper": 287429.17999999895,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 380.0,
              "final_lower": null,
              "final_upper": 380.0,
              "warn_lower": 41.0,
              "warn_upper": 280.0,
              "source": "computed",
              "ml_lower": 41.0,
              "ml_upper": 378.0,
              "auto_lower": 41.0,
              "auto_upper": 378.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 52951.0,
              "warn_upper": 713238.9,
              "source": "computed",
              "ml_lower": 52951.0,
              "ml_upper": 713238.9,
              "auto_lower": 52951.0,
              "auto_upper": 713238.8999999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 6045,
            "refseq_count": 265,
            "final_count": 6045,
            "filtered_out_count": 0,
            "pass_count": 5431,
            "warn_count": 628,
            "fail_count": 332
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_equorum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2600000.0,
              "upper": 3000000.0,
              "final_lower": 2600000.0,
              "final_upper": 3000000.0,
              "warn_lower": 2600000.0,
              "warn_upper": 2900000.0,
              "source": "computed",
              "ml_lower": 2674612.72,
              "ml_upper": 2992544.0,
              "auto_lower": 2674612.72,
              "auto_upper": 2899111.32,
              "refseq_lower": 2726905.875,
              "refseq_upper": 2987519.875
            },
            {
              "metric": "GC_Content",
              "lower": 32.84,
              "upper": 33.24,
              "final_lower": 32.84,
              "final_upper": 33.24,
              "warn_lower": 32.87,
              "warn_upper": 33.12,
              "source": "computed",
              "ml_lower": 32.8438,
              "ml_upper": 33.233,
              "auto_lower": 32.843776,
              "auto_upper": 33.130148,
              "refseq_lower": 32.872225,
              "refseq_upper": 33.225537499999994
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2500.0,
              "upper": 3000.0,
              "final_lower": 2500.0,
              "final_upper": 3000.0,
              "warn_lower": 2500.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2538.12,
              "ml_upper": 2956.0,
              "auto_lower": 2538.12,
              "auto_upper": 2816.0,
              "refseq_lower": 2641.125,
              "refseq_upper": 2955.5
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.86,
              "ml_upper": 100.0,
              "auto_lower": 99.9652,
              "auto_upper": 100.0,
              "refseq_lower": 96.87875,
              "refseq_upper": 99.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 1.53,
              "auto_lower": 0.02,
              "auto_upper": 0.25920000000000015,
              "refseq_lower": 0.09,
              "refseq_upper": 1.5050000000000001
            },
            {
              "metric": "N50",
              "lower": 239000.0,
              "upper": null,
              "final_lower": 239000.0,
              "final_upper": null,
              "warn_lower": 329000.0,
              "warn_upper": 808486.0,
              "source": "computed",
              "ml_lower": 239791.36,
              "ml_upper": 808486.0,
              "auto_lower": 239791.36,
              "auto_upper": 808486.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 60.0,
              "final_lower": null,
              "final_upper": 60.0,
              "warn_lower": 18.52,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 18.52,
              "ml_upper": 54.44,
              "auto_lower": 18.52,
              "auto_upper": 54.44000000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 418607.84,
              "warn_upper": 1251325.48,
              "source": "computed",
              "ml_lower": 418607.84,
              "ml_upper": 1251325.48,
              "auto_lower": 418607.84,
              "auto_upper": 1251325.48,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 105,
            "refseq_count": 26,
            "final_count": 105,
            "filtered_out_count": 0,
            "pass_count": 103,
            "warn_count": 11,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_haemolyticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2300000.0,
              "upper": 2700000.0,
              "final_lower": 2300000.0,
              "final_upper": 2700000.0,
              "warn_lower": 2300000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2322835.0,
              "ml_upper": 2699292.0,
              "auto_lower": 2346981.46,
              "auto_upper": 2660840.24,
              "refseq_lower": 2323156.825,
              "refseq_upper": 2699277.65
            },
            {
              "metric": "GC_Content",
              "lower": 32.51,
              "upper": 33.07,
              "final_lower": 32.51,
              "final_upper": 33.07,
              "warn_lower": 32.56,
              "warn_upper": 32.81,
              "source": "computed",
              "ml_lower": 32.5145,
              "ml_upper": 33.0648,
              "auto_lower": 32.514533,
              "auto_upper": 32.864194,
              "refseq_lower": 32.6847575,
              "refseq_upper": 33.06445
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2300.0,
              "upper": 2800.0,
              "final_lower": 2300.0,
              "final_upper": 2800.0,
              "warn_lower": 2300.0,
              "warn_upper": 2700.0,
              "source": "computed",
              "ml_lower": 2308.37,
              "ml_upper": 2739.0,
              "auto_lower": 2308.37,
              "auto_upper": 2726.6800000000003,
              "refseq_lower": 2315.0,
              "refseq_upper": 2733.925
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.98,
              "ml_upper": 100.0,
              "auto_lower": 99.94,
              "auto_upper": 100.0,
              "refseq_lower": 96.0395,
              "refseq_upper": 99.75225
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.4,
              "auto_lower": 0.0,
              "auto_upper": 1.396300000000001,
              "refseq_lower": 0.0617,
              "refseq_upper": 0.9680999999999998
            },
            {
              "metric": "N50",
              "lower": 19000.0,
              "upper": null,
              "final_lower": 19000.0,
              "final_upper": null,
              "warn_lower": 32000.0,
              "warn_upper": 137590.67,
              "source": "computed",
              "ml_lower": 19100.42,
              "ml_upper": 137590.67,
              "auto_lower": 19100.42,
              "auto_upper": 137590.6700000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 62.0,
              "warn_upper": 220.0,
              "source": "computed",
              "ml_lower": 62.0,
              "ml_upper": 322.68,
              "auto_lower": 62.0,
              "auto_upper": 322.6800000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 80539.87,
              "warn_upper": 392848.93,
              "source": "computed",
              "ml_lower": 80539.87,
              "ml_upper": 392848.93,
              "auto_lower": 80539.87,
              "auto_upper": 392848.9300000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1559,
            "refseq_count": 36,
            "final_count": 1559,
            "filtered_out_count": 0,
            "pass_count": 1456,
            "warn_count": 110,
            "fail_count": 106
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_hominis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2500000.0,
              "final_lower": 2100000.0,
              "final_upper": 2500000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 2117467.63,
              "ml_upper": 2454595.46,
              "auto_lower": 2117467.63,
              "auto_upper": 2454595.455,
              "refseq_lower": 2226885.08,
              "refseq_upper": 2446733.36
            },
            {
              "metric": "GC_Content",
              "lower": 31.18,
              "upper": 32.81,
              "final_lower": 31.18,
              "final_upper": 32.81,
              "warn_lower": 31.22,
              "warn_upper": 32.08,
              "source": "computed",
              "ml_lower": 31.1879,
              "ml_upper": 32.8024,
              "auto_lower": 31.1879035,
              "auto_upper": 32.80244750000001,
              "refseq_lower": 31.367896000000002,
              "refseq_upper": 31.778388
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2600.0,
              "final_lower": 2000.0,
              "final_upper": 2600.0,
              "warn_lower": 2000.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 2063.12,
              "ml_upper": 2563.17,
              "auto_lower": 2063.125,
              "auto_upper": 2563.17,
              "refseq_lower": 2207.12,
              "refseq_upper": 2484.68
            },
            {
              "metric": "Completeness_Specific",
              "lower": 86.0,
              "upper": null,
              "final_lower": 86.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 86.44,
              "ml_upper": 100.0,
              "auto_lower": 92.64425,
              "auto_upper": 100.0,
              "refseq_lower": 86.6644,
              "refseq_upper": 95.05720000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.44,
              "auto_lower": 0.0,
              "auto_upper": 1.1946500000000024,
              "refseq_lower": 0.5996,
              "refseq_upper": 6.276799999999999
            },
            {
              "metric": "N50",
              "lower": 7000.0,
              "upper": null,
              "final_lower": 7000.0,
              "final_upper": null,
              "warn_lower": 10000.0,
              "warn_upper": 804997.53,
              "source": "computed",
              "ml_lower": 7111.18,
              "ml_upper": 804997.53,
              "auto_lower": 7111.18,
              "auto_upper": 804997.5250000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 700.0,
              "final_lower": null,
              "final_upper": 700.0,
              "warn_lower": 26.3,
              "warn_upper": 470.0,
              "source": "computed",
              "ml_lower": 26.3,
              "ml_upper": 692.11,
              "auto_lower": 26.295,
              "auto_upper": 692.1100000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 32991.9,
              "warn_upper": 1097208.32,
              "source": "computed",
              "ml_lower": 32991.9,
              "ml_upper": 1097208.32,
              "auto_lower": 32991.9,
              "auto_upper": 1097208.315,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 354,
            "refseq_count": 25,
            "final_count": 354,
            "filtered_out_count": 0,
            "pass_count": 325,
            "warn_count": 21,
            "fail_count": 29
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_lugdunensis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 2900000.0,
              "final_lower": 2400000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2500000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2492619.48,
              "ml_upper": 2813336.0,
              "auto_lower": 2492619.48,
              "auto_upper": 2695617.2,
              "refseq_lower": 2540323.31,
              "refseq_upper": 2811810.025
            },
            {
              "metric": "GC_Content",
              "lower": 33.59,
              "upper": 33.95,
              "final_lower": 33.59,
              "final_upper": 33.95,
              "warn_lower": 33.6,
              "warn_upper": 33.82,
              "source": "computed",
              "ml_lower": 33.5901,
              "ml_upper": 33.949,
              "auto_lower": 33.590124,
              "auto_upper": 33.820488,
              "refseq_lower": 33.694912,
              "refseq_upper": 33.9460085
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2300.0,
              "upper": 2800.0,
              "final_lower": 2300.0,
              "final_upper": 2800.0,
              "warn_lower": 2300.0,
              "warn_upper": 2600.0,
              "source": "computed",
              "ml_lower": 2344.28,
              "ml_upper": 2750.0,
              "auto_lower": 2344.28,
              "auto_upper": 2586.36,
              "refseq_lower": 2415.62,
              "refseq_upper": 2746.59
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.86,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.88015,
              "refseq_upper": 99.14225
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 2.26,
              "auto_lower": 0.046400000000000004,
              "auto_upper": 0.21439999999999998,
              "refseq_lower": 0.32,
              "refseq_upper": 2.2491499999999998
            },
            {
              "metric": "N50",
              "lower": 69000.0,
              "upper": null,
              "final_lower": 69000.0,
              "final_upper": null,
              "warn_lower": 93000.0,
              "warn_upper": 764645.4,
              "source": "computed",
              "ml_lower": 69757.16,
              "ml_upper": 764645.4,
              "auto_lower": 69757.16,
              "auto_upper": 764645.3999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 20.64,
              "warn_upper": 90.0,
              "source": "computed",
              "ml_lower": 20.64,
              "ml_upper": 92.72,
              "auto_lower": 20.64,
              "auto_upper": 92.72,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 218634.36,
              "warn_upper": 1266317.8,
              "source": "computed",
              "ml_lower": 218634.36,
              "ml_upper": 1266317.8,
              "auto_lower": 218634.36,
              "auto_upper": 1266317.8,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 129,
            "refseq_count": 32,
            "final_count": 129,
            "filtered_out_count": 0,
            "pass_count": 123,
            "warn_count": 11,
            "fail_count": 5
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Staphylococcus_pseudintermedius": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 2900000.0,
              "final_lower": 2400000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2800000.0,
              "source": "computed",
              "ml_lower": 2440997.1,
              "ml_upper": 2897277.0,
              "auto_lower": 2440997.105,
              "auto_upper": 2787435.58,
              "refseq_lower": 2511805.595,
              "refseq_upper": 2895736.185
            },
            {
              "metric": "GC_Content",
              "lower": 37.1,
              "upper": 37.81,
              "final_lower": 37.1,
              "final_upper": 37.81,
              "warn_lower": 37.24,
              "warn_upper": 37.75,
              "source": "computed",
              "ml_lower": 37.1068,
              "ml_upper": 37.8099,
              "auto_lower": 37.1868,
              "auto_upper": 37.809939,
              "refseq_lower": 37.186308000000004,
              "refseq_upper": 37.7763775
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2200.0,
              "upper": 2900.0,
              "final_lower": 2200.0,
              "final_upper": 2900.0,
              "warn_lower": 2200.0,
              "warn_upper": 2700.0,
              "source": "computed",
              "ml_lower": 2257.0,
              "ml_upper": 2875.0,
              "auto_lower": 2257.0,
              "auto_upper": 2724.785,
              "refseq_lower": 2371.39,
              "refseq_upper": 2854.15
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.08,
              "ml_upper": 100.0,
              "auto_lower": 99.92,
              "auto_upper": 100.0,
              "refseq_lower": 91.6221,
              "refseq_upper": 98.9993
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.36,
              "auto_lower": 0.0,
              "auto_upper": 0.5878499999999985,
              "refseq_lower": 0.21695,
              "refseq_upper": 5.0194500000000035
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 40000.0,
              "warn_upper": 369406.23,
              "source": "computed",
              "ml_lower": 31884.0,
              "ml_upper": 369406.23,
              "auto_lower": 31883.995,
              "auto_upper": 369406.2349999991,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 220.0,
              "final_lower": null,
              "final_upper": 220.0,
              "warn_lower": 37.0,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 37.0,
              "ml_upper": 217.78,
              "auto_lower": 37.0,
              "auto_upper": 217.78499999999985,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 92389.88,
              "warn_upper": 751405.04,
              "source": "computed",
              "ml_lower": 92389.88,
              "ml_upper": 751405.04,
              "auto_lower": 92389.88,
              "auto_upper": 751405.0449999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 5044,
            "refseq_count": 140,
            "final_count": 5044,
            "filtered_out_count": 0,
            "pass_count": 4740,
            "warn_count": 459,
            "fail_count": 289
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Staphylococcus_saprophyticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 2900000.0,
              "final_lower": 2400000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2500000.0,
              "warn_upper": 2800000.0,
              "source": "computed",
              "ml_lower": 2488173.0,
              "ml_upper": 2866743.0,
              "auto_lower": 2506631.925,
              "auto_upper": 2761508.7499999995,
              "refseq_lower": 2497145.6,
              "refseq_upper": 2854491.4
            },
            {
              "metric": "GC_Content",
              "lower": 32.82,
              "upper": 33.25,
              "final_lower": 32.82,
              "final_upper": 33.25,
              "warn_lower": 32.9,
              "warn_upper": 33.12,
              "source": "computed",
              "ml_lower": 32.8298,
              "ml_upper": 33.2472,
              "auto_lower": 32.82985,
              "auto_upper": 33.153394999999996,
              "refseq_lower": 33.02308,
              "refseq_upper": 33.24686
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2400.0,
              "upper": 3000.0,
              "final_lower": 2400.0,
              "final_upper": 3000.0,
              "warn_lower": 2400.0,
              "warn_upper": 2800.0,
              "source": "computed",
              "ml_lower": 2452.0,
              "ml_upper": 2925.0,
              "auto_lower": 2462.575,
              "auto_upper": 2752.9749999999995,
              "refseq_lower": 2461.3,
              "refseq_upper": 2907.3999999999996
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.69,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 96.89,
              "refseq_upper": 99.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.78,
              "auto_lower": 0.0,
              "auto_upper": 0.7812499999999978,
              "refseq_lower": 0.09,
              "refseq_upper": 0.56
            },
            {
              "metric": "N50",
              "lower": 60000.0,
              "upper": null,
              "final_lower": 60000.0,
              "final_upper": null,
              "warn_lower": 113000.0,
              "warn_upper": 1370519.48,
              "source": "computed",
              "ml_lower": 60515.95,
              "ml_upper": 1370519.48,
              "auto_lower": 60515.95,
              "auto_upper": 1370519.4749999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 20.0,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 20.0,
              "ml_upper": 117.27,
              "auto_lower": 20.0,
              "auto_upper": 117.27499999999986,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 168745.98,
              "warn_upper": 1370519.48,
              "source": "computed",
              "ml_lower": 168745.98,
              "ml_upper": 1370519.48,
              "auto_lower": 168745.975,
              "auto_upper": 1370519.4749999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1116,
            "refseq_count": 21,
            "final_count": 1116,
            "filtered_out_count": 0,
            "pass_count": 1047,
            "warn_count": 97,
            "fail_count": 47
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_simulans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2500000.0,
              "upper": 2900000.0,
              "final_lower": 2500000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2500000.0,
              "warn_upper": 2800000.0,
              "source": "computed",
              "ml_lower": 2533922.26,
              "ml_upper": 2871975.0,
              "auto_lower": 2533922.26,
              "auto_upper": 2822889.12,
              "refseq_lower": 2632001.795,
              "refseq_upper": 2867832.015
            },
            {
              "metric": "GC_Content",
              "lower": 35.67,
              "upper": 36.52,
              "final_lower": 35.67,
              "final_upper": 36.52,
              "warn_lower": 35.72,
              "warn_upper": 36.15,
              "source": "computed",
              "ml_lower": 35.6738,
              "ml_upper": 36.5106,
              "auto_lower": 35.673778,
              "auto_upper": 36.193152,
              "refseq_lower": 35.7429745,
              "refseq_upper": 36.477073499999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2300.0,
              "upper": 2800.0,
              "final_lower": 2300.0,
              "final_upper": 2800.0,
              "warn_lower": 2300.0,
              "warn_upper": 2700.0,
              "source": "computed",
              "ml_lower": 2378.16,
              "ml_upper": 2789.0,
              "auto_lower": 2378.16,
              "auto_upper": 2729.46,
              "refseq_lower": 2489.67,
              "refseq_upper": 2788.265
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.44,
              "ml_upper": 100.0,
              "auto_lower": 99.9658,
              "auto_upper": 100.0,
              "refseq_lower": 98.4736,
              "refseq_upper": 99.75
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.99,
              "auto_lower": 0.01,
              "auto_upper": 0.9420000000000016,
              "refseq_lower": 0.78,
              "refseq_upper": 1.9816
            },
            {
              "metric": "N50",
              "lower": 14000.0,
              "upper": null,
              "final_lower": 14000.0,
              "final_upper": null,
              "warn_lower": 24000.0,
              "warn_upper": 648101.16,
              "source": "computed",
              "ml_lower": 14866.5,
              "ml_upper": 648101.16,
              "auto_lower": 14866.5,
              "auto_upper": 648101.1600000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 370.0,
              "final_lower": null,
              "final_upper": 370.0,
              "warn_lower": 21.0,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 21.0,
              "ml_upper": 365.0,
              "auto_lower": 21.0,
              "auto_upper": 365.0000000000008,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 61536.86,
              "warn_upper": 1090817.36,
              "source": "computed",
              "ml_lower": 61536.86,
              "ml_upper": 1090817.36,
              "auto_lower": 61536.86,
              "auto_upper": 1090817.3600000024,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 317,
            "refseq_count": 22,
            "final_count": 317,
            "filtered_out_count": 0,
            "pass_count": 298,
            "warn_count": 26,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_warneri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2300000.0,
              "upper": 2800000.0,
              "final_lower": 2300000.0,
              "final_upper": 2800000.0,
              "warn_lower": 2300000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2333559.12,
              "ml_upper": 2780266.0,
              "auto_lower": 2333559.125,
              "auto_upper": 2656107.575,
              "refseq_lower": 2427637.65,
              "refseq_upper": 2771780.2
            },
            {
              "metric": "GC_Content",
              "lower": 32.42,
              "upper": 32.84,
              "final_lower": 32.42,
              "final_upper": 32.84,
              "warn_lower": 32.43,
              "warn_upper": 32.72,
              "source": "computed",
              "ml_lower": 32.4259,
              "ml_upper": 32.8394,
              "auto_lower": 32.4259425,
              "auto_upper": 32.791305,
              "refseq_lower": 32.548975000000006,
              "refseq_upper": 32.8390175
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2200.0,
              "upper": 2800.0,
              "final_lower": 2200.0,
              "final_upper": 2800.0,
              "warn_lower": 2300.0,
              "warn_upper": 2600.0,
              "source": "computed",
              "ml_lower": 2246.72,
              "ml_upper": 2728.0,
              "auto_lower": 2246.725,
              "auto_upper": 2642.1000000000004,
              "refseq_lower": 2348.94,
              "refseq_upper": 2723.73
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.35,
              "ml_upper": 100.0,
              "auto_lower": 99.98825,
              "auto_upper": 100.0,
              "refseq_lower": 97.386,
              "refseq_upper": 99.73
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.97,
              "auto_lower": 0.01,
              "auto_upper": 0.9717500000000001,
              "refseq_lower": 0.1,
              "refseq_upper": 0.1994
            },
            {
              "metric": "N50",
              "lower": 25000.0,
              "upper": null,
              "final_lower": 25000.0,
              "final_upper": null,
              "warn_lower": 31000.0,
              "warn_upper": 1277193.0,
              "source": "computed",
              "ml_lower": 25906.72,
              "ml_upper": 1277193.0,
              "auto_lower": 25906.725,
              "auto_upper": 1277193.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 20.65,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 20.65,
              "ml_upper": 198.58,
              "auto_lower": 20.65,
              "auto_upper": 198.57500000000056,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 91053.7,
              "warn_upper": 1277193.0,
              "source": "computed",
              "ml_lower": 91053.7,
              "ml_upper": 1277193.0,
              "auto_lower": 91053.7,
              "auto_upper": 1277193.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 166,
            "refseq_count": 16,
            "final_count": 166,
            "filtered_out_count": 0,
            "pass_count": 155,
            "warn_count": 17,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Staphylococcus_xylosus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2700000.0,
              "upper": 3000000.0,
              "final_lower": 2700000.0,
              "final_upper": 3000000.0,
              "warn_lower": 2700000.0,
              "warn_upper": 3000000.0,
              "source": "computed",
              "ml_lower": 2730639.0,
              "ml_upper": 2983043.0,
              "auto_lower": 2730639.0,
              "auto_upper": 2962521.4000000004,
              "refseq_lower": 2761198.125,
              "refseq_upper": 2982012.25
            },
            {
              "metric": "GC_Content",
              "lower": 32.43,
              "upper": 32.98,
              "final_lower": 32.43,
              "final_upper": 32.98,
              "warn_lower": 32.5,
              "warn_upper": 32.74,
              "source": "computed",
              "ml_lower": 32.4399,
              "ml_upper": 32.9743,
              "auto_lower": 32.43988,
              "auto_upper": 32.75528,
              "refseq_lower": 32.6493,
              "refseq_upper": 32.9648875
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2500.0,
              "upper": 2900.0,
              "final_lower": 2500.0,
              "final_upper": 2900.0,
              "warn_lower": 2500.0,
              "warn_upper": 2800.0,
              "source": "computed",
              "ml_lower": 2531.6,
              "ml_upper": 2884.0,
              "auto_lower": 2531.6,
              "auto_upper": 2838.600000000001,
              "refseq_lower": 2599.125,
              "refseq_upper": 2883.375
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.82,
              "ml_upper": 100.0,
              "auto_lower": 99.95,
              "auto_upper": 100.0,
              "refseq_lower": 97.92625,
              "refseq_upper": 99.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.81,
              "auto_lower": 0.0,
              "auto_upper": 0.35,
              "refseq_lower": 0.47,
              "refseq_upper": 1.76125
            },
            {
              "metric": "N50",
              "lower": 72000.0,
              "upper": null,
              "final_lower": 72000.0,
              "final_upper": null,
              "warn_lower": 117000.0,
              "warn_upper": 637878.6,
              "source": "computed",
              "ml_lower": 72015.2,
              "ml_upper": 637878.6,
              "auto_lower": 72015.2,
              "auto_upper": 637878.6000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 19.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 19.0,
              "ml_upper": 118.8,
              "auto_lower": 19.0,
              "auto_upper": 118.80000000000052,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 194744.8,
              "warn_upper": 1377571.0,
              "source": "computed",
              "ml_lower": 194744.8,
              "ml_upper": 1377571.0,
              "auto_lower": 194744.80000000002,
              "auto_upper": 1377571.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 281,
            "refseq_count": 26,
            "final_count": 281,
            "filtered_out_count": 0,
            "pass_count": 259,
            "warn_count": 23,
            "fail_count": 21
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Stenotrophomonas_geniculata": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5300000.0,
              "final_lower": 4400000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 5300000.0,
              "source": "computed",
              "ml_lower": 4430698.12,
              "ml_upper": 5291737.4,
              "auto_lower": 4430698.12,
              "auto_upper": 5291737.4,
              "refseq_lower": 4487246.475,
              "refseq_upper": 4961823.32
            },
            {
              "metric": "GC_Content",
              "lower": 65.7,
              "upper": 66.69,
              "final_lower": 65.7,
              "final_upper": 66.69,
              "warn_lower": 65.7,
              "warn_upper": 66.64,
              "source": "computed",
              "ml_lower": 65.7045,
              "ml_upper": 66.6805,
              "auto_lower": 65.7045495,
              "auto_upper": 66.6805365,
              "refseq_lower": 66.061951,
              "refseq_upper": 66.56271149999999
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 5000.0,
              "final_lower": 3900.0,
              "final_upper": 5000.0,
              "warn_lower": 3900.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 3968.78,
              "ml_upper": 4907.65,
              "auto_lower": 3968.785,
              "auto_upper": 4907.645,
              "refseq_lower": 4118.495,
              "refseq_upper": 4690.33
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.41,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.6699,
              "refseq_upper": 99.46929999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 3.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.61,
              "auto_lower": 0.0,
              "auto_upper": 2.61,
              "refseq_lower": 0.06,
              "refseq_upper": 0.93655
            },
            {
              "metric": "N50",
              "lower": 31000.0,
              "upper": null,
              "final_lower": 31000.0,
              "final_upper": null,
              "warn_lower": 49000.0,
              "warn_upper": 1168706.19,
              "source": "computed",
              "ml_lower": 31606.84,
              "ml_upper": 1168706.19,
              "auto_lower": 31606.845,
              "auto_upper": 1168706.19,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 260.0,
              "final_lower": null,
              "final_upper": 260.0,
              "warn_lower": 16.78,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 16.78,
              "ml_upper": 255.58,
              "auto_lower": 16.785,
              "auto_upper": 255.58000000000004,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 119486.63,
              "warn_upper": 1726589.45,
              "source": "computed",
              "ml_lower": 119486.63,
              "ml_upper": 1726589.45,
              "auto_lower": 119486.63,
              "auto_upper": 1726589.4500000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 120,
            "refseq_count": 24,
            "final_count": 120,
            "filtered_out_count": 0,
            "pass_count": 121,
            "warn_count": 7,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Stenotrophomonas_maltophilia": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4100000.0,
              "upper": 5200000.0,
              "final_lower": 4100000.0,
              "final_upper": 5200000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 5200000.0,
              "source": "computed",
              "ml_lower": 4111737.0,
              "ml_upper": 5197836.48,
              "auto_lower": 4178062.8,
              "auto_upper": 5197836.4799999995,
              "refseq_lower": 4115556.735,
              "refseq_upper": 5039769.015
            },
            {
              "metric": "GC_Content",
              "lower": 65.62,
              "upper": 67.63,
              "final_lower": 65.62,
              "final_upper": 67.63,
              "warn_lower": 65.87,
              "warn_upper": 66.9,
              "source": "computed",
              "ml_lower": 65.6296,
              "ml_upper": 67.6255,
              "auto_lower": 65.778204,
              "auto_upper": 67.05247200000001,
              "refseq_lower": 65.78345949999999,
              "refseq_upper": 67.5180115
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3700.0,
              "upper": 4900.0,
              "final_lower": 3700.0,
              "final_upper": 4900.0,
              "warn_lower": 3900.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 3718.0,
              "ml_upper": 4811.08,
              "auto_lower": 3727.76,
              "auto_upper": 4811.08,
              "refseq_lower": 3726.265,
              "refseq_upper": 4715.43
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.1,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.5611,
              "refseq_upper": 99.41345
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.69,
              "auto_lower": 0.0,
              "auto_upper": 2.432399999999998,
              "refseq_lower": 0.12,
              "refseq_upper": 4.415949999999999
            },
            {
              "metric": "N50",
              "lower": 23000.0,
              "upper": null,
              "final_lower": 23000.0,
              "final_upper": null,
              "warn_lower": 31000.0,
              "warn_upper": 611681.44,
              "source": "computed",
              "ml_lower": 23976.84,
              "ml_upper": 611681.44,
              "auto_lower": 23976.84,
              "auto_upper": 611681.4399999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 380.0,
              "final_lower": null,
              "final_upper": 380.0,
              "warn_lower": 26.0,
              "warn_upper": 290.0,
              "source": "computed",
              "ml_lower": 26.0,
              "ml_upper": 377.96,
              "auto_lower": 26.0,
              "auto_upper": 377.9599999999982,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 98899.44,
              "warn_upper": 1165643.0,
              "source": "computed",
              "ml_lower": 98899.44,
              "ml_upper": 1165643.0,
              "auto_lower": 98899.44,
              "auto_upper": 1165642.9999999988,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1793,
            "refseq_count": 88,
            "final_count": 1793,
            "filtered_out_count": 0,
            "pass_count": 1645,
            "warn_count": 170,
            "fail_count": 89
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Stenotrophomonas_pavanii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 4900000.0,
              "final_lower": 4300000.0,
              "final_upper": 4900000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 4900000.0,
              "source": "computed",
              "ml_lower": 4303610.4,
              "ml_upper": 4855832.2,
              "auto_lower": 4303610.4,
              "auto_upper": 4855832.2,
              "refseq_lower": 4331536.56,
              "refseq_upper": 4828760.36
            },
            {
              "metric": "GC_Content",
              "lower": 66.77,
              "upper": 67.51,
              "final_lower": 66.77,
              "final_upper": 67.51,
              "warn_lower": 66.81,
              "warn_upper": 67.49,
              "source": "computed",
              "ml_lower": 66.773,
              "ml_upper": 67.5039,
              "auto_lower": 66.772988,
              "auto_upper": 67.503924,
              "refseq_lower": 66.802068,
              "refseq_upper": 67.408596
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3800.0,
              "upper": 4600.0,
              "final_lower": 3800.0,
              "final_upper": 4600.0,
              "warn_lower": 3800.0,
              "warn_upper": 4500.0,
              "source": "computed",
              "ml_lower": 3857.48,
              "ml_upper": 4580.16,
              "auto_lower": 3857.48,
              "auto_upper": 4580.16,
              "refseq_lower": 3937.16,
              "refseq_upper": 4528.52
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.81,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.1196,
              "refseq_upper": 99.51
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.45,
              "auto_lower": 0.0,
              "auto_upper": 0.8015999999999996,
              "refseq_lower": 0.18,
              "refseq_upper": 1.4391999999999998
            },
            {
              "metric": "N50",
              "lower": 38000.0,
              "upper": null,
              "final_lower": 38000.0,
              "final_upper": null,
              "warn_lower": 43000.0,
              "warn_upper": 497070.64,
              "source": "computed",
              "ml_lower": 38503.16,
              "ml_upper": 497070.64,
              "auto_lower": 38503.16,
              "auto_upper": 497070.6399999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 31.96,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 31.96,
              "ml_upper": 207.68,
              "auto_lower": 31.96,
              "auto_upper": 207.67999999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 150196.08,
              "warn_upper": 961066.6,
              "source": "computed",
              "ml_lower": 150196.08,
              "ml_upper": 961066.6,
              "auto_lower": 150196.08,
              "auto_upper": 961066.6,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 97,
            "refseq_count": 25,
            "final_count": 97,
            "filtered_out_count": 0,
            "pass_count": 96,
            "warn_count": 15,
            "fail_count": 6
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Stenotrophomonas_sepilia": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 4800000.0,
              "final_lower": 4200000.0,
              "final_upper": 4800000.0,
              "warn_lower": 4200000.0,
              "warn_upper": 4800000.0,
              "source": "computed",
              "ml_lower": 4261093.05,
              "ml_upper": 4744180.7,
              "auto_lower": 4261093.05,
              "auto_upper": 4744180.7,
              "refseq_lower": 4326354.47,
              "refseq_upper": 4682866.03
            },
            {
              "metric": "GC_Content",
              "lower": 66.1,
              "upper": 66.96,
              "final_lower": 66.1,
              "final_upper": 66.96,
              "warn_lower": 66.29,
              "warn_upper": 66.86,
              "source": "computed",
              "ml_lower": 66.1064,
              "ml_upper": 66.9565,
              "auto_lower": 66.28621,
              "auto_upper": 66.956505,
              "refseq_lower": 66.12691699999999,
              "refseq_upper": 66.785985
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3800.0,
              "upper": 4500.0,
              "final_lower": 3800.0,
              "final_upper": 4500.0,
              "warn_lower": 3800.0,
              "warn_upper": 4400.0,
              "source": "computed",
              "ml_lower": 3827.5,
              "ml_upper": 4417.0,
              "auto_lower": 3827.5,
              "auto_upper": 4360.9,
              "refseq_lower": 3977.96,
              "refseq_upper": 4406.78
            },
            {
              "metric": "Completeness_Specific",
              "lower": 70.0,
              "upper": null,
              "final_lower": 70.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 70.38,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 71.9641,
              "refseq_upper": 99.6379
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.04,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 1.24,
              "auto_lower": 0.08549999999999999,
              "auto_upper": 1.2385000000000004,
              "refseq_lower": 0.04,
              "refseq_upper": 0.9987999999999999
            },
            {
              "metric": "N50",
              "lower": 45000.0,
              "upper": null,
              "final_lower": 45000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 386384.35,
              "source": "computed",
              "ml_lower": 45182.9,
              "ml_upper": 386384.35,
              "auto_lower": 45182.9,
              "auto_upper": 386384.35000000015,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 200.0,
              "final_lower": null,
              "final_upper": 200.0,
              "warn_lower": 34.65,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 34.65,
              "ml_upper": 195.15,
              "auto_lower": 34.65,
              "auto_upper": 195.15000000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 152873.65,
              "warn_upper": 1018580.3,
              "source": "computed",
              "ml_lower": 152873.65,
              "ml_upper": 1018580.3,
              "auto_lower": 152873.65,
              "auto_upper": 1018580.3000000006,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 111,
            "refseq_count": 15,
            "final_count": 111,
            "filtered_out_count": 0,
            "pass_count": 116,
            "warn_count": 11,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_agalactiae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2500000.0,
              "final_lower": 1900000.0,
              "final_upper": 2500000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1951859.0,
              "ml_upper": 2486601.0,
              "auto_lower": 1952246.32,
              "auto_upper": 2256534.59,
              "refseq_lower": 1966548.05,
              "refseq_upper": 2376345.1499999994
            },
            {
              "metric": "GC_Content",
              "lower": 35.05,
              "upper": 36.02,
              "final_lower": 35.05,
              "final_upper": 36.02,
              "warn_lower": 35.12,
              "warn_upper": 35.53,
              "source": "computed",
              "ml_lower": 35.0572,
              "ml_upper": 36.0181,
              "auto_lower": 35.057211,
              "auto_upper": 35.613668,
              "refseq_lower": 35.347705000000005,
              "refseq_upper": 35.989595
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2600.0,
              "final_lower": 1900.0,
              "final_upper": 2600.0,
              "warn_lower": 1900.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1903.0,
              "ml_upper": 2533.0,
              "auto_lower": 1903.0,
              "auto_upper": 2271.0,
              "refseq_lower": 1978.3,
              "refseq_upper": 2415.65
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.09,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.641,
              "refseq_upper": 99.55
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.17,
              "auto_lower": 0.03,
              "auto_upper": 0.48,
              "refseq_lower": 0.08,
              "refseq_upper": 1.644800000000007
            },
            {
              "metric": "N50",
              "lower": 37000.0,
              "upper": null,
              "final_lower": 37000.0,
              "final_upper": null,
              "warn_lower": 42000.0,
              "warn_upper": 622338.48,
              "source": "computed",
              "ml_lower": 37322.0,
              "ml_upper": 622338.48,
              "auto_lower": 37322.0,
              "auto_upper": 622338.48,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 17.0,
              "warn_upper": 110.0,
              "source": "computed",
              "ml_lower": 17.0,
              "ml_upper": 124.0,
              "auto_lower": 17.0,
              "auto_upper": 124.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 94900.11,
              "warn_upper": 846733.0,
              "source": "computed",
              "ml_lower": 94900.11,
              "ml_upper": 846733.0,
              "auto_lower": 94900.11,
              "auto_upper": 846733.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 34823,
            "refseq_count": 211,
            "final_count": 34823,
            "filtered_out_count": 0,
            "pass_count": 33260,
            "warn_count": 2718,
            "fail_count": 1350
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_anginosus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2300000.0,
              "final_lower": 1800000.0,
              "final_upper": 2300000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1820579.24,
              "ml_upper": 2284041.0,
              "auto_lower": 1820579.24,
              "auto_upper": 2233362.7600000002,
              "refseq_lower": 1854295.73,
              "refseq_upper": 2278244.8850000002
            },
            {
              "metric": "GC_Content",
              "lower": 38.04,
              "upper": 39.22,
              "final_lower": 38.04,
              "final_upper": 39.22,
              "warn_lower": 38.34,
              "warn_upper": 39.1,
              "source": "computed",
              "ml_lower": 38.0408,
              "ml_upper": 39.2121,
              "auto_lower": 38.209344,
              "auto_upper": 39.212108,
              "refseq_lower": 38.063064,
              "refseq_upper": 39.1347185
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2400.0,
              "final_lower": 1700.0,
              "final_upper": 2400.0,
              "warn_lower": 1700.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1758.52,
              "ml_upper": 2328.96,
              "auto_lower": 1758.52,
              "auto_upper": 2328.96,
              "refseq_lower": 1838.69,
              "refseq_upper": 2262.86
            },
            {
              "metric": "Completeness_Specific",
              "lower": 89.0,
              "upper": null,
              "final_lower": 89.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 89.11,
              "ml_upper": 100.0,
              "auto_lower": 99.96,
              "auto_upper": 100.0,
              "refseq_lower": 89.2089,
              "refseq_upper": 99.27
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.04,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.04,
              "ml_upper": 2.24,
              "auto_lower": 0.04,
              "auto_upper": 1.07,
              "refseq_lower": 0.08,
              "refseq_upper": 2.2181500000000005
            },
            {
              "metric": "N50",
              "lower": 70000.0,
              "upper": null,
              "final_lower": 70000.0,
              "final_upper": null,
              "warn_lower": 81000.0,
              "warn_upper": 536511.88,
              "source": "computed",
              "ml_lower": 70495.24,
              "ml_upper": 536511.88,
              "auto_lower": 70495.24,
              "auto_upper": 536511.8800000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 13.04,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 13.04,
              "ml_upper": 105.0,
              "auto_lower": 13.04,
              "auto_upper": 105.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 135674.88,
              "warn_upper": 821824.64,
              "source": "computed",
              "ml_lower": 135674.88,
              "ml_upper": 821824.64,
              "auto_lower": 135674.88,
              "auto_upper": 821824.64,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 209,
            "refseq_count": 24,
            "final_count": 209,
            "filtered_out_count": 0,
            "pass_count": 202,
            "warn_count": 20,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_canis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2300000.0,
              "final_lower": 1800000.0,
              "final_upper": 2300000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1874633.2,
              "ml_upper": 2265274.0,
              "auto_lower": 1874633.2,
              "auto_upper": 2264286.88,
              "refseq_lower": 2085290.75,
              "refseq_upper": 2263098.1
            },
            {
              "metric": "GC_Content",
              "lower": 39.44,
              "upper": 39.87,
              "final_lower": 39.44,
              "final_upper": 39.87,
              "warn_lower": 39.47,
              "warn_upper": 39.78,
              "source": "computed",
              "ml_lower": 39.4413,
              "ml_upper": 39.8602,
              "auto_lower": 39.441328,
              "auto_upper": 39.7777,
              "refseq_lower": 39.6055075,
              "refseq_upper": 39.8571875
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2300.0,
              "final_lower": 1700.0,
              "final_upper": 2300.0,
              "warn_lower": 1800.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1788.0,
              "ml_upper": 2247.0,
              "auto_lower": 1788.0,
              "auto_upper": 2238.84,
              "refseq_lower": 2064.375,
              "refseq_upper": 2245.075
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.43,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.43275000000001,
              "refseq_upper": 99.54
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.13,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 1.05,
              "auto_lower": 0.13,
              "auto_upper": 1.05,
              "refseq_lower": 0.1313,
              "refseq_upper": 0.3887
            },
            {
              "metric": "N50",
              "lower": 45000.0,
              "upper": null,
              "final_lower": 45000.0,
              "final_upper": null,
              "warn_lower": 55000.0,
              "warn_upper": 230759.0,
              "source": "computed",
              "ml_lower": 45211.44,
              "ml_upper": 230759.0,
              "auto_lower": 45211.44,
              "auto_upper": 230759.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 42.0,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 42.0,
              "ml_upper": 144.0,
              "auto_lower": 42.0,
              "auto_upper": 144.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 122547.0,
              "warn_upper": 447153.72,
              "source": "computed",
              "ml_lower": 122547.0,
              "ml_upper": 447153.72,
              "auto_lower": 122547.0,
              "auto_upper": 447153.72,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 113,
            "refseq_count": 6,
            "final_count": 113,
            "filtered_out_count": 0,
            "pass_count": 106,
            "warn_count": 8,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_dysgalactiae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2400000.0,
              "final_lower": 1900000.0,
              "final_upper": 2400000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1961974.0,
              "ml_upper": 2338762.0,
              "auto_lower": 1961974.0,
              "auto_upper": 2277880.2,
              "refseq_lower": 2025792.35,
              "refseq_upper": 2338582.925
            },
            {
              "metric": "GC_Content",
              "lower": 38.99,
              "upper": 39.92,
              "final_lower": 38.99,
              "final_upper": 39.92,
              "warn_lower": 39.09,
              "warn_upper": 39.57,
              "source": "computed",
              "ml_lower": 38.9992,
              "ml_upper": 39.9191,
              "auto_lower": 38.99922,
              "auto_upper": 39.62014,
              "refseq_lower": 39.16213,
              "refseq_upper": 39.9160775
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2500.0,
              "final_lower": 1900.0,
              "final_upper": 2500.0,
              "warn_lower": 1900.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1929.6,
              "ml_upper": 2418.0,
              "auto_lower": 1929.6,
              "auto_upper": 2329.0000000000005,
              "refseq_lower": 2006.975,
              "refseq_upper": 2395.8999999999996
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.2,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 91.2975,
              "refseq_upper": 98.60175
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.1,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.1,
              "ml_upper": 3.98,
              "auto_lower": 0.1,
              "auto_upper": 0.6280000000000018,
              "refseq_lower": 0.12,
              "refseq_upper": 3.5737499999999964
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 45000.0,
              "warn_upper": 122706.8,
              "source": "computed",
              "ml_lower": 33205.4,
              "ml_upper": 122706.8,
              "auto_lower": 33205.4,
              "auto_upper": 122706.80000000018,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 190.0,
              "final_lower": null,
              "final_upper": 190.0,
              "warn_lower": 65.6,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 65.6,
              "ml_upper": 187.0,
              "auto_lower": 65.6,
              "auto_upper": 187.00000000000045,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 88314.4,
              "warn_upper": 301612.4,
              "source": "computed",
              "ml_lower": 88314.4,
              "ml_upper": 301612.4,
              "auto_lower": 88314.4,
              "auto_upper": 301612.4,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1521,
            "refseq_count": 66,
            "final_count": 1521,
            "filtered_out_count": 0,
            "pass_count": 1391,
            "warn_count": 141,
            "fail_count": 70
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_equi": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2300000.0,
              "final_lower": 1900000.0,
              "final_upper": 2300000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1980516.54,
              "ml_upper": 2284597.0,
              "auto_lower": 1980516.535,
              "auto_upper": 2201499.15,
              "refseq_lower": 2027425.8,
              "refseq_upper": 2282091.8
            },
            {
              "metric": "GC_Content",
              "lower": 40.95,
              "upper": 41.86,
              "final_lower": 40.95,
              "final_upper": 41.86,
              "warn_lower": 41.12,
              "warn_upper": 41.72,
              "source": "computed",
              "ml_lower": 40.9515,
              "ml_upper": 41.8554,
              "auto_lower": 40.9514865,
              "auto_upper": 41.791996000000005,
              "refseq_lower": 41.25698,
              "refseq_upper": 41.85226
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2300.0,
              "final_lower": 1800.0,
              "final_upper": 2300.0,
              "warn_lower": 1800.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1835.82,
              "ml_upper": 2240.0,
              "auto_lower": 1835.82,
              "auto_upper": 2200.3150000000005,
              "refseq_lower": 1915.8,
              "refseq_upper": 2234.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.08,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.112,
              "refseq_upper": 99.34
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.05,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.05,
              "ml_upper": 1.72,
              "auto_lower": 0.05,
              "auto_upper": 0.9104500000000008,
              "refseq_lower": 0.12,
              "refseq_upper": 1.6839999999999995
            },
            {
              "metric": "N50",
              "lower": 24000.0,
              "upper": null,
              "final_lower": 24000.0,
              "final_upper": null,
              "warn_lower": 29000.0,
              "warn_upper": 124776.03,
              "source": "computed",
              "ml_lower": 24412.8,
              "ml_upper": 124776.03,
              "auto_lower": 24412.795,
              "auto_upper": 124776.03000000012,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 44.96,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 44.96,
              "ml_upper": 203.05,
              "auto_lower": 44.955,
              "auto_upper": 203.04500000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 65941.57,
              "warn_upper": 340481.83,
              "source": "computed",
              "ml_lower": 65941.57,
              "ml_upper": 340481.83,
              "auto_lower": 65941.57,
              "auto_upper": 340481.8250000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1792,
            "refseq_count": 41,
            "final_count": 1792,
            "filtered_out_count": 0,
            "pass_count": 1700,
            "warn_count": 200,
            "fail_count": 85
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_gordonii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2100000.0,
              "upper": 2400000.0,
              "final_lower": 2100000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 2106325.75,
              "ml_upper": 2322064.65,
              "auto_lower": 2106325.75,
              "auto_upper": 2322064.65,
              "refseq_lower": 2123820.525,
              "refseq_upper": 2281338.075
            },
            {
              "metric": "GC_Content",
              "lower": 40.17,
              "upper": 40.69,
              "final_lower": 40.17,
              "final_upper": 40.69,
              "warn_lower": 40.25,
              "warn_upper": 40.64,
              "source": "computed",
              "ml_lower": 40.1797,
              "ml_upper": 40.6838,
              "auto_lower": 40.179735,
              "auto_upper": 40.63966,
              "refseq_lower": 40.3574725,
              "refseq_upper": 40.676989999999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2000.0,
              "upper": 2300.0,
              "final_lower": 2000.0,
              "final_upper": 2300.0,
              "warn_lower": 2000.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 2010.2,
              "ml_upper": 2277.75,
              "auto_lower": 2010.2,
              "auto_upper": 2277.75,
              "refseq_lower": 2085.95,
              "refseq_upper": 2261.4
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.23,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 99.23,
              "refseq_upper": 99.89325000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.49,
              "auto_lower": 0.01,
              "auto_upper": 0.49149999999999905,
              "refseq_lower": 0.39,
              "refseq_upper": 0.39
            },
            {
              "metric": "N50",
              "lower": 104000.0,
              "upper": null,
              "final_lower": 104000.0,
              "final_upper": null,
              "warn_lower": 148000.0,
              "warn_upper": 687817.55,
              "source": "computed",
              "ml_lower": 104257.05,
              "ml_upper": 687817.55,
              "auto_lower": 104257.05,
              "auto_upper": 687817.55,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 70.0,
              "final_lower": null,
              "final_upper": 70.0,
              "warn_lower": 12.0,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 12.0,
              "ml_upper": 60.05,
              "auto_lower": 12.0,
              "auto_upper": 60.04999999999997,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 228132.05,
              "warn_upper": 1002499.55,
              "source": "computed",
              "ml_lower": 228132.05,
              "ml_upper": 1002499.55,
              "auto_lower": 228132.05,
              "auto_upper": 1002499.5499999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 91,
            "refseq_count": 16,
            "final_count": 91,
            "filtered_out_count": 0,
            "pass_count": 83,
            "warn_count": 8,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_mitis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1800000.0,
              "upper": 2300000.0,
              "final_lower": 1800000.0,
              "final_upper": 2300000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 1817526.28,
              "ml_upper": 2259601.02,
              "auto_lower": 1817526.28,
              "auto_upper": 2259601.0199999996,
              "refseq_lower": 1868857.18,
              "refseq_upper": 2217255.52
            },
            {
              "metric": "GC_Content",
              "lower": 39.25,
              "upper": 41.19,
              "final_lower": 39.25,
              "final_upper": 41.19,
              "warn_lower": 39.44,
              "warn_upper": 40.72,
              "source": "computed",
              "ml_lower": 39.2525,
              "ml_upper": 41.1815,
              "auto_lower": 39.252475999999994,
              "auto_upper": 41.181454,
              "refseq_lower": 39.610016,
              "refseq_upper": 40.513683
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2300.0,
              "final_lower": 1700.0,
              "final_upper": 2300.0,
              "warn_lower": 1700.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1731.0,
              "ml_upper": 2225.28,
              "auto_lower": 1731.0,
              "auto_upper": 2225.2799999999997,
              "refseq_lower": 1797.09,
              "refseq_upper": 2163.57
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.31,
              "ml_upper": 100.0,
              "auto_lower": 99.76859999999999,
              "auto_upper": 100.0,
              "refseq_lower": 92.6898,
              "refseq_upper": 99.82
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.11,
              "auto_lower": 0.0,
              "auto_upper": 0.6413999999999999,
              "refseq_lower": 0.2,
              "refseq_upper": 1.1082
            },
            {
              "metric": "N50",
              "lower": 41000.0,
              "upper": null,
              "final_lower": 41000.0,
              "final_upper": null,
              "warn_lower": 55000.0,
              "warn_upper": 552485.44,
              "source": "computed",
              "ml_lower": 41659.84,
              "ml_upper": 552485.44,
              "auto_lower": 41659.840000000004,
              "auto_upper": 552485.44,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 170.0,
              "final_lower": null,
              "final_upper": 170.0,
              "warn_lower": 14.0,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 14.0,
              "ml_upper": 165.96,
              "auto_lower": 14.0,
              "auto_upper": 165.9599999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 100454.12,
              "warn_upper": 902186.0,
              "source": "computed",
              "ml_lower": 100454.12,
              "ml_upper": 902186.0,
              "auto_lower": 100454.12,
              "auto_upper": 902185.9999999995,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 373,
            "refseq_count": 19,
            "final_count": 373,
            "filtered_out_count": 0,
            "pass_count": 346,
            "warn_count": 33,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_mutans": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2200000.0,
              "final_lower": 1900000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2100000.0,
              "source": "computed",
              "ml_lower": 1929699.19,
              "ml_upper": 2115009.0,
              "auto_lower": 1929699.19,
              "auto_upper": 2109916.4,
              "refseq_lower": 1976669.135,
              "refseq_upper": 2114976.825
            },
            {
              "metric": "GC_Content",
              "lower": 36.56,
              "upper": 37.06,
              "final_lower": 36.56,
              "final_upper": 37.06,
              "warn_lower": 36.59,
              "warn_upper": 36.91,
              "source": "computed",
              "ml_lower": 36.5686,
              "ml_upper": 37.0527,
              "auto_lower": 36.5686155,
              "auto_upper": 36.923511,
              "refseq_lower": 36.740575500000006,
              "refseq_upper": 37.050951
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2100.0,
              "final_lower": 1800.0,
              "final_upper": 2100.0,
              "warn_lower": 1800.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1825.1,
              "ml_upper": 2080.0,
              "auto_lower": 1825.105,
              "auto_upper": 2013.4249999999997,
              "refseq_lower": 1940.99,
              "refseq_upper": 2079.505
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.29,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 94.30980000000001,
              "refseq_upper": 99.57
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.13,
              "auto_lower": 0.03,
              "auto_upper": 0.6863499999999976,
              "refseq_lower": 0.35824999999999996,
              "refseq_upper": 2.0772000000000004
            },
            {
              "metric": "N50",
              "lower": 74000.0,
              "upper": null,
              "final_lower": 74000.0,
              "final_upper": null,
              "warn_lower": 109000.0,
              "warn_upper": 677526.24,
              "source": "computed",
              "ml_lower": 74722.32,
              "ml_upper": 677526.24,
              "auto_lower": 74722.32,
              "auto_upper": 677526.235,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 13.0,
              "warn_upper": 60.0,
              "source": "computed",
              "ml_lower": 13.0,
              "ml_upper": 82.05,
              "auto_lower": 13.0,
              "auto_upper": 82.05499999999984,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 208004.27,
              "warn_upper": 791977.49,
              "source": "computed",
              "ml_lower": 208004.27,
              "ml_upper": 791977.49,
              "auto_lower": 208004.27,
              "auto_upper": 791977.4949999996,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 422,
            "refseq_count": 34,
            "final_count": 422,
            "filtered_out_count": 0,
            "pass_count": 387,
            "warn_count": 37,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_oralis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2200000.0,
              "final_lower": 1700000.0,
              "final_upper": 2200000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1788851.8,
              "ml_upper": 2187268.0,
              "auto_lower": 1788851.805,
              "auto_upper": 2177119.6600000006,
              "refseq_lower": 1873111.105,
              "refseq_upper": 2172645.61
            },
            {
              "metric": "GC_Content",
              "lower": 39.39,
              "upper": 41.51,
              "final_lower": 39.39,
              "final_upper": 41.51,
              "warn_lower": 39.86,
              "warn_upper": 41.39,
              "source": "computed",
              "ml_lower": 39.3931,
              "ml_upper": 41.5089,
              "auto_lower": 39.39311,
              "auto_upper": 41.435332,
              "refseq_lower": 40.911239,
              "refseq_upper": 41.5088535
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2200.0,
              "final_lower": 1700.0,
              "final_upper": 2200.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1733.7,
              "ml_upper": 2190.0,
              "auto_lower": 1733.695,
              "auto_upper": 2139.575000000001,
              "refseq_lower": 1832.975,
              "refseq_upper": 2172.02
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.05,
              "ml_upper": 100.0,
              "auto_lower": 99.92005,
              "auto_upper": 100.0,
              "refseq_lower": 96.15075,
              "refseq_upper": 99.83
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.97,
              "auto_lower": 0.0,
              "auto_upper": 0.5699500000000006,
              "refseq_lower": 0.09,
              "refseq_upper": 1.9296999999999997
            },
            {
              "metric": "N50",
              "lower": 54000.0,
              "upper": null,
              "final_lower": 54000.0,
              "final_upper": null,
              "warn_lower": 84000.0,
              "warn_upper": 1387286.01,
              "source": "computed",
              "ml_lower": 54033.9,
              "ml_upper": 1387286.01,
              "auto_lower": 54033.9,
              "auto_upper": 1387286.0050000006,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 8.0,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 8.0,
              "ml_upper": 111.97,
              "auto_lower": 8.0,
              "auto_upper": 111.97000000000037,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 175688.98,
              "warn_upper": 1387286.01,
              "source": "computed",
              "ml_lower": 175688.98,
              "ml_upper": 1387286.01,
              "auto_lower": 175688.98,
              "auto_upper": 1387286.0050000006,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 268,
            "refseq_count": 32,
            "final_count": 268,
            "filtered_out_count": 0,
            "pass_count": 249,
            "warn_count": 23,
            "fail_count": 13
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_parasanguinis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2300000.0,
              "final_lower": 2000000.0,
              "final_upper": 2300000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2300000.0,
              "source": "computed",
              "ml_lower": 2009054.14,
              "ml_upper": 2286952.0,
              "auto_lower": 2009054.135,
              "auto_upper": 2271343.49,
              "refseq_lower": 2122323.375,
              "refseq_upper": 2284068.425
            },
            {
              "metric": "GC_Content",
              "lower": 41.29,
              "upper": 42.18,
              "final_lower": 41.29,
              "final_upper": 42.18,
              "warn_lower": 41.33,
              "warn_upper": 42.08,
              "source": "computed",
              "ml_lower": 41.2987,
              "ml_upper": 42.1714,
              "auto_lower": 41.298709,
              "auto_upper": 42.171443000000004,
              "refseq_lower": 41.61542,
              "refseq_upper": 42.00667
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2200.0,
              "final_lower": 1900.0,
              "final_upper": 2200.0,
              "warn_lower": 1900.0,
              "warn_upper": 2200.0,
              "source": "computed",
              "ml_lower": 1903.6,
              "ml_upper": 2180.0,
              "auto_lower": 1903.605,
              "auto_upper": 2162.58,
              "refseq_lower": 2050.025,
              "refseq_upper": 2177.35
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.21,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.21124999999999,
              "refseq_upper": 99.53999999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.23,
              "auto_lower": 0.0,
              "auto_upper": 0.09,
              "refseq_lower": 0.25,
              "refseq_upper": 1.2194999999999998
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 71000.0,
              "warn_upper": 634473.4,
              "source": "computed",
              "ml_lower": 59674.58,
              "ml_upper": 634473.4,
              "auto_lower": 59674.585,
              "auto_upper": 634473.405,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 90.0,
              "final_lower": null,
              "final_upper": 90.0,
              "warn_lower": 12.07,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 12.07,
              "ml_upper": 83.4,
              "auto_lower": 12.07,
              "auto_upper": 83.39500000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 169690.47,
              "warn_upper": 987845.81,
              "source": "computed",
              "ml_lower": 169690.47,
              "ml_upper": 987845.81,
              "auto_lower": 169690.47,
              "auto_upper": 987845.8100000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 108,
            "refseq_count": 6,
            "final_count": 108,
            "filtered_out_count": 0,
            "pass_count": 114,
            "warn_count": 9,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Streptococcus_pneumoniae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2400000.0,
              "final_lower": 1900000.0,
              "final_upper": 2400000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2200000.0,
              "source": "computed",
              "ml_lower": 1966616.46,
              "ml_upper": 2310574.0,
              "auto_lower": 1966616.46,
              "auto_upper": 2234856.4700000007,
              "refseq_lower": 1995021.9,
              "refseq_upper": 2293398.72
            },
            {
              "metric": "GC_Content",
              "lower": 39.38,
              "upper": 39.95,
              "final_lower": 39.38,
              "final_upper": 39.95,
              "warn_lower": 39.43,
              "warn_upper": 39.79,
              "source": "computed",
              "ml_lower": 39.382,
              "ml_upper": 39.9407,
              "auto_lower": 39.382023,
              "auto_upper": 39.8177,
              "refseq_lower": 39.434705,
              "refseq_upper": 39.909082
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2500.0,
              "final_lower": 1900.0,
              "final_upper": 2500.0,
              "warn_lower": 1900.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1961.0,
              "ml_upper": 2415.0,
              "auto_lower": 1961.0,
              "auto_upper": 2343.0,
              "refseq_lower": 2054.775,
              "refseq_upper": 2406.0299999999997
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.02,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.724,
              "refseq_upper": 99.78
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 2.73,
              "auto_lower": 0.02,
              "auto_upper": 0.85,
              "refseq_lower": 0.31,
              "refseq_upper": 1.9377999999999997
            },
            {
              "metric": "N50",
              "lower": 25000.0,
              "upper": null,
              "final_lower": 25000.0,
              "final_upper": null,
              "warn_lower": 33000.0,
              "warn_upper": 259422.43,
              "source": "computed",
              "ml_lower": 25319.76,
              "ml_upper": 259422.43,
              "auto_lower": 25319.760000000002,
              "auto_upper": 259422.43000000063,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 29.0,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 29.0,
              "ml_upper": 208.0,
              "auto_lower": 29.0,
              "auto_upper": 208.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 76973.92,
              "warn_upper": 614045.0,
              "source": "computed",
              "ml_lower": 76973.92,
              "ml_upper": 614045.0,
              "auto_lower": 76973.92,
              "auto_upper": 614045.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 111647,
            "refseq_count": 275,
            "final_count": 111647,
            "filtered_out_count": 0,
            "pass_count": 104825,
            "warn_count": 11315,
            "fail_count": 4309
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_pseudopneumoniae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2000000.0,
              "upper": 2400000.0,
              "final_lower": 2000000.0,
              "final_upper": 2400000.0,
              "warn_lower": 2100000.0,
              "warn_upper": 2400000.0,
              "source": "computed",
              "ml_lower": 2021588.46,
              "ml_upper": 2335725.7,
              "auto_lower": 2021588.46,
              "auto_upper": 2335725.6950000003,
              "refseq_lower": 2195458.0,
              "refseq_upper": 2195458.0
            },
            {
              "metric": "GC_Content",
              "lower": 39.51,
              "upper": 39.99,
              "final_lower": 39.51,
              "final_upper": 39.99,
              "warn_lower": 39.6,
              "warn_upper": 39.93,
              "source": "computed",
              "ml_lower": 39.5193,
              "ml_upper": 39.9845,
              "auto_lower": 39.5192665,
              "auto_upper": 39.9845305,
              "refseq_lower": 39.7907,
              "refseq_upper": 39.7907
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1900.0,
              "upper": 2500.0,
              "final_lower": 1900.0,
              "final_upper": 2500.0,
              "warn_lower": 2100.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 1966.06,
              "ml_upper": 2432.0,
              "auto_lower": 1966.06,
              "auto_upper": 2432.0,
              "refseq_lower": 2299.0,
              "refseq_upper": 2299.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.16,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 98.16,
              "refseq_upper": 98.16
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.74,
              "auto_lower": 0.01,
              "auto_upper": 0.7385000000000014,
              "refseq_lower": 0.3,
              "refseq_upper": 0.3
            },
            {
              "metric": "N50",
              "lower": 27000.0,
              "upper": null,
              "final_lower": 27000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 125390.66,
              "source": "computed",
              "ml_lower": 27945.87,
              "ml_upper": 125390.66,
              "auto_lower": 27945.87,
              "auto_upper": 125390.66000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 270.0,
              "final_lower": null,
              "final_upper": 270.0,
              "warn_lower": 59.08,
              "warn_upper": 230.0,
              "source": "computed",
              "ml_lower": 59.08,
              "ml_upper": 263.91,
              "auto_lower": 59.074999999999996,
              "auto_upper": 263.9100000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 89148.47,
              "warn_upper": 354485.24,
              "source": "computed",
              "ml_lower": 89148.47,
              "ml_upper": 354485.24,
              "auto_lower": 89148.47,
              "auto_upper": 354485.24000000034,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 804,
            "refseq_count": 1,
            "final_count": 804,
            "filtered_out_count": 0,
            "pass_count": 727,
            "warn_count": 67,
            "fail_count": 69
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_pyogenes": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1600000.0,
              "upper": 2100000.0,
              "final_lower": 1600000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1700000.0,
              "warn_upper": 2000000.0,
              "source": "computed",
              "ml_lower": 1685325.54,
              "ml_upper": 2067793.0,
              "auto_lower": 1685325.535,
              "auto_upper": 1948555.5900000003,
              "refseq_lower": 1709487.06,
              "refseq_upper": 2038025.1299999994
            },
            {
              "metric": "GC_Content",
              "lower": 38.08,
              "upper": 38.69,
              "final_lower": 38.08,
              "final_upper": 38.69,
              "warn_lower": 38.14,
              "warn_upper": 38.45,
              "source": "computed",
              "ml_lower": 38.0836,
              "ml_upper": 38.688,
              "auto_lower": 38.0835685,
              "auto_upper": 38.471,
              "refseq_lower": 38.243117500000004,
              "refseq_upper": 38.651594499999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1500.0,
              "upper": 2100.0,
              "final_lower": 1500.0,
              "final_upper": 2100.0,
              "warn_lower": 1600.0,
              "warn_upper": 2000.0,
              "source": "computed",
              "ml_lower": 1579.0,
              "ml_upper": 2094.0,
              "auto_lower": 1579.0,
              "auto_upper": 1950.0,
              "refseq_lower": 1668.0,
              "refseq_upper": 2085.06
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.61,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 97.68235,
              "refseq_upper": 99.78
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 2.75,
              "auto_lower": 0.01,
              "auto_upper": 0.68,
              "refseq_lower": 0.03,
              "refseq_upper": 2.7179999999999995
            },
            {
              "metric": "N50",
              "lower": 57000.0,
              "upper": null,
              "final_lower": 57000.0,
              "final_upper": null,
              "warn_lower": 77000.0,
              "warn_upper": 289318.0,
              "source": "computed",
              "ml_lower": 57237.74,
              "ml_upper": 289318.0,
              "auto_lower": 57237.74,
              "auto_upper": 289318.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 100.0,
              "final_lower": null,
              "final_upper": 100.0,
              "warn_lower": 18.0,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 18.0,
              "ml_upper": 92.0,
              "auto_lower": 18.0,
              "auto_upper": 92.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 136758.89,
              "warn_upper": 751711.0,
              "source": "computed",
              "ml_lower": 136758.89,
              "ml_upper": 751711.0,
              "auto_lower": 136758.895,
              "auto_upper": 751711.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 42738,
            "refseq_count": 448,
            "final_count": 42738,
            "filtered_out_count": 0,
            "pass_count": 39716,
            "warn_count": 4181,
            "fail_count": 1952
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptococcus_salivarius": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2600000.0,
              "final_lower": 1900000.0,
              "final_upper": 2600000.0,
              "warn_lower": 2000000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 1999501.0,
              "ml_upper": 2564378.0,
              "auto_lower": 2056384.16,
              "auto_upper": 2429848.04,
              "refseq_lower": 2024365.315,
              "refseq_upper": 2544503.6
            },
            {
              "metric": "GC_Content",
              "lower": 39.3,
              "upper": 40.25,
              "final_lower": 39.3,
              "final_upper": 40.25,
              "warn_lower": 39.34,
              "warn_upper": 40.06,
              "source": "computed",
              "ml_lower": 39.3089,
              "ml_upper": 40.2441,
              "auto_lower": 39.308887999999996,
              "auto_upper": 40.101184,
              "refseq_lower": 39.436953499999994,
              "refseq_upper": 40.238171
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2500.0,
              "final_lower": 1800.0,
              "final_upper": 2500.0,
              "warn_lower": 1800.0,
              "warn_upper": 2300.0,
              "source": "computed",
              "ml_lower": 1876.04,
              "ml_upper": 2494.0,
              "auto_lower": 1876.04,
              "auto_upper": 2262.08,
              "refseq_lower": 1948.92,
              "refseq_upper": 2469.9900000000002
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.91,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 93.98105,
              "refseq_upper": 99.3814
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 8.0,
              "final_lower": null,
              "final_upper": 8.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 7.56,
              "auto_lower": 0.01,
              "auto_upper": 0.8063999999999999,
              "refseq_lower": 0.55,
              "refseq_upper": 7.349300000000002
            },
            {
              "metric": "N50",
              "lower": 55000.0,
              "upper": null,
              "final_lower": 55000.0,
              "final_upper": null,
              "warn_lower": 65000.0,
              "warn_upper": 326360.24,
              "source": "computed",
              "ml_lower": 55166.0,
              "ml_upper": 326360.24,
              "auto_lower": 55166.0,
              "auto_upper": 326360.2399999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 110.0,
              "final_lower": null,
              "final_upper": 110.0,
              "warn_lower": 26.88,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 26.88,
              "ml_upper": 108.8,
              "auto_lower": 26.88,
              "auto_upper": 108.79999999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 128520.44,
              "warn_upper": 665781.52,
              "source": "computed",
              "ml_lower": 128520.44,
              "ml_upper": 665781.52,
              "auto_lower": 128520.44,
              "auto_upper": 665781.5199999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 169,
            "refseq_count": 50,
            "final_count": 169,
            "filtered_out_count": 0,
            "pass_count": 159,
            "warn_count": 15,
            "fail_count": 7
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Streptococcus_suis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1900000.0,
              "upper": 2700000.0,
              "final_lower": 1900000.0,
              "final_upper": 2700000.0,
              "warn_lower": 1900000.0,
              "warn_upper": 2500000.0,
              "source": "computed",
              "ml_lower": 1913862.62,
              "ml_upper": 2626999.0,
              "auto_lower": 1913862.625,
              "auto_upper": 2513218.0749999997,
              "refseq_lower": 1979265.695,
              "refseq_upper": 2575482.7999999993
            },
            {
              "metric": "GC_Content",
              "lower": 39.29,
              "upper": 43.69,
              "final_lower": 39.29,
              "final_upper": 43.69,
              "warn_lower": 39.57,
              "warn_upper": 42.16,
              "source": "computed",
              "ml_lower": 39.2996,
              "ml_upper": 43.6849,
              "auto_lower": 39.2995925,
              "auto_upper": 43.679472499999996,
              "refseq_lower": 40.8435645,
              "refseq_upper": 41.845585499999984
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1800.0,
              "upper": 2700.0,
              "final_lower": 1800.0,
              "final_upper": 2700.0,
              "warn_lower": 1800.0,
              "warn_upper": 2500.0,
              "source": "computed",
              "ml_lower": 1860.0,
              "ml_upper": 2643.0,
              "auto_lower": 1860.0,
              "auto_upper": 2547.0,
              "refseq_lower": 1922.895,
              "refseq_upper": 2539.179999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.2,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 93.58485,
              "refseq_upper": 99.88
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.42,
              "auto_lower": 0.0,
              "auto_upper": 0.5,
              "refseq_lower": 0.09,
              "refseq_upper": 4.313199999999998
            },
            {
              "metric": "N50",
              "lower": 20000.0,
              "upper": null,
              "final_lower": 20000.0,
              "final_upper": null,
              "warn_lower": 28000.0,
              "warn_upper": 222876.12,
              "source": "computed",
              "ml_lower": 20929.78,
              "ml_upper": 222876.12,
              "auto_lower": 20929.775,
              "auto_upper": 222876.125,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 280.0,
              "final_lower": null,
              "final_upper": 280.0,
              "warn_lower": 29.22,
              "warn_upper": 240.0,
              "source": "computed",
              "ml_lower": 29.22,
              "ml_upper": 278.0,
              "auto_lower": 29.225,
              "auto_upper": 278.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 65175.98,
              "warn_upper": 477161.12,
              "source": "computed",
              "ml_lower": 65175.98,
              "ml_upper": 477161.12,
              "auto_lower": 65175.975,
              "auto_upper": 477161.1249999999,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 5046,
            "refseq_count": 180,
            "final_count": 5046,
            "filtered_out_count": 0,
            "pass_count": 4655,
            "warn_count": 571,
            "fail_count": 234
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Streptococcus_uberis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1700000.0,
              "upper": 2100000.0,
              "final_lower": 1700000.0,
              "final_upper": 2100000.0,
              "warn_lower": 1800000.0,
              "warn_upper": 2100000.0,
              "source": "computed",
              "ml_lower": 1797421.35,
              "ml_upper": 2089737.25,
              "auto_lower": 1797421.35,
              "auto_upper": 2089737.2500000002,
              "refseq_lower": 1852524.35,
              "refseq_upper": 2023535.04
            },
            {
              "metric": "GC_Content",
              "lower": 36.11,
              "upper": 36.69,
              "final_lower": 36.11,
              "final_upper": 36.69,
              "warn_lower": 36.17,
              "warn_upper": 36.6,
              "source": "computed",
              "ml_lower": 36.116,
              "ml_upper": 36.6801,
              "auto_lower": 36.115995,
              "auto_upper": 36.646205,
              "refseq_lower": 36.529409,
              "refseq_upper": 36.679375500000006
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1700.0,
              "upper": 2100.0,
              "final_lower": 1700.0,
              "final_upper": 2100.0,
              "warn_lower": 1700.0,
              "warn_upper": 2100.0,
              "source": "computed",
              "ml_lower": 1765.85,
              "ml_upper": 2097.6,
              "auto_lower": 1765.85,
              "auto_upper": 2097.6000000000004,
              "refseq_lower": 1882.015,
              "refseq_upper": 2024.52
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.1,
              "ml_upper": 100.0,
              "auto_lower": 99.97,
              "auto_upper": 100.0,
              "refseq_lower": 98.11394999999999,
              "refseq_upper": 99.61
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.16,
              "auto_lower": 0.0,
              "auto_upper": 0.3215000000000009,
              "refseq_lower": 1.16,
              "refseq_upper": 1.16
            },
            {
              "metric": "N50",
              "lower": 34000.0,
              "upper": null,
              "final_lower": 34000.0,
              "final_upper": null,
              "warn_lower": 95000.0,
              "warn_upper": 1052279.1,
              "source": "computed",
              "ml_lower": 34062.0,
              "ml_upper": 1052279.1,
              "auto_lower": 34062.0,
              "auto_upper": 1052279.1,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 120.0,
              "final_lower": null,
              "final_upper": 120.0,
              "warn_lower": 10.85,
              "warn_upper": 80.0,
              "source": "computed",
              "ml_lower": 10.85,
              "ml_upper": 119.0,
              "auto_lower": 10.850000000000001,
              "auto_upper": 119.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 102974.9,
              "warn_upper": 1052279.1,
              "source": "computed",
              "ml_lower": 102974.9,
              "ml_upper": 1052279.1,
              "auto_lower": 102974.9,
              "auto_upper": 1052279.1,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1371,
            "refseq_count": 4,
            "final_count": 1371,
            "filtered_out_count": 0,
            "pass_count": 1298,
            "warn_count": 104,
            "fail_count": 126
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptomyces_albidoflavus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 6300000.0,
              "upper": 7500000.0,
              "final_lower": 6300000.0,
              "final_upper": 7500000.0,
              "warn_lower": 6700000.0,
              "warn_upper": 7400000.0,
              "source": "computed",
              "ml_lower": 6341040.0,
              "ml_upper": 7493909.45,
              "auto_lower": 6611095.26,
              "auto_upper": 7493909.45,
              "refseq_lower": 6418490.13,
              "refseq_upper": 7354725.7
            },
            {
              "metric": "GC_Content",
              "lower": 73.01,
              "upper": 73.56,
              "final_lower": 73.01,
              "final_upper": 73.56,
              "warn_lower": 73.06,
              "warn_upper": 73.53,
              "source": "computed",
              "ml_lower": 73.0128,
              "ml_upper": 73.5569,
              "auto_lower": 73.012795,
              "auto_upper": 73.55687900000001,
              "refseq_lower": 73.04443,
              "refseq_upper": 73.501464
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5700.0,
              "upper": 6900.0,
              "final_lower": 5700.0,
              "final_upper": 6900.0,
              "warn_lower": 5800.0,
              "warn_upper": 6700.0,
              "source": "computed",
              "ml_lower": 5789.0,
              "ml_upper": 6814.54,
              "auto_lower": 5807.885,
              "auto_upper": 6814.54,
              "refseq_lower": 5815.18,
              "refseq_upper": 6455.05
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.19,
              "ml_upper": 100.0,
              "auto_lower": 99.73355000000001,
              "auto_upper": 100.0,
              "refseq_lower": 97.4739,
              "refseq_upper": 99.53
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.42,
              "auto_lower": 0.0,
              "auto_upper": 1.1728500000000006,
              "refseq_lower": 0.13,
              "refseq_upper": 1.42
            },
            {
              "metric": "N50",
              "lower": 10000.0,
              "upper": null,
              "final_lower": 10000.0,
              "final_upper": null,
              "warn_lower": 12000.0,
              "warn_upper": 642191.26,
              "source": "computed",
              "ml_lower": 10261.28,
              "ml_upper": 642191.26,
              "auto_lower": 10261.28,
              "auto_upper": 642191.26,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 1260.0,
              "final_lower": null,
              "final_upper": 1260.0,
              "warn_lower": 46.22,
              "warn_upper": 990.0,
              "source": "computed",
              "ml_lower": 46.22,
              "ml_upper": 1254.84,
              "auto_lower": 46.225,
              "auto_upper": 1254.835,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 53791.08,
              "warn_upper": 1323353.4,
              "source": "computed",
              "ml_lower": 53791.08,
              "ml_upper": 1323353.4,
              "auto_lower": 53791.08,
              "auto_upper": 1323353.4000000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 170,
            "refseq_count": 35,
            "final_count": 170,
            "filtered_out_count": 0,
            "pass_count": 156,
            "warn_count": 16,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Streptomyces_anthocyanicus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 8100000.0,
              "upper": 9100000.0,
              "final_lower": 8100000.0,
              "final_upper": 9100000.0,
              "warn_lower": 8400000.0,
              "warn_upper": 8900000.0,
              "source": "computed",
              "ml_lower": 8144841.74,
              "ml_upper": 9076858.0,
              "auto_lower": 8144841.735,
              "auto_upper": 8901430.8,
              "refseq_lower": 8508668.725,
              "refseq_upper": 9076576.675
            },
            {
              "metric": "GC_Content",
              "lower": 71.95,
              "upper": 72.27,
              "final_lower": 71.95,
              "final_upper": 72.27,
              "warn_lower": 72.07,
              "warn_upper": 72.23,
              "source": "computed",
              "ml_lower": 71.9525,
              "ml_upper": 72.2666,
              "auto_lower": 72.04413,
              "auto_upper": 72.26662900000001,
              "refseq_lower": 71.9533325,
              "refseq_upper": 72.1928975
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 7300.0,
              "upper": 8400.0,
              "final_lower": 7300.0,
              "final_upper": 8400.0,
              "warn_lower": 7600.0,
              "warn_upper": 8100.0,
              "source": "computed",
              "ml_lower": 7371.44,
              "ml_upper": 8328.0,
              "auto_lower": 7371.435,
              "auto_upper": 8078.765,
              "refseq_lower": 7706.225,
              "refseq_upper": 8321.3
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 100.0,
              "refseq_upper": 100.0
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 0.45,
              "auto_lower": 0.0,
              "auto_upper": 0.4492499999999994,
              "refseq_lower": 0.0906,
              "refseq_upper": 0.4461
            },
            {
              "metric": "N50",
              "lower": 32000.0,
              "upper": null,
              "final_lower": 32000.0,
              "final_upper": null,
              "warn_lower": 52000.0,
              "warn_upper": 406808.55,
              "source": "computed",
              "ml_lower": 32859.2,
              "ml_upper": 406808.55,
              "auto_lower": 32859.2,
              "auto_upper": 406808.55,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 570.0,
              "final_lower": null,
              "final_upper": 570.0,
              "warn_lower": 94.6,
              "warn_upper": 350.0,
              "source": "computed",
              "ml_lower": 94.6,
              "ml_upper": 565.0,
              "auto_lower": 94.605,
              "auto_upper": 565.0049999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 152651.44,
              "warn_upper": 988894.6,
              "source": "computed",
              "ml_lower": 152651.44,
              "ml_upper": 988894.6,
              "auto_lower": 152651.435,
              "auto_upper": 988894.5999999995,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 122,
            "refseq_count": 6,
            "final_count": 122,
            "filtered_out_count": 0,
            "pass_count": 110,
            "warn_count": 12,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Stutzerimonas_stutzeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4200000.0,
              "upper": 5100000.0,
              "final_lower": 4200000.0,
              "final_upper": 5100000.0,
              "warn_lower": 4300000.0,
              "warn_upper": 5100000.0,
              "source": "computed",
              "ml_lower": 4205356.0,
              "ml_upper": 5066586.0,
              "auto_lower": 4311421.0,
              "auto_upper": 5044852.75,
              "refseq_lower": 4221908.99,
              "refseq_upper": 5059813.26
            },
            {
              "metric": "GC_Content",
              "lower": 59.67,
              "upper": 64.34,
              "final_lower": 59.67,
              "final_upper": 64.34,
              "warn_lower": 62.65,
              "warn_upper": 64.18,
              "source": "computed",
              "ml_lower": 59.6737,
              "ml_upper": 64.3314,
              "auto_lower": 61.317875,
              "auto_upper": 64.238925,
              "refseq_lower": 59.681737,
              "refseq_upper": 64.324978
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4800.0,
              "final_lower": 3900.0,
              "final_upper": 4800.0,
              "warn_lower": 4000.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 3985.25,
              "ml_upper": 4775.5,
              "auto_lower": 3985.25,
              "auto_upper": 4775.5,
              "refseq_lower": 3999.85,
              "refseq_upper": 4690.15
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.89,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 96.0667,
              "refseq_upper": 99.81
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.53,
              "auto_lower": 0.0,
              "auto_upper": 1.3599999999999999,
              "refseq_lower": 0.02,
              "refseq_upper": 2.267800000000003
            },
            {
              "metric": "N50",
              "lower": 112000.0,
              "upper": null,
              "final_lower": 112000.0,
              "final_upper": null,
              "warn_lower": 135000.0,
              "warn_upper": 673405.0,
              "source": "computed",
              "ml_lower": 112976.5,
              "ml_upper": 673405.0,
              "auto_lower": 112976.5,
              "auto_upper": 673405.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 240.0,
              "final_lower": null,
              "final_upper": 240.0,
              "warn_lower": 23.25,
              "warn_upper": 170.0,
              "source": "computed",
              "ml_lower": 23.25,
              "ml_upper": 230.75,
              "auto_lower": 23.25,
              "auto_upper": 230.75,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 275978.75,
              "warn_upper": 1096839.5,
              "source": "computed",
              "ml_lower": 275978.75,
              "ml_upper": 1096839.5,
              "auto_lower": 275978.75,
              "auto_upper": 1096839.5,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 251,
            "refseq_count": 39,
            "final_count": 251,
            "filtered_out_count": 0,
            "pass_count": 232,
            "warn_count": 25,
            "fail_count": 12
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Taylorella_equigenitalis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1600000.0,
              "upper": 1800000.0,
              "final_lower": 1600000.0,
              "final_upper": 1800000.0,
              "warn_lower": 1600000.0,
              "warn_upper": 1700000.0,
              "source": "computed",
              "ml_lower": 1615015.0,
              "ml_upper": 1739054.0,
              "auto_lower": 1615015.0,
              "auto_upper": 1711338.4,
              "refseq_lower": 1638835.0,
              "refseq_upper": 1737351.25
            },
            {
              "metric": "GC_Content",
              "lower": 37.28,
              "upper": 37.59,
              "final_lower": 37.28,
              "final_upper": 37.59,
              "warn_lower": 37.36,
              "warn_upper": 37.52,
              "source": "computed",
              "ml_lower": 37.2883,
              "ml_upper": 37.5865,
              "auto_lower": 37.28828,
              "auto_upper": 37.520812,
              "refseq_lower": 37.321175,
              "refseq_upper": 37.58095
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1400.0,
              "upper": 1700.0,
              "final_lower": 1400.0,
              "final_upper": 1700.0,
              "warn_lower": 1400.0,
              "warn_upper": 1600.0,
              "source": "computed",
              "ml_lower": 1481.97,
              "ml_upper": 1631.0,
              "auto_lower": 1481.97,
              "auto_upper": 1607.06,
              "refseq_lower": 1519.0,
              "refseq_upper": 1631.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.93,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 93.97,
              "refseq_upper": 99.29499999999999
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.02,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.02,
              "ml_upper": 8.41,
              "auto_lower": 0.02,
              "auto_upper": 0.060300000000000006,
              "refseq_lower": 4.65,
              "refseq_upper": 8.1925
            },
            {
              "metric": "N50",
              "lower": 143000.0,
              "upper": null,
              "final_lower": 143000.0,
              "final_upper": null,
              "warn_lower": 207000.0,
              "warn_upper": 439476.06,
              "source": "computed",
              "ml_lower": 143340.94,
              "ml_upper": 439476.06,
              "auto_lower": 143340.94,
              "auto_upper": 439476.06,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 50.0,
              "final_lower": null,
              "final_upper": 50.0,
              "warn_lower": 12.97,
              "warn_upper": 50.0,
              "source": "computed",
              "ml_lower": 12.97,
              "ml_upper": 47.09,
              "auto_lower": 12.97,
              "auto_upper": 47.09,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 309686.62,
              "warn_upper": 463237.47,
              "source": "computed",
              "ml_lower": 309686.62,
              "ml_upper": 463237.47,
              "auto_lower": 309686.62,
              "auto_upper": 463237.47,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 195,
            "refseq_count": 51,
            "final_count": 195,
            "filtered_out_count": 0,
            "pass_count": 189,
            "warn_count": 18,
            "fail_count": 22
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Treponema_pallidum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1000000.0,
              "upper": 1500000.0,
              "final_lower": 1000000.0,
              "final_upper": 1500000.0,
              "warn_lower": 1100000.0,
              "warn_upper": 1400000.0,
              "source": "computed",
              "ml_lower": 1020185.72,
              "ml_upper": 1438551.44,
              "auto_lower": 1020185.72,
              "auto_upper": 1438551.4400000002,
              "refseq_lower": 1138052.31,
              "refseq_upper": 1141221.49
            },
            {
              "metric": "GC_Content",
              "lower": 51.54,
              "upper": 52.91,
              "final_lower": 51.54,
              "final_upper": 52.91,
              "warn_lower": 52.03,
              "warn_upper": 52.79,
              "source": "computed",
              "ml_lower": 51.5496,
              "ml_upper": 52.9066,
              "auto_lower": 51.549636,
              "auto_upper": 52.906580000000005,
              "refseq_lower": 52.77605,
              "refseq_upper": 52.801953499999996
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 900.0,
              "upper": 1500.0,
              "final_lower": 900.0,
              "final_upper": 1500.0,
              "warn_lower": 1000.0,
              "warn_upper": 1400.0,
              "source": "computed",
              "ml_lower": 994.8,
              "ml_upper": 1451.92,
              "auto_lower": 994.8,
              "auto_upper": 1451.92,
              "refseq_lower": 1035.0,
              "refseq_upper": 1061.065
            },
            {
              "metric": "Completeness_Specific",
              "lower": 79.0,
              "upper": null,
              "final_lower": 79.0,
              "final_upper": null,
              "warn_lower": 87.0,
              "warn_upper": 99.67,
              "source": "computed",
              "ml_lower": 79.99,
              "ml_upper": 99.67,
              "auto_lower": 79.9912,
              "auto_upper": 99.6724,
              "refseq_lower": 96.999,
              "refseq_upper": 99.66
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.03,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 1.9,
              "auto_lower": 0.025200000000000004,
              "auto_upper": 1.8996000000000002,
              "refseq_lower": 1.0089,
              "refseq_upper": 1.44
            },
            {
              "metric": "N50",
              "lower": 6000.0,
              "upper": null,
              "final_lower": 6000.0,
              "final_upper": null,
              "warn_lower": 14000.0,
              "warn_upper": 599003.88,
              "source": "computed",
              "ml_lower": 6894.72,
              "ml_upper": 599003.88,
              "auto_lower": 6894.72,
              "auto_upper": 599003.88,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 570.0,
              "final_lower": null,
              "final_upper": 570.0,
              "warn_lower": 22.0,
              "warn_upper": 360.0,
              "source": "computed",
              "ml_lower": 22.0,
              "ml_upper": 563.0,
              "auto_lower": 22.0,
              "auto_upper": 563.0000000000014,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 27662.04,
              "warn_upper": 599057.96,
              "source": "computed",
              "ml_lower": 27662.04,
              "ml_upper": 599057.96,
              "auto_lower": 27662.04,
              "auto_upper": 599057.96,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 553,
            "refseq_count": 18,
            "final_count": 553,
            "filtered_out_count": 0,
            "pass_count": 498,
            "warn_count": 45,
            "fail_count": 73
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "frac_incomplete",
                  "flag": "error",
                  "fraction": 0.1284,
                  "count": 71,
                  "n": 553,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Turicibacter_sanguinis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2900000.0,
              "upper": 3300000.0,
              "final_lower": 2900000.0,
              "final_upper": 3300000.0,
              "warn_lower": 2900000.0,
              "warn_upper": 3200000.0,
              "source": "computed",
              "ml_lower": 2903405.69,
              "ml_upper": 3214385.36,
              "auto_lower": 2903405.69,
              "auto_upper": 3214385.36,
              "refseq_lower": 2999687.0,
              "refseq_upper": 2999687.0
            },
            {
              "metric": "GC_Content",
              "lower": 34.03,
              "upper": 34.38,
              "final_lower": 34.03,
              "final_upper": 34.38,
              "warn_lower": 34.03,
              "warn_upper": 34.27,
              "source": "computed",
              "ml_lower": 34.038,
              "ml_upper": 34.3733,
              "auto_lower": 34.038025,
              "auto_upper": 34.289123,
              "refseq_lower": 34.3733,
              "refseq_upper": 34.3733
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2700.0,
              "upper": 3200.0,
              "final_lower": 2700.0,
              "final_upper": 3200.0,
              "warn_lower": 2700.0,
              "warn_upper": 3200.0,
              "source": "computed",
              "ml_lower": 2753.12,
              "ml_upper": 3188.22,
              "auto_lower": 2753.12,
              "auto_upper": 3188.22,
              "refseq_lower": 2919.0,
              "refseq_upper": 2919.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.65,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.65,
              "refseq_upper": 95.65
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.13,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.13,
              "ml_upper": 3.29,
              "auto_lower": 0.1278,
              "auto_upper": 1.7995999999999948,
              "refseq_lower": 3.29,
              "refseq_upper": 3.29
            },
            {
              "metric": "N50",
              "lower": 11000.0,
              "upper": null,
              "final_lower": 11000.0,
              "final_upper": null,
              "warn_lower": 16000.0,
              "warn_upper": 134532.38,
              "source": "computed",
              "ml_lower": 11923.69,
              "ml_upper": 134532.38,
              "auto_lower": 11923.69,
              "auto_upper": 134532.37999999977,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 560.0,
              "final_lower": null,
              "final_upper": 560.0,
              "warn_lower": 69.0,
              "warn_upper": 400.0,
              "source": "computed",
              "ml_lower": 69.0,
              "ml_upper": 556.76,
              "auto_lower": 69.0,
              "auto_upper": 556.7599999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 76638.75,
              "warn_upper": 312392.24,
              "source": "computed",
              "ml_lower": 76638.75,
              "ml_upper": 312392.24,
              "auto_lower": 76638.75,
              "auto_upper": 312392.24,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 179,
            "refseq_count": 1,
            "final_count": 179,
            "filtered_out_count": 0,
            "pass_count": 165,
            "warn_count": 14,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Vibrio_alginolyticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4800000.0,
              "upper": 5800000.0,
              "final_lower": 4800000.0,
              "final_upper": 5800000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 4895483.0,
              "ml_upper": 5724939.0,
              "auto_lower": 5017631.965,
              "auto_upper": 5446324.26,
              "refseq_lower": 4952184.545,
              "refseq_upper": 5711972.505
            },
            {
              "metric": "GC_Content",
              "lower": 44.29,
              "upper": 44.83,
              "final_lower": 44.29,
              "final_upper": 44.83,
              "warn_lower": 44.43,
              "warn_upper": 44.67,
              "source": "computed",
              "ml_lower": 44.2982,
              "ml_upper": 44.8266,
              "auto_lower": 44.379248000000004,
              "auto_upper": 44.710736000000004,
              "refseq_lower": 44.2998065,
              "refseq_upper": 44.820786
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 5300.0,
              "final_lower": 4400.0,
              "final_upper": 5300.0,
              "warn_lower": 4500.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 4483.0,
              "ml_upper": 5296.0,
              "auto_lower": 4507.495,
              "auto_upper": 4999.605,
              "refseq_lower": 4522.525,
              "refseq_upper": 5277.385
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.05,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.24889999999999,
              "refseq_upper": 99.6
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.76,
              "auto_lower": 0.0,
              "auto_upper": 0.47,
              "refseq_lower": 0.6404,
              "refseq_upper": 3.7497999999999996
            },
            {
              "metric": "N50",
              "lower": 77000.0,
              "upper": null,
              "final_lower": 77000.0,
              "final_upper": null,
              "warn_lower": 92000.0,
              "warn_upper": 817478.14,
              "source": "computed",
              "ml_lower": 77168.1,
              "ml_upper": 817478.14,
              "auto_lower": 77168.1,
              "auto_upper": 817478.1399999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 220.0,
              "final_lower": null,
              "final_upper": 220.0,
              "warn_lower": 67.99,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 67.99,
              "ml_upper": 217.5,
              "auto_lower": 67.99,
              "auto_upper": 217.505,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 235263.64,
              "warn_upper": 1858166.12,
              "source": "computed",
              "ml_lower": 235263.64,
              "ml_upper": 1858166.12,
              "auto_lower": 235263.645,
              "auto_upper": 1858166.12,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 500,
            "refseq_count": 52,
            "final_count": 500,
            "filtered_out_count": 0,
            "pass_count": 476,
            "warn_count": 46,
            "fail_count": 18
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Vibrio_anguillarum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3800000.0,
              "upper": 4900000.0,
              "final_lower": 3800000.0,
              "final_upper": 4900000.0,
              "warn_lower": 3800000.0,
              "warn_upper": 4400000.0,
              "source": "computed",
              "ml_lower": 3815753.9,
              "ml_upper": 4897690.0,
              "auto_lower": 3815753.9,
              "auto_upper": 4500058.149999999,
              "refseq_lower": 4018634.15,
              "refseq_upper": 4871581.075
            },
            {
              "metric": "GC_Content",
              "lower": 44.18,
              "upper": 44.73,
              "final_lower": 44.18,
              "final_upper": 44.73,
              "warn_lower": 44.23,
              "warn_upper": 44.64,
              "source": "computed",
              "ml_lower": 44.1811,
              "ml_upper": 44.725,
              "auto_lower": 44.181105,
              "auto_upper": 44.724995,
              "refseq_lower": 44.3596575,
              "refseq_upper": 44.685355
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4600.0,
              "final_lower": 3400.0,
              "final_upper": 4600.0,
              "warn_lower": 3500.0,
              "warn_upper": 4100.0,
              "source": "computed",
              "ml_lower": 3415.4,
              "ml_upper": 4586.0,
              "auto_lower": 3415.4,
              "auto_upper": 4281.5,
              "refseq_lower": 3603.45,
              "refseq_upper": 4565.375
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.89,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 96.995,
              "refseq_upper": 99.7955
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 1.23,
              "auto_lower": 0.0,
              "auto_upper": 0.7004999999999998,
              "refseq_lower": 0.04,
              "refseq_upper": 1.22925
            },
            {
              "metric": "N50",
              "lower": 33000.0,
              "upper": null,
              "final_lower": 33000.0,
              "final_upper": null,
              "warn_lower": 35000.0,
              "warn_upper": 408958.45,
              "source": "computed",
              "ml_lower": 33629.95,
              "ml_upper": 408958.45,
              "auto_lower": 33629.95,
              "auto_upper": 408958.4499999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 340.0,
              "final_lower": null,
              "final_upper": 340.0,
              "warn_lower": 85.2,
              "warn_upper": 310.0,
              "source": "computed",
              "ml_lower": 85.2,
              "ml_upper": 339.65,
              "auto_lower": 85.2,
              "auto_upper": 339.64999999999964,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 99524.0,
              "warn_upper": 798807.6,
              "source": "computed",
              "ml_lower": 99524.0,
              "ml_upper": 798807.6,
              "auto_lower": 99524.0,
              "auto_upper": 798807.5999999989,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 131,
            "refseq_count": 16,
            "final_count": 131,
            "filtered_out_count": 0,
            "pass_count": 119,
            "warn_count": 13,
            "fail_count": 14
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Vibrio_cholerae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3800000.0,
              "upper": 4500000.0,
              "final_lower": 3800000.0,
              "final_upper": 4500000.0,
              "warn_lower": 3900000.0,
              "warn_upper": 4200000.0,
              "source": "computed",
              "ml_lower": 3853630.26,
              "ml_upper": 4476429.0,
              "auto_lower": 3853630.26,
              "auto_upper": 4234368.32,
              "refseq_lower": 3920261.5,
              "refseq_upper": 4476032.625
            },
            {
              "metric": "GC_Content",
              "lower": 47.09,
              "upper": 47.81,
              "final_lower": 47.09,
              "final_upper": 47.81,
              "warn_lower": 47.36,
              "warn_upper": 47.69,
              "source": "computed",
              "ml_lower": 47.0911,
              "ml_upper": 47.806,
              "auto_lower": 47.202555999999994,
              "auto_upper": 47.752155,
              "refseq_lower": 47.092325,
              "refseq_upper": 47.7829875
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3400.0,
              "upper": 4200.0,
              "final_lower": 3400.0,
              "final_upper": 4200.0,
              "warn_lower": 3400.0,
              "warn_upper": 3800.0,
              "source": "computed",
              "ml_lower": 3422.0,
              "ml_upper": 4183.0,
              "auto_lower": 3422.0,
              "auto_upper": 3852.0,
              "refseq_lower": 3560.625,
              "refseq_upper": 4183.0
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.72,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 95.77250000000001,
              "refseq_upper": 99.64
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.91,
              "auto_lower": 0.0,
              "auto_upper": 0.33,
              "refseq_lower": 0.21875,
              "refseq_upper": 4.69125
            },
            {
              "metric": "N50",
              "lower": 81000.0,
              "upper": null,
              "final_lower": 81000.0,
              "final_upper": null,
              "warn_lower": 108000.0,
              "warn_upper": 555239.11,
              "source": "computed",
              "ml_lower": 81709.2,
              "ml_upper": 555239.11,
              "auto_lower": 81709.2,
              "auto_upper": 555239.11,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 62.0,
              "warn_upper": 180.0,
              "source": "computed",
              "ml_lower": 62.0,
              "ml_upper": 221.0,
              "auto_lower": 62.0,
              "auto_upper": 221.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 244691.85,
              "warn_upper": 931391.3,
              "source": "computed",
              "ml_lower": 244691.85,
              "ml_upper": 931391.3,
              "auto_lower": 244691.85,
              "auto_upper": 931391.3000000002,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 11979,
            "refseq_count": 176,
            "final_count": 11979,
            "filtered_out_count": 0,
            "pass_count": 11080,
            "warn_count": 1411,
            "fail_count": 558
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Vibrio_diabolicus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 5600000.0,
              "final_lower": 4900000.0,
              "final_upper": 5600000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4984143.5,
              "ml_upper": 5502567.0,
              "auto_lower": 4984143.5,
              "auto_upper": 5401775.5600000005,
              "refseq_lower": 5109651.92,
              "refseq_upper": 5499128.415
            },
            {
              "metric": "GC_Content",
              "lower": 44.53,
              "upper": 44.95,
              "final_lower": 44.53,
              "final_upper": 44.95,
              "warn_lower": 44.62,
              "warn_upper": 44.92,
              "source": "computed",
              "ml_lower": 44.5343,
              "ml_upper": 44.9424,
              "auto_lower": 44.606274,
              "auto_upper": 44.942438,
              "refseq_lower": 44.546576,
              "refseq_upper": 44.903943500000004
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 5100.0,
              "final_lower": 4400.0,
              "final_upper": 5100.0,
              "warn_lower": 4400.0,
              "warn_upper": 4900.0,
              "source": "computed",
              "ml_lower": 4455.92,
              "ml_upper": 5012.0,
              "auto_lower": 4455.92,
              "auto_upper": 4921.8,
              "refseq_lower": 4640.63,
              "refseq_upper": 5011.19
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.66,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 97.7419,
              "refseq_upper": 99.99775
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.78,
              "auto_lower": 0.0,
              "auto_upper": 0.27480000000000077,
              "refseq_lower": 0.1204,
              "refseq_upper": 2.6931999999999996
            },
            {
              "metric": "N50",
              "lower": 104000.0,
              "upper": null,
              "final_lower": 104000.0,
              "final_upper": null,
              "warn_lower": 112000.0,
              "warn_upper": 883789.88,
              "source": "computed",
              "ml_lower": 104967.36,
              "ml_upper": 883789.88,
              "auto_lower": 104967.36,
              "auto_upper": 883789.8800000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 46.98,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 46.98,
              "ml_upper": 146.06,
              "auto_lower": 46.98,
              "auto_upper": 146.06000000000003,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 268226.6,
              "warn_upper": 1895565.4,
              "source": "computed",
              "ml_lower": 268226.6,
              "ml_upper": 1895565.4,
              "auto_lower": 268226.6,
              "auto_upper": 1895565.4000000001,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 133,
            "refseq_count": 10,
            "final_count": 133,
            "filtered_out_count": 0,
            "pass_count": 123,
            "warn_count": 12,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Vibrio_fluvialis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5400000.0,
              "final_lower": 4400000.0,
              "final_upper": 5400000.0,
              "warn_lower": 4500000.0,
              "warn_upper": 4900000.0,
              "source": "computed",
              "ml_lower": 4439266.72,
              "ml_upper": 5386988.0,
              "auto_lower": 4439266.72,
              "auto_upper": 4912444.24,
              "refseq_lower": 4644818.36,
              "refseq_upper": 5353180.56
            },
            {
              "metric": "GC_Content",
              "lower": 49.35,
              "upper": 50.33,
              "final_lower": 49.35,
              "final_upper": 50.33,
              "warn_lower": 49.77,
              "warn_upper": 50.27,
              "source": "computed",
              "ml_lower": 49.3524,
              "ml_upper": 50.321,
              "auto_lower": 49.690888,
              "auto_upper": 50.321024,
              "refseq_lower": 49.389232,
              "refseq_upper": 50.264964000000006
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5200.0,
              "final_lower": 4100.0,
              "final_upper": 5200.0,
              "warn_lower": 4200.0,
              "warn_upper": 4600.0,
              "source": "computed",
              "ml_lower": 4110.52,
              "ml_upper": 5126.0,
              "auto_lower": 4110.52,
              "auto_upper": 4643.24,
              "refseq_lower": 4331.96,
              "refseq_upper": 5087.36
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.03,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.2916,
              "refseq_upper": 99.9944
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.09,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.09,
              "ml_upper": 2.81,
              "auto_lower": 0.09,
              "auto_upper": 1.2040000000000004,
              "refseq_lower": 0.97,
              "refseq_upper": 2.7292
            },
            {
              "metric": "N50",
              "lower": 110000.0,
              "upper": null,
              "final_lower": 110000.0,
              "final_upper": null,
              "warn_lower": 133000.0,
              "warn_upper": 764088.88,
              "source": "computed",
              "ml_lower": 110954.64,
              "ml_upper": 764088.88,
              "auto_lower": 110954.64,
              "auto_upper": 764088.88,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 150.0,
              "final_lower": null,
              "final_upper": 150.0,
              "warn_lower": 36.32,
              "warn_upper": 140.0,
              "source": "computed",
              "ml_lower": 36.32,
              "ml_upper": 142.36,
              "auto_lower": 36.32,
              "auto_upper": 142.36,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 309572.56,
              "warn_upper": 1565858.36,
              "source": "computed",
              "ml_lower": 309572.56,
              "ml_upper": 1565858.36,
              "auto_lower": 309572.56,
              "auto_upper": 1565858.36,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 265,
            "refseq_count": 17,
            "final_count": 265,
            "filtered_out_count": 0,
            "pass_count": 244,
            "warn_count": 35,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Vibrio_mediterranei": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5700000.0,
              "upper": 6000000.0,
              "final_lower": 5700000.0,
              "final_upper": 6000000.0,
              "warn_lower": 5700000.0,
              "warn_upper": 5800000.0,
              "source": "computed",
              "ml_lower": 5708284.16,
              "ml_upper": 5976027.0,
              "auto_lower": 5708284.16,
              "auto_upper": 5766395.32,
              "refseq_lower": 5812995.255,
              "refseq_upper": 5975207.745
            },
            {
              "metric": "GC_Content",
              "lower": 43.99,
              "upper": 44.16,
              "final_lower": 43.99,
              "final_upper": 44.16,
              "warn_lower": 43.99,
              "warn_upper": 44.01,
              "source": "computed",
              "ml_lower": 43.9937,
              "ml_upper": 44.1559,
              "auto_lower": 43.993700999999994,
              "auto_upper": 44.005398,
              "refseq_lower": 44.037694,
              "refseq_upper": 44.155306
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 5200.0,
              "upper": 5600.0,
              "final_lower": 5200.0,
              "final_upper": 5600.0,
              "warn_lower": 5200.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 5212.0,
              "ml_upper": 5576.0,
              "auto_lower": 5212.005,
              "auto_upper": 5305.925,
              "refseq_lower": 5368.045,
              "refseq_upper": 5574.955
            },
            {
              "metric": "Completeness_Specific",
              "lower": 99.0,
              "upper": null,
              "final_lower": 99.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 99.53,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 99.53015,
              "refseq_upper": 99.55985
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.71,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.71,
              "ml_upper": 2.38,
              "auto_lower": 0.71,
              "auto_upper": 0.8097000000000003,
              "refseq_lower": 2.23075,
              "refseq_upper": 2.37925
            },
            {
              "metric": "N50",
              "lower": 412000.0,
              "upper": null,
              "final_lower": 412000.0,
              "final_upper": null,
              "warn_lower": 412000.0,
              "warn_upper": 548654.0,
              "source": "computed",
              "ml_lower": 412645.0,
              "ml_upper": 548654.0,
              "auto_lower": 412645.0,
              "auto_upper": 548654.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 140.0,
              "final_lower": null,
              "final_upper": 140.0,
              "warn_lower": 49.0,
              "warn_upper": 130.0,
              "source": "computed",
              "ml_lower": 49.0,
              "ml_upper": 132.0,
              "auto_lower": 49.005,
              "auto_upper": 131.995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 893491.08,
              "warn_upper": 994367.0,
              "source": "computed",
              "ml_lower": 893491.08,
              "ml_upper": 994367.0,
              "auto_lower": 893491.085,
              "auto_upper": 994367.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 202,
            "refseq_count": 2,
            "final_count": 202,
            "filtered_out_count": 0,
            "pass_count": 199,
            "warn_count": 3,
            "fail_count": 15
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Vibrio_metschnikovii": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3600000.0,
              "upper": 4100000.0,
              "final_lower": 3600000.0,
              "final_upper": 4100000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 4100000.0,
              "source": "computed",
              "ml_lower": 3620999.0,
              "ml_upper": 4073104.51,
              "auto_lower": 3650534.18,
              "auto_upper": 4073104.5100000002,
              "refseq_lower": 3623967.975,
              "refseq_upper": 4025105.125
            },
            {
              "metric": "GC_Content",
              "lower": 43.93,
              "upper": 44.45,
              "final_lower": 43.93,
              "final_upper": 44.45,
              "warn_lower": 43.94,
              "warn_upper": 44.37,
              "source": "computed",
              "ml_lower": 43.935,
              "ml_upper": 44.4439,
              "auto_lower": 43.935049,
              "auto_upper": 44.392882,
              "refseq_lower": 44.1254075,
              "refseq_upper": 44.44194
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3200.0,
              "upper": 3800.0,
              "final_lower": 3200.0,
              "final_upper": 3800.0,
              "warn_lower": 3200.0,
              "warn_upper": 3800.0,
              "source": "computed",
              "ml_lower": 3224.73,
              "ml_upper": 3751.89,
              "auto_lower": 3224.73,
              "auto_upper": 3751.89,
              "refseq_lower": 3294.3,
              "refseq_upper": 3720.025
            },
            {
              "metric": "Completeness_Specific",
              "lower": 95.0,
              "upper": null,
              "final_lower": 95.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 95.2,
              "ml_upper": 100.0,
              "auto_lower": 99.99,
              "auto_upper": 100.0,
              "refseq_lower": 95.2325,
              "refseq_upper": 97.03
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 1.24,
              "auto_lower": 0.0073,
              "auto_upper": 0.8027000000000002,
              "refseq_lower": 0.71775,
              "refseq_upper": 1.2385
            },
            {
              "metric": "N50",
              "lower": 74000.0,
              "upper": null,
              "final_lower": 74000.0,
              "final_upper": null,
              "warn_lower": 84000.0,
              "warn_upper": 507943.54,
              "source": "computed",
              "ml_lower": 74990.12,
              "ml_upper": 507943.54,
              "auto_lower": 74990.12,
              "auto_upper": 507943.5400000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 460.0,
              "final_lower": null,
              "final_upper": 460.0,
              "warn_lower": 100.38,
              "warn_upper": 350.0,
              "source": "computed",
              "ml_lower": 100.38,
              "ml_upper": 458.24,
              "auto_lower": 100.38,
              "auto_upper": 458.2400000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 232861.98,
              "warn_upper": 1097069.3,
              "source": "computed",
              "ml_lower": 232861.98,
              "ml_upper": 1097069.3,
              "auto_lower": 232861.98,
              "auto_upper": 1097069.3000000003,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 147,
            "refseq_count": 6,
            "final_count": 147,
            "filtered_out_count": 0,
            "pass_count": 143,
            "warn_count": 9,
            "fail_count": 11
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Vibrio_parahaemolyticus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4900000.0,
              "upper": 6100000.0,
              "final_lower": 4900000.0,
              "final_upper": 6100000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4941768.43,
              "ml_upper": 6093178.0,
              "auto_lower": 4941768.43,
              "auto_upper": 5461798.3,
              "refseq_lower": 5002004.26,
              "refseq_upper": 6014084.579999999
            },
            {
              "metric": "GC_Content",
              "lower": 44.06,
              "upper": 45.54,
              "final_lower": 44.06,
              "final_upper": 45.54,
              "warn_lower": 45.11,
              "warn_upper": 45.39,
              "source": "computed",
              "ml_lower": 44.0662,
              "ml_upper": 45.5355,
              "auto_lower": 45.029848,
              "auto_upper": 45.436141,
              "refseq_lower": 44.152632,
              "refseq_upper": 45.532613999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4400.0,
              "upper": 5900.0,
              "final_lower": 4400.0,
              "final_upper": 5900.0,
              "warn_lower": 4400.0,
              "warn_upper": 5000.0,
              "source": "computed",
              "ml_lower": 4447.02,
              "ml_upper": 5897.0,
              "auto_lower": 4447.02,
              "auto_upper": 5038.0,
              "refseq_lower": 4562.44,
              "refseq_upper": 5835.579999999999
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.27,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.3662,
              "refseq_upper": 99.91
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 7.0,
              "final_lower": null,
              "final_upper": 7.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 6.34,
              "auto_lower": 0.0,
              "auto_upper": 0.36,
              "refseq_lower": 0.5844,
              "refseq_upper": 5.2595999999999865
            },
            {
              "metric": "N50",
              "lower": 94000.0,
              "upper": null,
              "final_lower": 94000.0,
              "final_upper": null,
              "warn_lower": 132000.0,
              "warn_upper": 863504.88,
              "source": "computed",
              "ml_lower": 94027.96,
              "ml_upper": 863504.88,
              "auto_lower": 94027.96,
              "auto_upper": 863504.8799999992,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 170.0,
              "final_lower": null,
              "final_upper": 170.0,
              "warn_lower": 47.0,
              "warn_upper": 150.0,
              "source": "computed",
              "ml_lower": 47.0,
              "ml_upper": 169.98,
              "auto_lower": 47.0,
              "auto_upper": 169.97999999999956,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 285613.27,
              "warn_upper": 1836183.33,
              "source": "computed",
              "ml_lower": 285613.27,
              "ml_upper": 1836183.33,
              "auto_lower": 285613.27,
              "auto_upper": 1836183.3299999994,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 7503,
            "refseq_count": 149,
            "final_count": 7503,
            "filtered_out_count": 0,
            "pass_count": 6900,
            "warn_count": 1157,
            "fail_count": 236
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Vibrio_vulnificus": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 6100000.0,
              "final_lower": 4700000.0,
              "final_upper": 6100000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5300000.0,
              "source": "computed",
              "ml_lower": 4754751.0,
              "ml_upper": 6067960.0,
              "auto_lower": 4754751.0,
              "auto_upper": 5385200.88,
              "refseq_lower": 4957163.05,
              "refseq_upper": 6060617.35
            },
            {
              "metric": "GC_Content",
              "lower": 45.35,
              "upper": 46.95,
              "final_lower": 45.35,
              "final_upper": 46.95,
              "warn_lower": 46.43,
              "warn_upper": 46.89,
              "source": "computed",
              "ml_lower": 45.3513,
              "ml_upper": 46.9411,
              "auto_lower": 46.366602,
              "auto_upper": 46.94108,
              "refseq_lower": 45.356595,
              "refseq_upper": 46.92447
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4200.0,
              "upper": 5800.0,
              "final_lower": 4200.0,
              "final_upper": 5800.0,
              "warn_lower": 4200.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 4223.26,
              "ml_upper": 5770.0,
              "auto_lower": 4223.26,
              "auto_upper": 4918.019999999999,
              "refseq_lower": 4402.3,
              "refseq_upper": 5765.8
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.12,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.1215,
              "refseq_upper": 99.63
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 6.0,
              "final_lower": null,
              "final_upper": 6.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 5.02,
              "auto_lower": 0.0,
              "auto_upper": 0.6,
              "refseq_lower": 0.4335,
              "refseq_upper": 4.9855
            },
            {
              "metric": "N50",
              "lower": 65000.0,
              "upper": null,
              "final_lower": 65000.0,
              "final_upper": null,
              "warn_lower": 94000.0,
              "warn_upper": 667407.04,
              "source": "computed",
              "ml_lower": 65487.0,
              "ml_upper": 667407.04,
              "auto_lower": 65487.0,
              "auto_upper": 667407.0399999975,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 300.0,
              "final_lower": null,
              "final_upper": 300.0,
              "warn_lower": 69.84,
              "warn_upper": 260.0,
              "source": "computed",
              "ml_lower": 69.84,
              "ml_upper": 295.64,
              "auto_lower": 69.84,
              "auto_upper": 295.6399999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 212168.06,
              "warn_upper": 1759950.08,
              "source": "computed",
              "ml_lower": 212168.06,
              "ml_upper": 1759950.08,
              "auto_lower": 212168.06,
              "auto_upper": 1759950.08,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 1285,
            "refseq_count": 31,
            "final_count": 1285,
            "filtered_out_count": 0,
            "pass_count": 1191,
            "warn_count": 130,
            "fail_count": 43
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Wolbachia_pipientis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 1100000.0,
              "upper": 1800000.0,
              "final_lower": 1100000.0,
              "final_upper": 1800000.0,
              "warn_lower": 1100000.0,
              "warn_upper": 1300000.0,
              "source": "computed",
              "ml_lower": 1121812.0,
              "ml_upper": 1713404.0,
              "auto_lower": 1169693.1,
              "auto_upper": 1330306.1,
              "refseq_lower": 1140015.0,
              "refseq_upper": 1712152.375
            },
            {
              "metric": "GC_Content",
              "lower": 33.66,
              "upper": 35.51,
              "final_lower": 33.66,
              "final_upper": 35.51,
              "warn_lower": 35.14,
              "warn_upper": 35.26,
              "source": "computed",
              "ml_lower": 33.6673,
              "ml_upper": 35.5071,
              "auto_lower": 35.028065,
              "auto_upper": 35.50714250000001,
              "refseq_lower": 33.676562499999996,
              "refseq_upper": 35.3377375
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 1100.0,
              "upper": 1700.0,
              "final_lower": 1100.0,
              "final_upper": 1700.0,
              "warn_lower": 1100.0,
              "warn_upper": 1300.0,
              "source": "computed",
              "ml_lower": 1140.32,
              "ml_upper": 1649.0,
              "auto_lower": 1140.325,
              "auto_upper": 1314.4,
              "refseq_lower": 1242.5,
              "refseq_upper": 1646.875
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 99.86,
              "source": "computed",
              "ml_lower": 97.38,
              "ml_upper": 99.86,
              "auto_lower": 99.519,
              "auto_upper": 99.857,
              "refseq_lower": 97.5025,
              "refseq_upper": 99.45
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.18,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.18,
              "ml_upper": 1.24,
              "auto_lower": 0.52625,
              "auto_upper": 1.2435000000000003,
              "refseq_lower": 0.1863,
              "refseq_upper": 1.09
            },
            {
              "metric": "N50",
              "lower": 13000.0,
              "upper": null,
              "final_lower": 13000.0,
              "final_upper": null,
              "warn_lower": 15000.0,
              "warn_upper": 33917.0,
              "source": "computed",
              "ml_lower": 13524.88,
              "ml_upper": 33917.0,
              "auto_lower": 13524.875,
              "auto_upper": 33917.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 210.0,
              "final_lower": null,
              "final_upper": 210.0,
              "warn_lower": 100.0,
              "warn_upper": 160.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 208.53,
              "auto_lower": 100.0,
              "auto_upper": 208.52500000000026,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 38316.07,
              "warn_upper": 108605.7,
              "source": "computed",
              "ml_lower": 38316.07,
              "ml_upper": 108605.7,
              "auto_lower": 38316.075,
              "auto_upper": 108605.70000000017,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 266,
            "refseq_count": 26,
            "final_count": 266,
            "filtered_out_count": 0,
            "pass_count": 248,
            "warn_count": 17,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Xanthomonas_arboricola": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4700000.0,
              "upper": 5400000.0,
              "final_lower": 4700000.0,
              "final_upper": 5400000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5300000.0,
              "source": "computed",
              "ml_lower": 4723539.04,
              "ml_upper": 5321041.54,
              "auto_lower": 4723539.035,
              "auto_upper": 5321041.535,
              "refseq_lower": 4877096.2,
              "refseq_upper": 5308017.1
            },
            {
              "metric": "GC_Content",
              "lower": 65.13,
              "upper": 65.96,
              "final_lower": 65.13,
              "final_upper": 65.96,
              "warn_lower": 65.27,
              "warn_upper": 65.92,
              "source": "computed",
              "ml_lower": 65.1322,
              "ml_upper": 65.9576,
              "auto_lower": 65.204847,
              "auto_upper": 65.9575875,
              "refseq_lower": 65.144395,
              "refseq_upper": 65.825125
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4700.0,
              "final_lower": 3900.0,
              "final_upper": 4700.0,
              "warn_lower": 3900.0,
              "warn_upper": 4600.0,
              "source": "computed",
              "ml_lower": 3901.94,
              "ml_upper": 4625.0,
              "auto_lower": 3901.94,
              "auto_upper": 4578.525,
              "refseq_lower": 4106.675,
              "refseq_upper": 4622.975
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.59,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 97.71825,
              "refseq_upper": 99.76325
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.35,
              "auto_lower": 0.0,
              "auto_upper": 1.39505,
              "refseq_lower": 0.277,
              "refseq_upper": 2.163249999999999
            },
            {
              "metric": "N50",
              "lower": 53000.0,
              "upper": null,
              "final_lower": 53000.0,
              "final_upper": null,
              "warn_lower": 84000.0,
              "warn_upper": 2886222.62,
              "source": "computed",
              "ml_lower": 53687.12,
              "ml_upper": 2886222.62,
              "auto_lower": 53687.12,
              "auto_upper": 2886222.624999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 230.0,
              "final_lower": null,
              "final_upper": 230.0,
              "warn_lower": 6.99,
              "warn_upper": 190.0,
              "source": "computed",
              "ml_lower": 6.99,
              "ml_upper": 223.55,
              "auto_lower": 6.99,
              "auto_upper": 223.55499999999995,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 172321.5,
              "warn_upper": 2886222.62,
              "source": "computed",
              "ml_lower": 172321.5,
              "ml_upper": 2886222.62,
              "auto_lower": 172321.495,
              "auto_upper": 2886222.624999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 100,
            "refseq_count": 46,
            "final_count": 100,
            "filtered_out_count": 0,
            "pass_count": 97,
            "warn_count": 20,
            "fail_count": 7
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Xanthomonas_campestris": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4800000.0,
              "upper": 5400000.0,
              "final_lower": 4800000.0,
              "final_upper": 5400000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5200000.0,
              "source": "computed",
              "ml_lower": 4815442.0,
              "ml_upper": 5387684.0,
              "auto_lower": 4882847.06,
              "auto_upper": 5252625.62,
              "refseq_lower": 4868194.48,
              "refseq_upper": 5292721.97
            },
            {
              "metric": "GC_Content",
              "lower": 64.73,
              "upper": 65.69,
              "final_lower": 64.73,
              "final_upper": 65.69,
              "warn_lower": 64.97,
              "warn_upper": 65.33,
              "source": "computed",
              "ml_lower": 64.7346,
              "ml_upper": 65.6821,
              "auto_lower": 64.89035100000001,
              "auto_upper": 65.366259,
              "refseq_lower": 64.84227,
              "refseq_upper": 65.404971
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 4800.0,
              "final_lower": 4100.0,
              "final_upper": 4800.0,
              "warn_lower": 4100.0,
              "warn_upper": 4500.0,
              "source": "computed",
              "ml_lower": 4106.11,
              "ml_upper": 4743.0,
              "auto_lower": 4106.11,
              "auto_upper": 4559.45,
              "refseq_lower": 4189.85,
              "refseq_upper": 4661.52
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.13,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.4598,
              "refseq_upper": 99.64
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 4.0,
              "final_lower": null,
              "final_upper": 4.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 3.46,
              "auto_lower": 0.0,
              "auto_upper": 0.3555999999999994,
              "refseq_lower": 0.5885,
              "refseq_upper": 3.0429000000000004
            },
            {
              "metric": "N50",
              "lower": 59000.0,
              "upper": null,
              "final_lower": 59000.0,
              "final_upper": null,
              "warn_lower": 85000.0,
              "warn_upper": 373669.52,
              "source": "computed",
              "ml_lower": 59631.84,
              "ml_upper": 373669.52,
              "auto_lower": 59631.84,
              "auto_upper": 373669.5199999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 220.0,
              "final_lower": null,
              "final_upper": 220.0,
              "warn_lower": 43.11,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 43.11,
              "ml_upper": 213.0,
              "auto_lower": 43.11,
              "auto_upper": 213.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 193436.85,
              "warn_upper": 914510.0,
              "source": "computed",
              "ml_lower": 193436.85,
              "ml_upper": 914510.0,
              "auto_lower": 193436.85,
              "auto_upper": 914510.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 623,
            "refseq_count": 195,
            "final_count": 623,
            "filtered_out_count": 0,
            "pass_count": 572,
            "warn_count": 77,
            "fail_count": 28
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": null,
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Xanthomonas_cissicola": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5000000.0,
              "upper": 5500000.0,
              "final_lower": 5000000.0,
              "final_upper": 5500000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5500000.0,
              "source": "computed",
              "ml_lower": 5018511.21,
              "ml_upper": 5441271.02,
              "auto_lower": 5018511.21,
              "auto_upper": 5441271.02,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "GC_Content",
              "lower": 64.5,
              "upper": 64.81,
              "final_lower": 64.5,
              "final_upper": 64.81,
              "warn_lower": 64.52,
              "warn_upper": 64.8,
              "source": "computed",
              "ml_lower": 64.5,
              "ml_upper": 64.81,
              "auto_lower": 64.5006,
              "auto_upper": 64.8100715,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4200.0,
              "upper": 4800.0,
              "final_lower": 4200.0,
              "final_upper": 4800.0,
              "warn_lower": 4300.0,
              "warn_upper": 4800.0,
              "source": "computed",
              "ml_lower": 4278.44,
              "ml_upper": 4760.31,
              "auto_lower": 4278.435,
              "auto_upper": 4760.314999999998,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Completeness_Specific",
              "lower": 100.0,
              "upper": null,
              "final_lower": 100.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 100.0,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 1.0,
              "final_lower": null,
              "final_upper": 1.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 0.29,
              "auto_lower": 0.01,
              "auto_upper": 0.2882999999999993,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "N50",
              "lower": 57000.0,
              "upper": null,
              "final_lower": 57000.0,
              "final_upper": null,
              "warn_lower": 79000.0,
              "warn_upper": 425167.42,
              "source": "computed",
              "ml_lower": 57325.16,
              "ml_upper": 425167.42,
              "auto_lower": 57325.16,
              "auto_upper": 425167.415,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 300.0,
              "final_lower": null,
              "final_upper": 300.0,
              "warn_lower": 69.0,
              "warn_upper": 250.0,
              "source": "computed",
              "ml_lower": 69.0,
              "ml_upper": 290.83,
              "auto_lower": 69.0,
              "auto_upper": 290.8299999999999,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 170646.12,
              "warn_upper": 667416.64,
              "source": "computed",
              "ml_lower": 170646.12,
              "ml_upper": 667416.64,
              "auto_lower": 170646.125,
              "auto_upper": 667416.64,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 518,
            "refseq_count": 0,
            "final_count": 518,
            "filtered_out_count": 0,
            "pass_count": 470,
            "warn_count": 46,
            "fail_count": 44
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Xanthomonas_euvesicatoria": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4800000.0,
              "upper": 5600000.0,
              "final_lower": 4800000.0,
              "final_upper": 5600000.0,
              "warn_lower": 4900000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4878028.0,
              "ml_upper": 5500184.0,
              "auto_lower": 4911684.4,
              "auto_upper": 5370471.72,
              "refseq_lower": 4885717.51,
              "refseq_upper": 5492981.12
            },
            {
              "metric": "GC_Content",
              "lower": 64.43,
              "upper": 65.06,
              "final_lower": 64.43,
              "final_upper": 65.06,
              "warn_lower": 64.58,
              "warn_upper": 64.98,
              "source": "computed",
              "ml_lower": 64.4365,
              "ml_upper": 65.0557,
              "auto_lower": 64.528768,
              "auto_upper": 65.055652,
              "refseq_lower": 64.442539,
              "refseq_upper": 65.032156
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 4800.0,
              "final_lower": 4100.0,
              "final_upper": 4800.0,
              "warn_lower": 4200.0,
              "warn_upper": 4600.0,
              "source": "computed",
              "ml_lower": 4104.8,
              "ml_upper": 4794.0,
              "auto_lower": 4104.8,
              "auto_upper": 4659.5199999999995,
              "refseq_lower": 4197.07,
              "refseq_upper": 4790.22
            },
            {
              "metric": "Completeness_Specific",
              "lower": 96.0,
              "upper": null,
              "final_lower": 96.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 96.35,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 96.5291,
              "refseq_upper": 99.8891
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.03,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.03,
              "ml_upper": 2.69,
              "auto_lower": 0.03,
              "auto_upper": 1.2564,
              "refseq_lower": 0.03,
              "refseq_upper": 2.6144000000000003
            },
            {
              "metric": "N50",
              "lower": 53000.0,
              "upper": null,
              "final_lower": 53000.0,
              "final_upper": null,
              "warn_lower": 104000.0,
              "warn_upper": 641772.6,
              "source": "computed",
              "ml_lower": 53165.8,
              "ml_upper": 641772.6,
              "auto_lower": 53165.8,
              "auto_upper": 641772.5999999988,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 270.0,
              "final_lower": null,
              "final_upper": 270.0,
              "warn_lower": 35.0,
              "warn_upper": 200.0,
              "source": "computed",
              "ml_lower": 35.0,
              "ml_upper": 266.68,
              "auto_lower": 35.0,
              "auto_upper": 266.67999999999984,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 193971.12,
              "warn_upper": 1324402.28,
              "source": "computed",
              "ml_lower": 193971.12,
              "ml_upper": 1324402.28,
              "auto_lower": 193971.12,
              "auto_upper": 1324402.2799999998,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 873,
            "refseq_count": 19,
            "final_count": 873,
            "filtered_out_count": 0,
            "pass_count": 787,
            "warn_count": 88,
            "fail_count": 51
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Xanthomonas_hortorum": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 5000000.0,
              "upper": 6000000.0,
              "final_lower": 5000000.0,
              "final_upper": 6000000.0,
              "warn_lower": 5000000.0,
              "warn_upper": 5700000.0,
              "source": "computed",
              "ml_lower": 5066786.59,
              "ml_upper": 5974827.0,
              "auto_lower": 5066786.59,
              "auto_upper": 5735153.92,
              "refseq_lower": 5122158.57,
              "refseq_upper": 5973238.05
            },
            {
              "metric": "GC_Content",
              "lower": 63.22,
              "upper": 63.85,
              "final_lower": 63.22,
              "final_upper": 63.85,
              "warn_lower": 63.56,
              "warn_upper": 63.79,
              "source": "computed",
              "ml_lower": 63.2298,
              "ml_upper": 63.8468,
              "auto_lower": 63.5218135,
              "auto_upper": 63.846768,
              "refseq_lower": 63.241845,
              "refseq_upper": 63.774471
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4300.0,
              "upper": 5200.0,
              "final_lower": 4300.0,
              "final_upper": 5200.0,
              "warn_lower": 4300.0,
              "warn_upper": 5200.0,
              "source": "computed",
              "ml_lower": 4327.06,
              "ml_upper": 5196.0,
              "auto_lower": 4327.065,
              "auto_upper": 5183.4,
              "refseq_lower": 4402.95,
              "refseq_upper": 5195.01
            },
            {
              "metric": "Completeness_Specific",
              "lower": 97.0,
              "upper": null,
              "final_lower": 97.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 97.66,
              "ml_upper": 100.0,
              "auto_lower": 99.99065,
              "auto_upper": 100.0,
              "refseq_lower": 97.7304,
              "refseq_upper": 99.72
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 2.7,
              "auto_lower": 0.01,
              "auto_upper": 2.101800000000001,
              "refseq_lower": 0.8566,
              "refseq_upper": 2.7
            },
            {
              "metric": "N50",
              "lower": 16000.0,
              "upper": null,
              "final_lower": 16000.0,
              "final_upper": null,
              "warn_lower": 18000.0,
              "warn_upper": 143438.95,
              "source": "computed",
              "ml_lower": 16687.36,
              "ml_upper": 143438.95,
              "auto_lower": 16687.355,
              "auto_upper": 143438.95,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 800.0,
              "final_lower": null,
              "final_upper": 800.0,
              "warn_lower": 121.13,
              "warn_upper": 650.0,
              "source": "computed",
              "ml_lower": 121.13,
              "ml_upper": 796.14,
              "auto_lower": 121.13,
              "auto_upper": 796.1400000000001,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 60464.08,
              "warn_upper": 349943.06,
              "source": "computed",
              "ml_lower": 60464.08,
              "ml_upper": 349943.06,
              "auto_lower": 60464.075,
              "auto_upper": 349943.05500000005,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 214,
            "refseq_count": 23,
            "final_count": 214,
            "filtered_out_count": 0,
            "pass_count": 196,
            "warn_count": 21,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Xanthomonas_oryzae": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4000000.0,
              "upper": 5300000.0,
              "final_lower": 4000000.0,
              "final_upper": 5300000.0,
              "warn_lower": 4000000.0,
              "warn_upper": 4700000.0,
              "source": "computed",
              "ml_lower": 4003660.54,
              "ml_upper": 5238555.0,
              "auto_lower": 4003660.54,
              "auto_upper": 4702285.600000001,
              "refseq_lower": 4660811.605,
              "refseq_upper": 5196965.41
            },
            {
              "metric": "GC_Content",
              "lower": 63.12,
              "upper": 64.26,
              "final_lower": 63.12,
              "final_upper": 64.26,
              "warn_lower": 63.38,
              "warn_upper": 63.86,
              "source": "computed",
              "ml_lower": 63.1239,
              "ml_upper": 64.2573,
              "auto_lower": 63.327304,
              "auto_upper": 63.872738,
              "refseq_lower": 63.596726000000004,
              "refseq_upper": 64.13960900000001
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4000.0,
              "upper": 5300.0,
              "final_lower": 4000.0,
              "final_upper": 5300.0,
              "warn_lower": 4000.0,
              "warn_upper": 5300.0,
              "source": "computed",
              "ml_lower": 4057.6,
              "ml_upper": 5295.8,
              "auto_lower": 4057.6,
              "auto_upper": 5295.8,
              "refseq_lower": 4252.27,
              "refseq_upper": 4840.92
            },
            {
              "metric": "Completeness_Specific",
              "lower": 84.0,
              "upper": null,
              "final_lower": 84.0,
              "final_upper": null,
              "warn_lower": 86.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 84.61,
              "ml_upper": 100.0,
              "auto_lower": 84.6122,
              "auto_upper": 100.0,
              "refseq_lower": 93.35215000000001,
              "refseq_upper": 95.97515
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.12,
              "warn_upper": 2.0,
              "source": "computed",
              "ml_lower": 0.12,
              "ml_upper": 4.47,
              "auto_lower": 0.12,
              "auto_upper": 1.727000000000001,
              "refseq_lower": 0.17135,
              "refseq_upper": 3.1822000000000026
            },
            {
              "metric": "N50",
              "lower": 4000.0,
              "upper": null,
              "final_lower": 4000.0,
              "final_upper": null,
              "warn_lower": 4000.0,
              "warn_upper": 30523.9,
              "source": "computed",
              "ml_lower": 4332.64,
              "ml_upper": 30523.9,
              "auto_lower": 4332.64,
              "auto_upper": 30523.900000000005,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 1640.0,
              "final_lower": null,
              "final_upper": 1640.0,
              "warn_lower": 478.38,
              "warn_upper": 1590.0,
              "source": "computed",
              "ml_lower": 478.38,
              "ml_upper": 1632.7,
              "auto_lower": 478.38,
              "auto_upper": 1632.7,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 28798.14,
              "warn_upper": 160691.56,
              "source": "computed",
              "ml_lower": 28798.14,
              "ml_upper": 160691.56,
              "auto_lower": 28798.14,
              "auto_upper": 160691.56,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 293,
            "refseq_count": 228,
            "final_count": 293,
            "filtered_out_count": 0,
            "pass_count": 274,
            "warn_count": 34,
            "fail_count": 20
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "frac_incomplete",
                  "flag": "error",
                  "fraction": 0.1706,
                  "count": 50,
                  "n": 293,
                  "interpretation": null
                }
              ]
            }
          }
        }
      }
    },
    "Xylella_fastidiosa": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 2400000.0,
              "upper": 2900000.0,
              "final_lower": 2400000.0,
              "final_upper": 2900000.0,
              "warn_lower": 2400000.0,
              "warn_upper": 2700000.0,
              "source": "computed",
              "ml_lower": 2407487.64,
              "ml_upper": 2896312.0,
              "auto_lower": 2407487.645,
              "auto_upper": 2697429.735,
              "refseq_lower": 2439529.17,
              "refseq_upper": 2887492.92
            },
            {
              "metric": "GC_Content",
              "lower": 51.46,
              "upper": 52.82,
              "final_lower": 51.46,
              "final_upper": 52.82,
              "warn_lower": 51.46,
              "warn_upper": 52.53,
              "source": "computed",
              "ml_lower": 51.4615,
              "ml_upper": 52.8133,
              "auto_lower": 51.4615375,
              "auto_upper": 52.525864,
              "refseq_lower": 51.652917,
              "refseq_upper": 52.80531
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 2100.0,
              "upper": 2900.0,
              "final_lower": 2100.0,
              "final_upper": 2900.0,
              "warn_lower": 2300.0,
              "warn_upper": 2900.0,
              "source": "computed",
              "ml_lower": 2150.0,
              "ml_upper": 2868.92,
              "auto_lower": 2351.03,
              "auto_upper": 2868.9249999999997,
              "refseq_lower": 2154.23,
              "refseq_upper": 2802.53
            },
            {
              "metric": "Completeness_Specific",
              "lower": 92.0,
              "upper": null,
              "final_lower": 92.0,
              "final_upper": null,
              "warn_lower": 99.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 92.79,
              "ml_upper": 100.0,
              "auto_lower": 99.98,
              "auto_upper": 100.0,
              "refseq_lower": 93.0579,
              "refseq_upper": 97.6412
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 9.0,
              "final_lower": null,
              "final_upper": 9.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 8.59,
              "auto_lower": 0.0,
              "auto_upper": 1.007899999999998,
              "refseq_lower": 0.05,
              "refseq_upper": 6.648900000000005
            },
            {
              "metric": "N50",
              "lower": 42000.0,
              "upper": null,
              "final_lower": 42000.0,
              "final_upper": null,
              "warn_lower": 54000.0,
              "warn_upper": 259583.25,
              "source": "computed",
              "ml_lower": 42939.45,
              "ml_upper": 259583.25,
              "auto_lower": 42939.45,
              "auto_upper": 259583.2499999996,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 71.17,
              "warn_upper": 320.0,
              "source": "computed",
              "ml_lower": 71.17,
              "ml_upper": 323.94,
              "auto_lower": 71.165,
              "auto_upper": 323.93999999999994,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 118161.64,
              "warn_upper": 478954.52,
              "source": "computed",
              "ml_lower": 118161.64,
              "ml_upper": 478954.52,
              "auto_lower": 118161.645,
              "auto_upper": 478954.52499999956,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 204,
            "refseq_count": 95,
            "final_count": 204,
            "filtered_out_count": 0,
            "pass_count": 198,
            "warn_count": 11,
            "fail_count": 10
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "warn",
              "low_count_flag": "warn",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    },
    "Yersinia_enterocolitica": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4300000.0,
              "upper": 5200000.0,
              "final_lower": 4300000.0,
              "final_upper": 5200000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 5000000.0,
              "source": "computed",
              "ml_lower": 4392691.0,
              "ml_upper": 5149746.0,
              "auto_lower": 4392691.0,
              "auto_upper": 5046163.875,
              "refseq_lower": 4516687.3,
              "refseq_upper": 5137243.02
            },
            {
              "metric": "GC_Content",
              "lower": 46.73,
              "upper": 47.44,
              "final_lower": 46.73,
              "final_upper": 47.44,
              "warn_lower": 46.85,
              "warn_upper": 47.34,
              "source": "computed",
              "ml_lower": 46.7334,
              "ml_upper": 47.432,
              "auto_lower": 46.7333875,
              "auto_upper": 47.4320125,
              "refseq_lower": 46.796208,
              "refseq_upper": 47.298157
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4000.0,
              "upper": 5000.0,
              "final_lower": 4000.0,
              "final_upper": 5000.0,
              "warn_lower": 4000.0,
              "warn_upper": 4700.0,
              "source": "computed",
              "ml_lower": 4022.0,
              "ml_upper": 4903.0,
              "auto_lower": 4022.0,
              "auto_upper": 4767.75,
              "refseq_lower": 4132.42,
              "refseq_upper": 4885.78
            },
            {
              "metric": "Completeness_Specific",
              "lower": 91.0,
              "upper": null,
              "final_lower": 91.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 91.5,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 91.857,
              "refseq_upper": 99.4538
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 5.0,
              "final_lower": null,
              "final_upper": 5.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 4.75,
              "auto_lower": 0.0,
              "auto_upper": 0.61875,
              "refseq_lower": 0.5484,
              "refseq_upper": 4.6954
            },
            {
              "metric": "N50",
              "lower": 34000.0,
              "upper": null,
              "final_lower": 34000.0,
              "final_upper": null,
              "warn_lower": 47000.0,
              "warn_upper": 572066.12,
              "source": "computed",
              "ml_lower": 34672.0,
              "ml_upper": 572066.12,
              "auto_lower": 34672.0,
              "auto_upper": 572066.125,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 330.0,
              "final_lower": null,
              "final_upper": 330.0,
              "warn_lower": 32.0,
              "warn_upper": 270.0,
              "source": "computed",
              "ml_lower": 32.0,
              "ml_upper": 320.88,
              "auto_lower": 32.0,
              "auto_upper": 320.875,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 122226.88,
              "warn_upper": 1084873.38,
              "source": "computed",
              "ml_lower": 122226.88,
              "ml_upper": 1084873.38,
              "auto_lower": 122226.875,
              "auto_upper": 1084873.375,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 3026,
            "refseq_count": 43,
            "final_count": 3026,
            "filtered_out_count": 0,
            "pass_count": 2864,
            "warn_count": 313,
            "fail_count": 154
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Yersinia_intermedia": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4600000.0,
              "upper": 5400000.0,
              "final_lower": 4600000.0,
              "final_upper": 5400000.0,
              "warn_lower": 4700000.0,
              "warn_upper": 5400000.0,
              "source": "computed",
              "ml_lower": 4674537.32,
              "ml_upper": 5378349.75,
              "auto_lower": 4674537.325,
              "auto_upper": 5378349.75,
              "refseq_lower": 4761028.95,
              "refseq_upper": 4998966.35
            },
            {
              "metric": "GC_Content",
              "lower": 47.3,
              "upper": 47.97,
              "final_lower": 47.3,
              "final_upper": 47.97,
              "warn_lower": 47.31,
              "warn_upper": 47.84,
              "source": "computed",
              "ml_lower": 47.3065,
              "ml_upper": 47.9605,
              "auto_lower": 47.306537500000005,
              "auto_upper": 47.9605325,
              "refseq_lower": 47.451795,
              "refseq_upper": 47.827749999999995
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 4100.0,
              "upper": 5100.0,
              "final_lower": 4100.0,
              "final_upper": 5100.0,
              "warn_lower": 4200.0,
              "warn_upper": 5100.0,
              "source": "computed",
              "ml_lower": 4170.7,
              "ml_upper": 5093.25,
              "auto_lower": 4170.7,
              "auto_upper": 5093.25,
              "refseq_lower": 4295.65,
              "refseq_upper": 4608.15
            },
            {
              "metric": "Completeness_Specific",
              "lower": 98.0,
              "upper": null,
              "final_lower": 98.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 98.54,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 98.5445,
              "refseq_upper": 99.69500000000001
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.01,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.01,
              "ml_upper": 2.08,
              "auto_lower": 0.0085,
              "auto_upper": 0.5545000000000001,
              "refseq_lower": 1.0825,
              "refseq_upper": 2.0589999999999997
            },
            {
              "metric": "N50",
              "lower": 52000.0,
              "upper": null,
              "final_lower": 52000.0,
              "final_upper": null,
              "warn_lower": 66000.0,
              "warn_upper": 418641.13,
              "source": "computed",
              "ml_lower": 52366.38,
              "ml_upper": 418641.13,
              "auto_lower": 52366.375,
              "auto_upper": 418641.1250000002,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 310.0,
              "final_lower": null,
              "final_upper": 310.0,
              "warn_lower": 45.85,
              "warn_upper": 220.0,
              "source": "computed",
              "ml_lower": 45.85,
              "ml_upper": 307.68,
              "auto_lower": 45.85,
              "auto_upper": 307.67500000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 156889.9,
              "warn_upper": 1359168.0,
              "source": "computed",
              "ml_lower": 156889.9,
              "ml_upper": 1359168.0,
              "auto_lower": 156889.9,
              "auto_upper": 1359168.0,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 86,
            "refseq_count": 11,
            "final_count": 86,
            "filtered_out_count": 0,
            "pass_count": 80,
            "warn_count": 13,
            "fail_count": 9
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": []
            }
          }
        }
      }
    },
    "Yersinia_pestis": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 4400000.0,
              "upper": 5000000.0,
              "final_lower": 4400000.0,
              "final_upper": 5000000.0,
              "warn_lower": 4400000.0,
              "warn_upper": 4900000.0,
              "source": "computed",
              "ml_lower": 4409977.08,
              "ml_upper": 4930959.0,
              "auto_lower": 4409977.08,
              "auto_upper": 4908546.34,
              "refseq_lower": 4499862.22,
              "refseq_upper": 4922639.01
            },
            {
              "metric": "GC_Content",
              "lower": 47.32,
              "upper": 47.77,
              "final_lower": 47.32,
              "final_upper": 47.77,
              "warn_lower": 47.39,
              "warn_upper": 47.69,
              "source": "computed",
              "ml_lower": 47.326,
              "ml_upper": 47.7663,
              "auto_lower": 47.326016,
              "auto_upper": 47.766314,
              "refseq_lower": 47.581351,
              "refseq_upper": 47.728076
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3900.0,
              "upper": 4600.0,
              "final_lower": 3900.0,
              "final_upper": 4600.0,
              "warn_lower": 4000.0,
              "warn_upper": 4400.0,
              "source": "computed",
              "ml_lower": 3938.62,
              "ml_upper": 4522.0,
              "auto_lower": 3938.62,
              "auto_upper": 4444.360000000001,
              "refseq_lower": 4080.465,
              "refseq_upper": 4513.11
            },
            {
              "metric": "Completeness_Specific",
              "lower": 94.0,
              "upper": null,
              "final_lower": 94.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 94.64,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 94.94705,
              "refseq_upper": 99.2097
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 2.0,
              "final_lower": null,
              "final_upper": 2.0,
              "warn_lower": 0.09,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.09,
              "ml_upper": 1.95,
              "auto_lower": 0.0866,
              "auto_upper": 0.55,
              "refseq_lower": 0.66,
              "refseq_upper": 1.7327999999999997
            },
            {
              "metric": "N50",
              "lower": 18000.0,
              "upper": null,
              "final_lower": 18000.0,
              "final_upper": null,
              "warn_lower": 22000.0,
              "warn_upper": 151058.68,
              "source": "computed",
              "ml_lower": 18099.46,
              "ml_upper": 151058.68,
              "auto_lower": 18099.46,
              "auto_upper": 151058.68,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 530.0,
              "final_lower": null,
              "final_upper": 530.0,
              "warn_lower": 112.66,
              "warn_upper": 430.0,
              "source": "computed",
              "ml_lower": 112.66,
              "ml_upper": 526.7,
              "auto_lower": 112.66,
              "auto_upper": 526.7000000000007,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 60111.64,
              "warn_upper": 528038.02,
              "source": "computed",
              "ml_lower": 60111.64,
              "ml_upper": 528038.02,
              "auto_lower": 60111.64,
              "auto_upper": 528038.02,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 2133,
            "refseq_count": 232,
            "final_count": 2133,
            "filtered_out_count": 0,
            "pass_count": 1974,
            "warn_count": 204,
            "fail_count": 179
          },
          "warnings": {
            "low_genome": false,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "info",
              "low_count_flag": null,
              "fired_signals": []
            }
          }
        }
      }
    },
    "Yersinia_ruckeri": {
      "schemes": {
        "qualibact-v1.0": {
          "thresholds": [
            {
              "metric": "Genome_Size",
              "lower": 3500000.0,
              "upper": 4100000.0,
              "final_lower": 3500000.0,
              "final_upper": 4100000.0,
              "warn_lower": 3600000.0,
              "warn_upper": 3900000.0,
              "source": "computed",
              "ml_lower": 3585796.0,
              "ml_upper": 4006131.0,
              "auto_lower": 3632767.33,
              "auto_upper": 3900268.74,
              "refseq_lower": 3590068.4,
              "refseq_upper": 4005458.46
            },
            {
              "metric": "GC_Content",
              "lower": 47.32,
              "upper": 47.72,
              "final_lower": 47.32,
              "final_upper": 47.72,
              "warn_lower": 47.37,
              "warn_upper": 47.65,
              "source": "computed",
              "ml_lower": 47.3299,
              "ml_upper": 47.7168,
              "auto_lower": 47.367675999999996,
              "auto_upper": 47.641006000000004,
              "refseq_lower": 47.340108,
              "refseq_upper": 47.716778
            },
            {
              "metric": "Total_Coding_Sequences",
              "lower": 3200.0,
              "upper": 3700.0,
              "final_lower": 3200.0,
              "final_upper": 3700.0,
              "warn_lower": 3300.0,
              "warn_upper": 3600.0,
              "source": "computed",
              "ml_lower": 3236.0,
              "ml_upper": 3679.0,
              "auto_lower": 3239.33,
              "auto_upper": 3578.12,
              "refseq_lower": 3243.7,
              "refseq_upper": 3673.7200000000003
            },
            {
              "metric": "Completeness_Specific",
              "lower": 93.0,
              "upper": null,
              "final_lower": 93.0,
              "final_upper": null,
              "warn_lower": 100.0,
              "warn_upper": 100.0,
              "source": "computed",
              "ml_lower": 93.4,
              "ml_upper": 100.0,
              "auto_lower": 100.0,
              "auto_upper": 100.0,
              "refseq_lower": 93.4374,
              "refseq_upper": 95.74
            },
            {
              "metric": "Contamination",
              "lower": null,
              "upper": 3.0,
              "final_lower": null,
              "final_upper": 3.0,
              "warn_lower": 0.0,
              "warn_upper": 1.0,
              "source": "computed",
              "ml_lower": 0.0,
              "ml_upper": 2.07,
              "auto_lower": 0.0,
              "auto_upper": 0.13060000000000002,
              "refseq_lower": 0.15100000000000002,
              "refseq_upper": 2.0062
            },
            {
              "metric": "N50",
              "lower": 112000.0,
              "upper": null,
              "final_lower": 112000.0,
              "final_upper": null,
              "warn_lower": 117000.0,
              "warn_upper": 322209.18,
              "source": "computed",
              "ml_lower": 112684.57,
              "ml_upper": 322209.18,
              "auto_lower": 112684.57,
              "auto_upper": 322209.18,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "no_of_contigs",
              "lower": null,
              "upper": 130.0,
              "final_lower": null,
              "final_upper": 130.0,
              "warn_lower": 36.41,
              "warn_upper": 120.0,
              "source": "computed",
              "ml_lower": 36.41,
              "ml_upper": 124.65,
              "auto_lower": 36.41,
              "auto_upper": 124.65,
              "refseq_lower": null,
              "refseq_upper": null
            },
            {
              "metric": "longest",
              "lower": null,
              "upper": null,
              "final_lower": null,
              "final_upper": null,
              "warn_lower": 253761.84,
              "warn_upper": 1056069.19,
              "source": "computed",
              "ml_lower": 253761.84,
              "ml_upper": 1056069.19,
              "auto_lower": 253761.84,
              "auto_upper": 1056069.19,
              "refseq_lower": null,
              "refseq_upper": null
            }
          ],
          "counts": {
            "genome_count": 95,
            "refseq_count": 45,
            "final_count": 95,
            "filtered_out_count": 0,
            "pass_count": 89,
            "warn_count": 13,
            "fail_count": 8
          },
          "warnings": {
            "low_genome": true,
            "species_separation": false,
            "notes": [],
            "engine": {
              "severity": "error",
              "low_count_flag": "error",
              "fired_signals": [
                {
                  "signal": "final_bound_dragged",
                  "flag": "warn",
                  "fraction": null,
                  "count": null,
                  "n": null,
                  "interpretation": "FINAL band is dragged far beyond the species WARN band by a small number of extreme outliers (either in the submitted species data, or in the RefSeq reference set)."
                }
              ]
            }
          }
        }
      }
    }
  }
}
